Wall clock time and date at job start Wed Apr 1 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47147 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47120 * 119.99769 * 3 2 1 6 6 H 1.48495 * 109.46907 * 240.00100 * 3 2 1 7 7 C 1.38804 * 119.99916 * 180.27530 * 2 1 3 8 8 H 1.08002 * 120.00210 * 179.72699 * 7 2 1 9 9 N 1.36934 * 120.00110 * 359.72547 * 7 2 1 10 10 C 1.46500 * 120.00473 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47464 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46886 * 59.99697 * 11 10 9 13 13 C 1.54810 * 109.46774 * 179.97438 * 11 10 9 14 14 N 1.45130 * 109.53346 * 187.88747 * 13 11 10 15 15 C 1.34777 * 118.75676 * 90.71530 * 14 13 11 16 16 O 1.21563 * 120.00300 * 174.33520 * 15 14 13 17 17 C 1.47711 * 119.99792 * 354.33107 * 15 14 13 18 18 C 1.41504 * 126.51517 * 173.85721 * 17 15 14 19 19 C 1.35374 * 105.50110 * 180.02562 * 18 17 15 20 20 N 1.35031 * 107.22796 * 0.02562 * 19 18 17 21 21 C 1.46496 * 124.88223 * 180.02562 * 20 19 18 22 22 F 1.39902 * 109.47284 * 299.99768 * 21 20 19 23 23 F 1.39895 * 109.47308 * 59.99861 * 21 20 19 24 24 N 1.28469 * 110.23169 * 359.72370 * 20 19 18 25 25 C 1.47508 * 122.48710 * 270.70903 * 14 13 11 26 26 C 1.53570 * 111.02466 * 41.62902 * 25 14 13 27 27 C 1.51534 * 109.58508 * 39.97816 * 26 25 14 28 28 O 1.38016 * 109.47163 * 299.99860 * 11 10 9 29 29 H 0.96997 * 120.00010 * 180.02562 * 1 2 3 30 30 H 0.96999 * 120.00140 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.46937 * 300.00321 * 10 9 7 32 32 H 1.09001 * 109.46942 * 59.99564 * 10 9 7 33 33 H 1.08996 * 109.45891 * 307.90354 * 13 11 10 34 34 H 1.08994 * 109.46284 * 67.87155 * 13 11 10 35 35 H 1.07995 * 127.25092 * 0.02562 * 18 17 15 36 36 H 1.07998 * 126.38371 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47013 * 179.97438 * 21 20 19 38 38 H 1.09008 * 109.16534 * 281.23221 * 25 14 13 39 39 H 1.08990 * 109.12406 * 162.00220 * 25 14 13 40 40 H 1.09006 * 109.45200 * 279.94394 * 26 25 14 41 41 H 1.08999 * 109.43689 * 160.00670 * 26 25 14 42 42 H 1.08996 * 109.59195 * 148.81049 * 27 26 25 43 43 H 1.09001 * 109.58175 * 28.38311 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2021 -0.0102 9 7 1.3256 -2.3880 -0.0058 10 6 2.0580 -3.6567 -0.0113 11 6 1.0637 -4.8196 -0.0095 12 1 0.4334 -4.7601 -0.8967 13 6 1.8378 -6.1603 -0.0160 14 7 0.9064 -7.2576 -0.2020 15 6 0.6366 -7.6737 -1.4552 16 8 -0.0584 -8.6550 -1.6334 17 6 1.1852 -6.9372 -2.6121 18 6 1.0932 -7.3165 -3.9722 19 6 1.7358 -6.3456 -4.6629 20 7 2.1830 -5.4437 -3.7628 21 6 2.9338 -4.2304 -4.0947 22 9 4.1217 -4.5804 -4.7456 23 9 2.1629 -3.4202 -4.9352 24 7 1.8498 -5.7995 -2.5742 25 6 0.2439 -7.9347 0.9287 26 6 -0.2154 -6.9201 1.9861 27 6 -0.7749 -5.6900 1.3004 28 8 0.2750 -4.7487 1.1209 29 1 -0.4850 -0.8400 0.0004 30 1 0.3556 -2.3880 -0.0014 31 1 2.6813 -3.7125 -0.9038 32 1 2.6880 -3.7164 0.8761 33 1 2.5625 -6.1572 -0.8301 34 1 2.3589 -6.2833 0.9334 35 1 0.6117 -8.1955 -4.3746 36 1 1.8665 -6.3008 -5.7340 37 1 3.1673 -3.6859 -3.1798 38 1 0.9427 -8.6358 1.3852 39 1 -0.6224 -8.4829 0.5587 40 1 0.6331 -6.6346 2.6080 41 1 -0.9873 -7.3706 2.6100 42 1 -1.5575 -5.2509 1.9191 43 1 -1.1862 -5.9680 0.3300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200589787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:41 Heat of formation + Delta-G solvation = -49.359720 kcal Electronic energy + Delta-G solvation = -32128.524291 eV Core-core repulsion = 27462.504629 eV Total energy + Delta-G solvation = -4666.019662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.63554 -47.71390 -42.96161 -40.39244 -38.52536 -35.48292 -34.97693 -33.59797 -32.81435 -31.16266 -30.84589 -28.64843 -27.36049 -26.33589 -24.95862 -23.52883 -22.66129 -21.88985 -21.22898 -21.02909 -19.53467 -18.79775 -18.21257 -17.74144 -17.32449 -17.21786 -16.73461 -16.47269 -15.93910 -15.57196 -15.23417 -14.73151 -14.58255 -14.46182 -14.11630 -14.03623 -13.88595 -13.72225 -13.68795 -13.52849 -13.40368 -13.11104 -12.59316 -12.55250 -12.35027 -12.19611 -11.80632 -11.39414 -10.95110 -10.88745 -10.72593 -10.56439 -10.45562 -10.17796 -9.98739 -9.77185 -9.51800 -9.41761 -9.19440 -8.87605 -8.59799 -6.96719 -6.07611 -3.06744 1.16548 1.46918 1.79183 2.76391 3.15976 3.26608 3.51166 3.55161 3.72762 3.81167 3.92887 4.20600 4.30631 4.39091 4.63918 4.69572 4.78564 4.85531 5.04261 5.13938 5.20581 5.29443 5.38711 5.39982 5.49303 5.59088 5.64038 5.65380 5.75664 5.83739 5.98471 6.05692 6.07973 6.12264 6.20485 6.38908 6.50883 6.68952 7.11675 7.44237 7.79402 7.92806 7.98344 8.79229 9.26667 10.13457 10.29667 11.41034 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.005043 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.811196 B = 5550.669229 C = 8215.656833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.333 4.333 8 H 0.063 0.937 9 N -0.736 5.736 10 C 0.179 3.821 11 C 0.094 3.906 12 H 0.050 0.950 13 C 0.071 3.929 14 N -0.596 5.596 15 C 0.600 3.400 16 O -0.533 6.533 17 C 0.001 3.999 18 C -0.170 4.170 19 C 0.000 4.000 20 N -0.342 5.342 21 C 0.494 3.506 22 F -0.176 7.176 23 F -0.169 7.169 24 N -0.229 5.229 25 C 0.112 3.888 26 C -0.165 4.165 27 C 0.073 3.927 28 O -0.372 6.372 29 H 0.256 0.744 30 H 0.370 0.630 31 H 0.029 0.971 32 H 0.025 0.975 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.168 0.832 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 -16.781 -5.637 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.464 4.464 8 H 0.081 0.919 9 N -0.382 5.382 10 C 0.051 3.949 11 C 0.034 3.966 12 H 0.068 0.932 13 C -0.053 4.053 14 N -0.328 5.328 15 C 0.386 3.614 16 O -0.408 6.408 17 C -0.162 4.162 18 C -0.197 4.197 19 C -0.140 4.140 20 N -0.139 5.139 21 C 0.361 3.639 22 F -0.157 7.157 23 F -0.150 7.150 24 N -0.063 5.063 25 C -0.009 4.009 26 C -0.203 4.203 27 C -0.004 4.004 28 O -0.290 6.290 29 H 0.067 0.933 30 H 0.204 0.796 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.186 0.814 36 H 0.204 0.796 37 H 0.195 0.805 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.715 -14.552 -4.934 16.073 hybrid contribution -0.316 -2.454 -0.988 2.664 sum 4.399 -17.006 -5.922 18.537 Atomic orbital electron populations 1.70852 1.06072 1.28576 1.53257 1.25733 0.97051 1.00883 1.00490 0.83267 0.74228 0.75759 0.75791 1.21066 1.22286 1.22332 1.19991 0.91854 0.85812 1.48714 0.91882 1.42231 1.05081 1.00395 1.90478 1.20450 0.92185 0.84213 0.98077 1.22212 0.92493 0.93935 0.87964 0.93203 1.22853 0.92470 0.86072 1.03945 1.47786 1.44519 1.34884 1.05573 1.17032 0.79884 0.82969 0.81510 1.90774 1.39007 1.25879 1.85117 1.22071 1.04279 0.94483 0.95345 1.21814 1.04855 1.01918 0.91121 1.23011 1.01592 0.91472 0.97941 1.46764 1.42321 1.19656 1.05129 1.21392 0.73263 0.78071 0.91167 1.93137 1.46040 1.92329 1.84201 1.93171 1.75890 1.71412 1.74519 1.73925 1.14810 1.14118 1.03399 1.21878 0.98155 0.94539 0.86327 1.22502 1.02680 0.96822 0.98345 1.22129 0.89758 0.88967 0.99513 1.86414 1.44943 1.54484 1.43146 0.93252 0.79636 0.95367 0.95730 0.87590 0.89827 0.81420 0.79634 0.80537 0.91368 0.89064 0.90000 0.89530 0.89225 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.32 13.70 55.49 0.76 -28.56 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 3 Si 1.08 25.66 29.92 -169.99 -5.09 20.57 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.30 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.33 -9.24 9.99 -15.06 -0.15 -9.39 16 8 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.74 -18.53 5.49 -59.91 -0.33 -18.86 16 10 C 0.18 3.54 5.95 -4.04 -0.02 3.52 16 11 C 0.09 1.59 2.04 -25.78 -0.05 1.54 16 12 H 0.05 0.93 7.27 -51.93 -0.38 0.56 16 13 C 0.07 0.97 4.41 -3.82 -0.02 0.96 16 14 N -0.60 -7.97 2.19 -173.63 -0.38 -8.35 16 15 C 0.60 8.86 7.63 -12.39 -0.09 8.76 16 16 O -0.53 -8.80 16.28 5.31 0.09 -8.71 16 17 C 0.00 0.01 6.67 -82.76 -0.55 -0.54 16 18 C -0.17 -1.98 10.81 -39.36 -0.43 -2.40 16 19 C 0.00 0.00 11.33 -17.17 -0.19 -0.20 16 20 N -0.34 -4.15 3.56 -66.62 -0.24 -4.38 16 21 C 0.49 5.44 6.24 59.84 0.37 5.81 16 22 F -0.18 -1.81 17.46 2.25 0.04 -1.77 16 23 F -0.17 -2.11 17.46 2.25 0.04 -2.07 16 24 N -0.23 -3.14 7.19 33.42 0.24 -2.90 16 25 C 0.11 1.27 6.12 -3.19 -0.02 1.25 16 26 C -0.17 -1.79 5.78 -27.18 -0.16 -1.95 16 27 C 0.07 1.02 6.37 36.42 0.23 1.25 16 28 O -0.37 -6.59 9.18 -26.54 -0.24 -6.84 16 29 H 0.26 7.95 6.77 -40.82 -0.28 7.68 16 30 H 0.37 9.91 6.36 -40.82 -0.26 9.65 16 31 H 0.03 0.52 7.87 -51.93 -0.41 0.12 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.11 1.43 5.33 -51.93 -0.28 1.15 16 34 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.18 1.84 7.87 -51.93 -0.41 1.43 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.09 1.06 7.06 -51.93 -0.37 0.70 16 40 H 0.08 0.93 8.02 -51.93 -0.42 0.51 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -34.55 361.17 -6.19 -40.74 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.34 Total: 8.44 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.18 Total: 7.26 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.05 Total: -63.05 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.16 Total: -15.55 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.09 Total: 20.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.55 -6.19 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200589787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.623 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds