Wall clock time and date at job start Wed Apr 1 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99852 * 2 1 4 4 C 1.38757 * 120.05995 * 0.25889 * 3 2 1 5 5 C 1.38120 * 119.94289 * 180.27375 * 4 3 2 6 6 C 1.38283 * 120.05866 * 359.72134 * 5 4 3 7 7 C 1.38245 * 120.11197 * 0.02562 * 6 5 4 8 8 C 1.38172 * 120.05545 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.02724 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.46946 * 224.18865 * 9 8 7 11 11 C 1.52992 * 109.47152 * 344.19395 * 9 8 7 12 12 N 1.46504 * 109.47371 * 174.99987 * 11 9 8 13 13 C 1.34771 * 120.00512 * 179.97438 * 12 11 9 14 14 O 1.21694 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.46653 * 120.00133 * 180.27716 * 13 12 11 16 16 C 1.36545 * 125.98821 * 179.72498 * 15 13 12 17 17 C 1.40364 * 106.70679 * 179.97438 * 16 15 13 18 18 C 1.35126 * 107.11585 * 0.02562 * 17 16 15 19 19 C 1.50705 * 125.61285 * 180.02562 * 18 17 16 20 20 O 1.33926 * 108.76927 * 359.76633 * 18 17 16 21 21 N 1.46503 * 109.46807 * 104.19061 * 9 8 7 22 22 C 1.36939 * 120.00303 * 299.21557 * 21 9 8 23 23 H 1.07996 * 119.99896 * 6.11236 * 22 21 9 24 24 C 1.38806 * 119.99723 * 186.10978 * 22 21 9 25 25 N 1.31620 * 120.00324 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99667 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46891 * 60.00631 * 26 24 22 28 28 H 1.48503 * 109.47042 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47693 * 300.00286 * 26 24 22 30 30 H 1.09004 * 109.47000 * 59.99391 * 1 2 3 31 31 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46889 * 299.99963 * 1 2 3 33 33 H 1.08000 * 120.02368 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.96884 * 179.74213 * 5 4 3 35 35 H 1.07996 * 119.94785 * 180.02562 * 6 5 4 36 36 H 1.08003 * 119.97763 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47340 * 54.99908 * 11 9 8 38 38 H 1.09003 * 109.47315 * 294.99630 * 11 9 8 39 39 H 0.97009 * 119.99342 * 0.02562 * 12 11 9 40 40 H 1.08005 * 126.64787 * 359.97438 * 16 15 13 41 41 H 1.08005 * 126.43991 * 179.97438 * 17 16 15 42 42 H 1.08997 * 109.47241 * 90.00289 * 19 18 17 43 43 H 1.09003 * 109.46629 * 209.99818 * 19 18 17 44 44 H 1.08997 * 109.47243 * 330.00030 * 19 18 17 45 45 H 0.97008 * 119.99496 * 119.21387 * 21 9 8 46 46 H 0.97000 * 119.99783 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0054 5 6 1.9209 3.6048 -0.0003 6 6 3.3019 3.6758 -0.0056 7 6 4.0560 2.5171 -0.0057 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 0.0004 10 1 3.8320 -0.6865 -0.7123 11 6 5.6935 0.3513 -0.3987 12 7 6.5199 -0.8529 -0.2831 13 6 7.8321 -0.8014 -0.5859 14 8 8.3308 0.2456 -0.9550 15 6 8.6580 -2.0082 -0.4760 16 6 9.9917 -2.0961 -0.7554 17 6 10.3680 -3.4264 -0.5131 18 6 9.2614 -4.0842 -0.1022 19 6 9.1955 -5.5426 0.2717 20 8 8.2342 -3.2252 -0.0766 21 7 4.2415 -0.5681 1.3412 22 6 4.7407 0.1364 2.4041 23 1 5.0521 1.1622 2.2736 24 6 4.8463 -0.4680 3.6492 25 7 4.4672 -1.7184 3.8082 26 14 5.5279 0.4929 5.0989 27 1 4.6752 1.6828 5.3489 28 1 5.5372 -0.3724 6.3058 29 1 6.9134 0.9319 4.7946 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3204 0.0101 34 1 1.3340 4.5114 -0.0003 35 1 3.7923 4.6380 -0.0097 36 1 5.1344 2.5751 -0.0095 37 1 6.0854 1.1256 0.2608 38 1 5.7127 0.7075 -1.4287 39 1 6.1223 -1.6875 0.0107 40 1 10.6328 -1.2967 -1.0967 41 1 11.3560 -3.8457 -0.6334 42 1 9.3989 -5.6542 1.3367 43 1 8.2013 -5.9301 0.0492 44 1 9.9385 -6.0983 -0.3002 45 1 3.8798 -1.4581 1.4761 46 1 4.5414 -2.1407 4.6782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198515119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:13 Heat of formation + Delta-G solvation = -13.691048 kcal Electronic energy + Delta-G solvation = -30194.882106 eV Core-core repulsion = 26052.345933 eV Total energy + Delta-G solvation = -4142.536173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.51643 -39.91649 -38.93326 -37.19742 -35.81486 -33.60182 -32.98588 -32.05620 -31.78595 -29.90961 -29.51687 -28.07204 -27.03305 -26.26032 -24.36288 -22.77495 -22.02769 -21.48262 -21.26722 -19.88890 -19.82639 -18.01832 -17.72501 -17.15898 -16.29526 -15.83047 -15.56365 -15.44218 -15.19647 -15.09653 -14.89211 -14.33523 -14.06689 -13.80606 -13.74554 -13.25408 -13.16424 -13.07234 -12.99051 -12.86058 -12.80165 -12.54707 -12.23996 -11.91588 -11.87635 -11.65238 -11.55150 -10.91761 -10.85099 -10.75296 -10.54459 -10.46865 -9.99607 -9.89472 -9.88712 -9.69412 -8.96753 -8.62636 -8.40864 -8.23329 -7.68778 -7.01279 -5.77549 -3.07433 1.28897 1.78303 1.91380 2.45654 2.82200 3.44842 3.48578 3.50734 3.54892 3.68733 3.70872 4.21431 4.61508 4.70310 5.02174 5.06337 5.12902 5.15352 5.31006 5.32525 5.37160 5.39500 5.42929 5.54869 5.60132 5.64601 5.70337 5.72937 5.77510 5.85323 5.91272 5.93613 6.01470 6.09048 6.09796 6.37852 6.45752 6.49058 6.61616 6.72798 6.84976 6.92694 7.02425 7.09492 7.24055 7.73766 7.85133 8.00510 8.38873 8.55428 9.52354 10.01939 10.39169 11.43976 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.003644 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.109217 B = 7681.911142 C = 8581.946121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.144 3.856 4 C -0.215 4.215 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.081 4.081 8 C -0.095 4.095 9 C 0.207 3.793 10 H 0.073 0.927 11 C 0.108 3.892 12 N -0.685 5.685 13 C 0.597 3.403 14 O -0.538 6.538 15 C -0.065 4.065 16 C -0.130 4.130 17 C -0.227 4.227 18 C 0.014 3.986 19 C -0.077 4.077 20 O -0.155 6.155 21 N -0.704 5.704 22 C -0.232 4.232 23 H 0.069 0.931 24 C -0.005 4.005 25 N -0.929 5.929 26 Si 0.898 3.102 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.409 0.591 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.388 0.612 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -2.084 -10.982 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.215 6.215 3 C 0.098 3.902 4 C -0.234 4.234 5 C -0.114 4.114 6 C -0.178 4.178 7 C -0.100 4.100 8 C -0.098 4.098 9 C 0.096 3.904 10 H 0.091 0.909 11 C -0.018 4.018 12 N -0.334 5.334 13 C 0.382 3.618 14 O -0.419 6.419 15 C -0.117 4.117 16 C -0.150 4.150 17 C -0.247 4.247 18 C -0.039 4.039 19 C -0.134 4.134 20 O -0.050 6.050 21 N -0.343 5.343 22 C -0.363 4.363 23 H 0.087 0.913 24 C -0.202 4.202 25 N -0.576 5.576 26 Si 0.730 3.270 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.212 1.212 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.246 0.754 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.222 0.778 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.503 -1.535 -10.989 11.107 hybrid contribution -0.073 0.217 1.356 1.375 sum 0.429 -1.318 -9.633 9.732 Atomic orbital electron populations 1.22950 0.79564 1.03385 1.00581 1.86148 1.20217 1.26789 1.88376 1.18750 0.91722 0.83895 0.95852 1.21090 0.99366 0.92625 1.10294 1.20743 0.94634 0.96485 0.99514 1.20952 0.93849 0.98153 1.04882 1.21047 1.00141 0.91212 0.97557 1.19917 0.90895 0.96748 1.02284 1.19148 0.90368 0.91279 0.89628 0.90906 1.22026 0.92810 0.87065 0.99918 1.45646 1.07840 1.14682 1.65202 1.16511 0.81776 0.85053 0.78423 1.90824 1.72922 1.28757 1.49350 1.22228 0.95197 0.84816 1.09495 1.21861 0.93750 0.97651 1.01773 1.21512 0.99677 0.94093 1.09374 1.22780 0.85807 0.93370 1.01943 1.20386 1.04333 0.85794 1.02874 1.84074 1.37053 1.17871 1.66017 1.42335 1.72454 1.18466 1.01013 1.19035 1.33997 0.95257 0.88028 0.91305 1.24666 1.01807 0.96032 0.97656 1.69644 1.53309 1.11369 1.23323 0.86401 0.79073 0.78974 0.82599 1.21308 1.21782 1.21236 0.93443 0.88711 0.93041 0.86272 0.86741 0.86619 0.85313 0.90733 0.92236 0.75438 0.82512 0.83010 0.89611 0.90115 0.89270 0.77782 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.25 9.81 -19.43 -0.19 -5.44 16 3 C 0.14 2.57 6.66 -39.21 -0.26 2.30 16 4 C -0.21 -3.34 9.04 -39.43 -0.36 -3.69 16 5 C -0.10 -1.40 10.04 -39.61 -0.40 -1.79 16 6 C -0.16 -2.47 10.04 -39.56 -0.40 -2.86 16 7 C -0.08 -1.40 8.81 -39.60 -0.35 -1.75 16 8 C -0.09 -1.76 4.76 -104.47 -0.50 -2.26 16 9 C 0.21 3.97 2.70 -69.08 -0.19 3.79 16 10 H 0.07 1.31 7.97 -51.93 -0.41 0.90 16 11 C 0.11 2.00 3.96 -4.04 -0.02 1.99 16 12 N -0.69 -12.97 5.38 -61.63 -0.33 -13.30 16 13 C 0.60 11.60 7.79 -12.87 -0.10 11.50 16 14 O -0.54 -11.49 16.86 5.19 0.09 -11.40 16 15 C -0.07 -1.14 7.13 -36.80 -0.26 -1.40 16 16 C -0.13 -1.97 10.62 -39.39 -0.42 -2.39 16 17 C -0.23 -2.91 10.77 -39.89 -0.43 -3.34 16 18 C 0.01 0.18 7.31 -35.41 -0.26 -0.08 16 19 C -0.08 -0.70 10.41 36.01 0.37 -0.32 16 20 O -0.15 -2.58 10.40 5.00 0.05 -2.53 16 21 N -0.70 -16.31 4.72 -54.56 -0.26 -16.57 16 22 C -0.23 -6.11 8.78 -15.06 -0.13 -6.24 16 23 H 0.07 1.83 7.08 -52.49 -0.37 1.46 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -27.00 13.07 55.49 0.73 -26.28 16 26 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 33 H 0.12 1.54 6.30 -52.49 -0.33 1.21 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.13 2.17 5.83 -52.48 -0.31 1.86 16 37 H 0.07 1.53 5.88 -51.93 -0.31 1.23 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.41 7.76 7.89 -40.82 -0.32 7.44 16 40 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 41 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.39 9.68 8.05 -40.82 -0.33 9.35 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -32.67 390.83 -7.96 -40.63 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.11 Total: 16.79 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.79 Total: -5.43 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.14 Total: -56.15 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.67 -7.96 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198515119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.939 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds