Wall clock time and date at job start Wed Apr 1 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99852 * 2 1 4 4 C 1.38757 * 120.05995 * 0.25889 * 3 2 1 5 5 C 1.38120 * 119.94289 * 180.27375 * 4 3 2 6 6 C 1.38283 * 120.05866 * 359.72134 * 5 4 3 7 7 C 1.38245 * 120.11197 * 0.02562 * 6 5 4 8 8 C 1.38172 * 120.05545 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.02724 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.46946 * 224.18865 * 9 8 7 11 11 C 1.52992 * 109.47152 * 344.19395 * 9 8 7 12 12 N 1.46504 * 109.47371 * 174.99987 * 11 9 8 13 13 C 1.34771 * 120.00512 * 179.97438 * 12 11 9 14 14 O 1.21694 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.46653 * 120.00133 * 180.27716 * 13 12 11 16 16 C 1.36545 * 125.98821 * 179.72498 * 15 13 12 17 17 C 1.40364 * 106.70679 * 179.97438 * 16 15 13 18 18 C 1.35126 * 107.11585 * 0.02562 * 17 16 15 19 19 C 1.50705 * 125.61285 * 180.02562 * 18 17 16 20 20 O 1.33926 * 108.76927 * 359.76633 * 18 17 16 21 21 N 1.46503 * 109.46807 * 104.19061 * 9 8 7 22 22 C 1.36939 * 120.00303 * 299.21557 * 21 9 8 23 23 H 1.07996 * 119.99896 * 6.11236 * 22 21 9 24 24 C 1.38806 * 119.99723 * 186.10978 * 22 21 9 25 25 N 1.31620 * 120.00324 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99667 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46891 * 60.00631 * 26 24 22 28 28 H 1.48503 * 109.47042 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47693 * 300.00286 * 26 24 22 30 30 H 1.09004 * 109.47000 * 59.99391 * 1 2 3 31 31 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46889 * 299.99963 * 1 2 3 33 33 H 1.08000 * 120.02368 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.96884 * 179.74213 * 5 4 3 35 35 H 1.07996 * 119.94785 * 180.02562 * 6 5 4 36 36 H 1.08003 * 119.97763 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47340 * 54.99908 * 11 9 8 38 38 H 1.09003 * 109.47315 * 294.99630 * 11 9 8 39 39 H 0.97009 * 119.99342 * 0.02562 * 12 11 9 40 40 H 1.08005 * 126.64787 * 359.97438 * 16 15 13 41 41 H 1.08005 * 126.43991 * 179.97438 * 17 16 15 42 42 H 1.08997 * 109.47241 * 90.00289 * 19 18 17 43 43 H 1.09003 * 109.46629 * 209.99818 * 19 18 17 44 44 H 1.08997 * 109.47243 * 330.00030 * 19 18 17 45 45 H 0.97008 * 119.99496 * 119.21387 * 21 9 8 46 46 H 0.97000 * 119.99783 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0054 5 6 1.9209 3.6048 -0.0003 6 6 3.3019 3.6758 -0.0056 7 6 4.0560 2.5171 -0.0057 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 0.0004 10 1 3.8320 -0.6865 -0.7123 11 6 5.6935 0.3513 -0.3987 12 7 6.5199 -0.8529 -0.2831 13 6 7.8321 -0.8014 -0.5859 14 8 8.3308 0.2456 -0.9550 15 6 8.6580 -2.0082 -0.4760 16 6 9.9917 -2.0961 -0.7554 17 6 10.3680 -3.4264 -0.5131 18 6 9.2614 -4.0842 -0.1022 19 6 9.1955 -5.5426 0.2717 20 8 8.2342 -3.2252 -0.0766 21 7 4.2415 -0.5681 1.3412 22 6 4.7407 0.1364 2.4041 23 1 5.0521 1.1622 2.2736 24 6 4.8463 -0.4680 3.6492 25 7 4.4672 -1.7184 3.8082 26 14 5.5279 0.4929 5.0989 27 1 4.6752 1.6828 5.3489 28 1 5.5372 -0.3724 6.3058 29 1 6.9134 0.9319 4.7946 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3204 0.0101 34 1 1.3340 4.5114 -0.0003 35 1 3.7923 4.6380 -0.0097 36 1 5.1344 2.5751 -0.0095 37 1 6.0854 1.1256 0.2608 38 1 5.7127 0.7075 -1.4287 39 1 6.1223 -1.6875 0.0107 40 1 10.6328 -1.2967 -1.0967 41 1 11.3560 -3.8457 -0.6334 42 1 9.3989 -5.6542 1.3367 43 1 8.2013 -5.9301 0.0492 44 1 9.9385 -6.0983 -0.3002 45 1 3.8798 -1.4581 1.4761 46 1 4.5414 -2.1407 4.6782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198515119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:12 Heat of formation + Delta-G solvation = -35.210620 kcal Electronic energy + Delta-G solvation = -30195.815265 eV Core-core repulsion = 26052.345933 eV Total energy + Delta-G solvation = -4143.469332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.68342 -41.22164 -40.41635 -38.52635 -37.32959 -35.22153 -34.25242 -33.68345 -32.86396 -31.45741 -30.84723 -29.44803 -28.10380 -27.56054 -26.12747 -24.26703 -23.29913 -22.66877 -22.49079 -21.38585 -21.12811 -19.39980 -19.34695 -18.67490 -17.53928 -17.29236 -17.05536 -16.74751 -16.46831 -16.33614 -16.19665 -16.06579 -15.53059 -15.34358 -15.23343 -14.70026 -14.32257 -14.27920 -14.01765 -13.95382 -13.87199 -13.79607 -13.57439 -13.40906 -13.08598 -12.87322 -12.76960 -12.74414 -12.69515 -12.27873 -11.88385 -11.85368 -11.75564 -11.61689 -11.43506 -11.02834 -10.93636 -10.13701 -9.71268 -9.43019 -9.09678 -8.84740 -7.89904 -5.16743 0.02778 0.51025 0.65119 1.36614 1.42127 1.43471 1.48156 1.65803 2.12659 2.29178 2.54954 2.56743 2.95003 3.41831 3.64761 3.82284 3.92030 3.97112 4.01319 4.03204 4.23730 4.30834 4.36583 4.42438 4.44616 4.53776 4.58779 4.61273 4.64850 4.72044 4.73128 4.75539 4.77139 4.83647 4.94882 5.09086 5.13403 5.18462 5.35101 5.49183 5.54308 5.57949 5.61620 5.73685 5.90883 6.01573 6.29955 6.49892 6.64675 7.03665 7.39529 8.06707 8.35076 9.32042 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.003644 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.109217 B = 7681.911142 C = 8581.946121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.330 6.330 3 C 0.126 3.874 4 C -0.217 4.217 5 C -0.089 4.089 6 C -0.165 4.165 7 C -0.095 4.095 8 C -0.125 4.125 9 C 0.214 3.786 10 H 0.080 0.920 11 C 0.118 3.882 12 N -0.688 5.688 13 C 0.594 3.406 14 O -0.567 6.567 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.226 4.226 18 C 0.015 3.985 19 C -0.078 4.078 20 O -0.177 6.177 21 N -0.707 5.707 22 C -0.209 4.209 23 H 0.064 0.936 24 C -0.063 4.063 25 N -0.958 5.958 26 Si 0.947 3.053 27 H -0.283 1.283 28 H -0.295 1.295 29 H -0.289 1.289 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.124 0.876 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.408 0.592 40 H 0.166 0.834 41 H 0.191 0.809 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.377 0.623 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 -1.840 -11.691 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.243 6.243 3 C 0.080 3.920 4 C -0.235 4.235 5 C -0.107 4.107 6 C -0.183 4.183 7 C -0.114 4.114 8 C -0.128 4.128 9 C 0.104 3.896 10 H 0.098 0.902 11 C -0.008 4.008 12 N -0.335 5.335 13 C 0.381 3.619 14 O -0.450 6.450 15 C -0.162 4.162 16 C -0.141 4.141 17 C -0.244 4.244 18 C -0.037 4.037 19 C -0.134 4.134 20 O -0.073 6.073 21 N -0.345 5.345 22 C -0.341 4.341 23 H 0.082 0.918 24 C -0.256 4.256 25 N -0.609 5.609 26 Si 0.778 3.222 27 H -0.210 1.210 28 H -0.221 1.221 29 H -0.216 1.216 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.244 0.756 40 H 0.183 0.817 41 H 0.208 0.792 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.142 0.858 45 H 0.210 0.790 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.448 -1.259 -11.736 11.812 hybrid contribution -0.080 0.122 1.451 1.458 sum 0.368 -1.137 -10.285 10.355 Atomic orbital electron populations 1.23230 0.77296 1.04918 1.01742 1.86103 1.22712 1.27052 1.88457 1.18982 0.91739 0.84960 0.96301 1.21449 1.00741 0.92104 1.09235 1.21204 0.94575 0.97572 0.97353 1.21283 0.94500 0.98428 1.04050 1.21147 1.00236 0.91778 0.98195 1.19838 0.91602 0.96440 1.04917 1.19202 0.90646 0.92067 0.87645 0.90203 1.21900 0.92152 0.86544 1.00167 1.45682 1.08055 1.14540 1.65247 1.16806 0.81787 0.85639 0.77669 1.90780 1.73392 1.30032 1.50817 1.21953 0.95903 0.84971 1.13367 1.22208 0.92867 0.99170 0.99876 1.21932 1.01189 0.92712 1.08591 1.23797 0.85233 0.94677 0.99993 1.20657 1.05717 0.83057 1.03952 1.84053 1.38648 1.18010 1.66627 1.42331 1.72257 1.17926 1.01997 1.19163 1.31500 0.94863 0.88608 0.91789 1.25217 1.03703 0.96935 0.99726 1.69762 1.55575 1.12455 1.23097 0.85615 0.78267 0.77915 0.80425 1.20986 1.22141 1.21592 0.91078 0.87200 0.92887 0.83623 0.83127 0.84132 0.85850 0.92829 0.90795 0.75620 0.81658 0.79224 0.88689 0.89905 0.85826 0.79035 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.65 16 2 O -0.33 -11.33 9.81 -92.44 -0.91 -12.24 16 3 C 0.13 4.42 6.66 22.51 0.15 4.57 16 4 C -0.22 -6.23 9.04 22.37 0.20 -6.03 16 5 C -0.09 -2.34 10.04 22.25 0.22 -2.12 16 6 C -0.16 -4.76 10.04 22.28 0.22 -4.54 16 7 C -0.09 -3.28 8.81 22.26 0.20 -3.09 16 8 C -0.12 -4.69 4.76 -19.77 -0.09 -4.78 16 9 C 0.21 8.47 2.70 44.24 0.12 8.59 16 10 H 0.08 2.99 7.97 -2.39 -0.02 2.97 16 11 C 0.12 4.58 3.96 86.38 0.34 4.92 16 12 N -0.69 -27.30 5.38 -467.11 -2.51 -29.81 16 13 C 0.59 24.08 7.79 86.44 0.67 24.75 16 14 O -0.57 -25.17 16.86 -4.33 -0.07 -25.24 16 15 C -0.11 -3.97 7.13 24.07 0.17 -3.80 16 16 C -0.12 -3.60 10.62 22.39 0.24 -3.37 16 17 C -0.23 -5.28 10.77 22.07 0.24 -5.04 16 18 C 0.02 0.39 7.31 24.97 0.18 0.57 16 19 C -0.08 -1.20 10.41 71.24 0.74 -0.46 16 20 O -0.18 -5.98 10.40 -5.02 -0.05 -6.03 16 21 N -0.71 -33.82 4.72 -326.52 -1.54 -35.37 16 22 C -0.21 -11.26 8.78 84.03 0.74 -10.53 16 23 H 0.06 3.48 7.08 -2.91 -0.02 3.46 16 24 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 25 N -0.96 -57.16 13.07 21.65 0.28 -56.87 16 26 Si 0.95 47.41 29.55 68.60 2.03 49.44 16 27 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 29 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 30 H 0.07 1.31 7.67 -2.39 -0.02 1.29 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.21 7.65 -2.39 -0.02 1.20 16 33 H 0.15 3.30 6.30 -2.91 -0.02 3.29 16 34 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.12 4.28 5.83 -2.91 -0.02 4.26 16 37 H 0.05 2.31 5.88 -2.39 -0.01 2.29 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.41 16.34 7.89 -92.70 -0.73 15.61 16 40 H 0.17 4.52 8.06 -2.91 -0.02 4.49 16 41 H 0.19 2.87 8.06 -2.91 -0.02 2.84 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.38 19.54 8.05 -92.70 -0.75 18.80 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -72.86 390.83 2.70 -70.16 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.44 Total: 47.79 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.92 Total: -1.83 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -3.77 Total: -122.05 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.03 Total: -43.52 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -72.86 2.70 -70.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198515119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.951 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds