Wall clock time and date at job start Wed Apr 1 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.12701 * 2 1 4 4 C 1.49872 * 109.13300 * 240.82298 * 2 1 3 5 5 C 1.29738 * 123.08940 * 220.03164 * 4 2 1 6 6 C 1.49872 * 123.08909 * 359.97438 * 5 4 2 7 7 H 1.08999 * 109.13227 * 259.14405 * 6 5 4 8 8 O 1.42898 * 109.13221 * 140.02997 * 6 5 4 9 9 C 1.49942 * 111.20620 * 19.58978 * 6 5 4 10 10 C 1.47094 * 118.71095 * 160.53335 * 9 6 5 11 11 O 1.21613 * 120.00035 * 274.75222 * 10 9 6 12 12 N 1.34775 * 120.00353 * 94.74855 * 10 9 6 13 13 C 1.46504 * 119.99840 * 4.16980 * 12 10 9 14 14 C 1.50700 * 109.47231 * 174.90063 * 13 12 10 15 15 H 1.07999 * 120.00057 * 5.18333 * 14 13 12 16 16 C 1.37873 * 120.00045 * 185.17906 * 14 13 12 17 17 N 1.31520 * 120.00012 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99987 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47149 * 89.99869 * 18 16 14 20 20 H 1.48502 * 109.47181 * 209.99316 * 18 16 14 21 21 H 1.48496 * 109.47122 * 329.99664 * 18 16 14 22 22 C 1.46496 * 120.00340 * 184.16399 * 12 10 9 23 23 C 1.50701 * 109.47506 * 270.00394 * 22 12 10 24 24 C 1.38667 * 120.42009 * 89.99493 * 23 22 12 25 25 C 1.38621 * 118.42475 * 179.97438 * 24 23 22 26 26 C 1.38226 * 119.15973 * 0.02562 * 25 24 23 27 27 N 1.31855 * 120.76616 * 0.02562 * 26 25 24 28 28 C 1.31888 * 121.72177 * 359.97438 * 27 26 25 29 29 C 1.31922 * 122.57392 * 340.80477 * 9 6 5 30 30 H 1.08995 * 109.47067 * 179.17613 * 1 2 3 31 31 H 1.09006 * 109.46887 * 299.17900 * 1 2 3 32 32 H 1.09005 * 109.46882 * 59.17419 * 1 2 3 33 33 H 0.96704 * 113.99571 * 300.81926 * 3 2 1 34 34 H 1.08002 * 118.45463 * 40.00994 * 4 2 1 35 35 H 1.08002 * 118.45266 * 180.02562 * 5 4 2 36 36 H 0.96707 * 114.00059 * 62.29911 * 8 6 5 37 37 H 1.09003 * 109.46727 * 294.90143 * 13 12 10 38 38 H 1.08999 * 109.46849 * 54.89962 * 13 12 10 39 39 H 0.96994 * 119.99552 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47543 * 150.00111 * 22 12 10 41 41 H 1.09001 * 109.46995 * 30.00564 * 22 12 10 42 42 H 1.08004 * 120.79039 * 0.02562 * 24 23 22 43 43 H 1.08000 * 120.42886 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.62264 * 179.72227 * 26 25 24 45 45 H 1.08006 * 119.61669 * 180.02562 * 28 27 26 46 46 H 1.07998 * 118.71123 * 179.70256 * 29 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9982 1.3502 0.0000 4 6 2.0212 -0.6903 -1.2363 5 6 3.0397 -1.4940 -1.2415 6 6 3.8334 -1.8170 -0.0120 7 1 4.7519 -1.2301 -0.0153 8 8 4.1669 -3.2065 -0.0214 9 6 3.0564 -1.5065 1.2323 10 6 3.4650 -2.1379 2.4965 11 8 3.0596 -3.2488 2.7802 12 7 4.2887 -1.4853 3.3403 13 6 4.7041 -0.1122 3.0429 14 6 5.5137 0.4281 4.1934 15 1 5.7712 -0.2154 5.0217 16 6 5.9257 1.7438 4.1886 17 7 6.6318 2.2155 5.1929 18 14 5.4798 2.8569 2.7562 19 1 4.1820 3.5236 3.0328 20 1 6.5368 3.8850 2.5806 21 1 5.3660 2.0470 1.5168 22 6 4.7686 -2.1488 4.5550 23 6 3.8091 -1.8815 5.6860 24 6 2.7444 -2.7383 5.9208 25 6 1.8876 -2.4533 6.9726 26 6 2.1211 -1.3321 7.7466 27 7 3.1435 -0.5388 7.4936 28 6 3.9787 -0.7790 6.5015 29 6 2.0175 -0.6935 1.2366 30 1 -0.3633 -1.0275 -0.0148 31 1 -0.3633 0.5011 0.8973 32 1 -0.3633 0.5266 -0.8825 33 1 1.6995 1.8700 -0.7587 34 1 1.5028 -0.5105 -2.1665 35 1 3.3296 -1.9511 -2.1761 36 1 4.7233 -3.4724 -0.7663 37 1 5.3100 -0.1042 2.1368 38 1 3.8217 0.5104 2.8954 39 1 6.9219 3.1410 5.1892 40 1 5.7538 -1.7621 4.8154 41 1 4.8344 -3.2228 4.3806 42 1 2.5868 -3.6076 5.2995 43 1 1.0478 -3.0985 7.1843 44 1 1.4558 -1.1005 8.5652 45 1 4.8053 -0.1066 6.3250 46 1 1.5001 -0.5178 2.1681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183535987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:40 Heat of formation + Delta-G solvation = -63.584233 kcal Electronic energy + Delta-G solvation = -31412.449618 eV Core-core repulsion = 27267.749914 eV Total energy + Delta-G solvation = -4144.699704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74156 -40.96161 -39.90148 -38.11741 -37.13787 -35.50007 -34.63866 -33.82333 -32.92440 -32.29632 -31.68016 -30.03030 -27.88116 -27.19638 -24.82272 -24.43956 -24.01450 -23.27784 -22.74131 -20.46450 -19.32747 -18.76720 -18.57425 -18.07434 -17.83393 -17.50790 -17.21344 -16.96668 -16.85957 -16.45190 -16.06624 -15.80896 -15.30993 -15.03599 -14.93665 -14.70596 -14.51291 -14.29165 -14.14364 -13.98528 -13.89419 -13.82424 -13.43446 -13.08577 -13.06975 -12.86482 -12.80082 -12.73570 -12.48794 -12.23988 -11.92268 -11.54542 -11.25555 -11.15651 -10.83690 -10.82649 -10.65539 -10.61050 -10.33456 -10.26484 -9.89208 -9.58449 -8.29784 -6.36522 0.16823 0.37629 0.43180 1.09389 1.34459 1.39424 1.47742 1.50560 2.19608 2.32483 2.96393 3.04313 3.15035 3.29337 3.49006 3.63033 3.64826 3.76296 3.89734 3.91700 3.96519 4.01814 4.10314 4.17854 4.22529 4.31186 4.47545 4.59070 4.62202 4.66235 4.76333 4.82631 4.87619 4.95340 4.98327 5.02881 5.14785 5.18136 5.21443 5.24298 5.43364 5.45276 5.62535 5.69221 5.87531 6.01544 6.60192 6.65233 6.79622 6.83966 7.07743 7.12572 7.29040 8.81211 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.005300 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.044092 B = 5281.310925 C = 6695.473727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.188 3.812 3 O -0.566 6.566 4 C -0.171 4.171 5 C -0.162 4.162 6 C 0.176 3.824 7 H 0.079 0.921 8 O -0.565 6.565 9 C -0.132 4.132 10 C 0.554 3.446 11 O -0.565 6.565 12 N -0.582 5.582 13 C 0.230 3.770 14 C -0.550 4.550 15 H 0.088 0.912 16 C 0.037 3.963 17 N -0.922 5.922 18 Si 0.923 3.077 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.249 1.249 22 C 0.163 3.837 23 C -0.156 4.156 24 C -0.067 4.067 25 C -0.175 4.175 26 C 0.086 3.914 27 N -0.519 5.519 28 C 0.106 3.894 29 C -0.102 4.102 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.398 0.602 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.399 0.601 37 H 0.023 0.977 38 H 0.014 0.986 39 H 0.269 0.731 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.137 0.863 43 H 0.168 0.832 44 H 0.184 0.816 45 H 0.154 0.846 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 -6.319 -13.529 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.148 3.852 3 O -0.376 6.376 4 C -0.188 4.188 5 C -0.180 4.180 6 C 0.117 3.883 7 H 0.097 0.903 8 O -0.373 6.373 9 C -0.135 4.135 10 C 0.342 3.658 11 O -0.445 6.445 12 N -0.312 5.312 13 C 0.109 3.891 14 C -0.587 4.587 15 H 0.106 0.894 16 C -0.164 4.164 17 N -0.561 5.561 18 Si 0.748 3.252 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.172 1.172 22 C 0.041 3.959 23 C -0.159 4.159 24 C -0.093 4.093 25 C -0.194 4.194 26 C -0.072 4.072 27 N -0.228 5.228 28 C -0.049 4.049 29 C -0.121 4.121 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.249 0.751 34 H 0.176 0.824 35 H 0.174 0.826 36 H 0.250 0.750 37 H 0.041 0.959 38 H 0.032 0.968 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.155 0.845 43 H 0.186 0.814 44 H 0.201 0.799 45 H 0.171 0.829 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.338 -6.178 -11.703 17.426 hybrid contribution 0.225 0.396 -1.552 1.617 sum -11.112 -5.782 -13.255 18.237 Atomic orbital electron populations 1.22424 0.92165 1.03618 1.04126 1.18585 0.94674 0.82283 0.89683 1.86717 1.77257 1.21910 1.51709 1.22969 0.97769 0.98630 0.99482 1.23014 0.96840 0.99488 0.98688 1.18955 0.95939 0.83819 0.89544 0.90347 1.86702 1.73948 1.22981 1.53702 1.20840 0.97788 1.00253 0.94628 1.18606 0.78179 0.84906 0.84062 1.90672 1.56187 1.20530 1.77107 1.48058 1.46208 1.15644 1.21290 1.19402 0.94397 0.78608 0.96704 1.21592 1.33802 0.97154 1.06142 0.89405 1.25445 0.94171 0.99007 0.97753 1.69962 1.37534 1.16323 1.32261 0.86072 0.77982 0.79618 0.81520 1.20360 1.20615 1.17240 1.20210 0.96753 0.97255 0.81715 1.21195 0.99146 0.97046 0.98478 1.21760 0.92697 0.98573 0.96313 1.22418 1.01305 0.99611 0.96068 1.23379 0.94112 0.90688 0.98975 1.67782 1.05134 1.31242 1.18661 1.23272 0.97499 0.94657 0.89505 1.22501 0.94801 0.95257 0.99536 0.91076 0.92148 0.88432 0.75130 0.82448 0.82617 0.75033 0.95899 0.96767 0.92151 0.88506 0.89842 0.84537 0.81443 0.79877 0.82924 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 8.69 71.98 0.63 -2.32 16 2 C 0.19 4.48 1.28 -12.79 -0.02 4.46 16 3 O -0.57 -14.36 12.91 -148.98 -1.92 -16.29 16 4 C -0.17 -3.19 8.69 26.69 0.23 -2.96 16 5 C -0.16 -3.31 9.49 26.69 0.25 -3.06 16 6 C 0.18 5.07 3.77 28.61 0.11 5.18 16 7 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 8 O -0.56 -15.96 12.71 -148.98 -1.89 -17.86 16 9 C -0.13 -4.73 4.21 -18.63 -0.08 -4.81 16 10 C 0.55 23.13 6.35 86.57 0.55 23.68 16 11 O -0.56 -25.38 16.09 -4.07 -0.07 -25.45 16 12 N -0.58 -25.19 2.86 -834.79 -2.38 -27.58 16 13 C 0.23 10.72 4.06 85.63 0.35 11.07 16 14 C -0.55 -28.71 7.63 25.60 0.20 -28.52 16 15 H 0.09 4.77 3.29 -2.91 -0.01 4.76 16 16 C 0.04 2.03 5.47 84.65 0.46 2.49 16 17 N -0.92 -53.50 13.96 21.45 0.30 -53.20 16 18 Si 0.92 42.66 27.37 68.60 1.88 44.54 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.25 -10.87 6.69 99.48 0.67 -10.20 16 22 C 0.16 6.77 5.03 85.63 0.43 7.21 16 23 C -0.16 -6.34 5.46 -19.77 -0.11 -6.45 16 24 C -0.07 -2.36 9.77 22.46 0.22 -2.14 16 25 C -0.17 -5.16 10.11 22.36 0.23 -4.93 16 26 C 0.09 2.76 11.18 84.69 0.95 3.70 16 27 N -0.52 -21.65 10.36 -195.84 -2.03 -23.67 16 28 C 0.11 4.77 10.17 84.67 0.86 5.63 16 29 C -0.10 -3.36 7.84 24.59 0.19 -3.17 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.40 5.62 9.02 -74.05 -0.67 4.96 16 34 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.40 6.46 9.09 -74.05 -0.67 5.79 16 37 H 0.02 1.07 7.55 -2.39 -0.02 1.05 16 38 H 0.01 0.70 6.61 -2.39 -0.02 0.68 16 39 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.10 4.21 5.70 -2.39 -0.01 4.20 16 41 H 0.08 3.28 7.44 -2.39 -0.02 3.26 16 42 H 0.14 4.71 7.51 -2.91 -0.02 4.69 16 43 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 44 H 0.18 4.34 8.06 -2.91 -0.02 4.31 16 45 H 0.15 7.89 5.10 -2.91 -0.01 7.87 16 46 H 0.11 3.76 7.99 -2.91 -0.02 3.74 16 Total: -1.00 -75.66 378.76 -1.01 -76.67 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.34 Total: 37.76 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.45 Total: 5.07 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.11 Total: -104.45 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -3.88 Total: -59.59 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Total: -75.66 -1.01 -76.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183535987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.088 kcal (2) G-P(sol) polarization free energy of solvation -75.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds