Wall clock time and date at job start Wed Apr 1 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00371 * 2 1 4 4 H 1.48503 * 109.47159 * 269.99925 * 3 2 1 5 5 H 1.48501 * 109.47163 * 29.99780 * 3 2 1 6 6 H 1.48503 * 109.47163 * 149.99796 * 3 2 1 7 7 C 1.38814 * 119.99453 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00433 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99513 * 179.97438 * 7 2 1 10 10 C 1.46509 * 119.99623 * 180.27817 * 9 7 2 11 11 C 1.52997 * 109.46806 * 179.72924 * 10 9 7 12 12 H 1.09004 * 109.47064 * 304.99161 * 11 10 9 13 13 C 1.54815 * 109.46734 * 185.00080 * 11 10 9 14 14 N 1.45123 * 109.53459 * 172.11992 * 13 11 10 15 15 C 1.34771 * 118.75908 * 269.25543 * 14 13 11 16 16 O 1.21568 * 120.00533 * 176.82541 * 15 14 13 17 17 C 1.47721 * 119.99825 * 356.82481 * 15 14 13 18 18 C 1.41494 * 126.51551 * 186.53424 * 17 15 14 19 19 C 1.35368 * 105.50242 * 179.97438 * 18 17 15 20 20 N 1.35030 * 107.22542 * 359.97438 * 19 18 17 21 21 C 1.46500 * 124.88179 * 179.97438 * 20 19 18 22 22 F 1.39895 * 109.47167 * 300.00113 * 21 20 19 23 23 F 1.39900 * 109.47095 * 60.00364 * 21 20 19 24 24 N 1.28470 * 110.23407 * 359.75251 * 20 19 18 25 25 C 1.47510 * 122.48607 * 89.28638 * 14 13 11 26 26 C 1.53574 * 111.02957 * 318.36503 * 25 14 13 27 27 C 1.51544 * 109.57497 * 320.02128 * 26 25 14 28 28 O 1.38016 * 109.47173 * 64.99233 * 11 10 9 29 29 H 0.97003 * 119.99784 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00350 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47149 * 299.72473 * 10 9 7 32 32 H 1.08997 * 109.47172 * 59.72537 * 10 9 7 33 33 H 1.08997 * 109.45471 * 292.13746 * 13 11 10 34 34 H 1.08993 * 109.45875 * 52.09848 * 13 11 10 35 35 H 1.08004 * 127.24972 * 359.97438 * 18 17 15 36 36 H 1.07994 * 126.38417 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47203 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.16756 * 78.76134 * 25 14 13 39 39 H 1.09000 * 109.16745 * 197.96646 * 25 14 13 40 40 H 1.08995 * 109.45589 * 80.05215 * 26 25 14 41 41 H 1.09000 * 109.45104 * 199.99244 * 26 25 14 42 42 H 1.09001 * 109.58844 * 211.18348 * 27 26 25 43 43 H 1.09001 * 109.59067 * 331.62083 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4711 -0.0056 11 6 5.6162 -2.1915 -0.0118 12 1 5.8619 -1.5442 -0.8537 13 6 6.3885 -3.5266 -0.1449 14 7 7.8006 -3.2532 -0.3381 15 6 8.2702 -3.1244 -1.5948 16 8 9.4369 -2.8382 -1.7815 17 6 7.3672 -3.3310 -2.7454 18 6 7.7363 -3.3586 -4.1111 19 6 6.5867 -3.5744 -4.7924 20 7 5.5941 -3.6697 -3.8818 21 6 4.1835 -3.9025 -4.2014 22 9 3.7121 -2.8657 -5.0137 23 9 4.0534 -5.1205 -4.8773 24 7 6.0654 -3.5313 -2.6947 25 6 8.7416 -3.1115 0.7890 26 6 8.1154 -2.2970 1.9306 27 6 7.3173 -1.1451 1.3540 28 8 5.9733 -1.5688 1.1670 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 -0.0004 31 1 3.8527 -3.0442 0.8845 32 1 3.8446 -3.0410 -0.8954 33 1 6.2535 -4.1161 0.7619 34 1 6.0062 -4.0836 -1.0003 35 1 8.7268 -3.2338 -4.5232 36 1 6.4828 -3.6554 -5.8643 37 1 3.6026 -3.9343 -3.2796 38 1 9.0076 -4.1014 1.1598 39 1 9.6428 -2.6063 0.4415 40 1 7.4563 -2.9387 2.5152 41 1 8.9046 -1.9063 2.5730 42 1 7.3419 -0.3018 2.0442 43 1 7.7437 -0.8484 0.3958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200589795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:43 Heat of formation + Delta-G solvation = -44.809324 kcal Electronic energy + Delta-G solvation = -32013.091720 eV Core-core repulsion = 27347.269378 eV Total energy + Delta-G solvation = -4665.822342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.66484 -47.74393 -42.99969 -40.43252 -38.56456 -35.50828 -34.98092 -33.55649 -32.78186 -31.33099 -31.00808 -29.09809 -27.39660 -26.47981 -25.30267 -23.58096 -22.29188 -21.91452 -21.23615 -21.05845 -19.61118 -18.79721 -18.24237 -17.77925 -17.69567 -17.20036 -16.81011 -16.55897 -15.93793 -15.50965 -15.13679 -14.75132 -14.65606 -14.47313 -14.34975 -14.06875 -13.93819 -13.79533 -13.66287 -13.51547 -13.38471 -12.82438 -12.63528 -12.46875 -12.37084 -12.32175 -12.10147 -11.44161 -11.26230 -10.89976 -10.86765 -10.72482 -10.47700 -10.21283 -10.07570 -9.82072 -9.59303 -9.55449 -9.49612 -8.90146 -8.63849 -7.21527 -5.76663 -3.11110 1.12229 1.43138 1.76501 2.73877 3.13210 3.23355 3.39937 3.46693 3.47428 3.76763 3.85845 4.17152 4.27067 4.35883 4.61372 4.62420 4.74057 4.80619 5.01771 5.08088 5.15327 5.25971 5.34218 5.34664 5.47494 5.53035 5.56332 5.62713 5.68731 5.75041 5.90480 5.93453 6.03313 6.09442 6.20648 6.39483 6.47643 6.64671 7.08791 7.41487 7.86458 7.93833 7.98556 8.42514 9.22110 9.95211 10.15820 11.41575 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.007962 B = 0.005456 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.035425 B = 5130.833031 C = 7774.317638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.176 3.824 11 C 0.090 3.910 12 H 0.047 0.953 13 C 0.058 3.942 14 N -0.595 5.595 15 C 0.599 3.401 16 O -0.533 6.533 17 C 0.006 3.994 18 C -0.170 4.170 19 C 0.003 3.997 20 N -0.344 5.344 21 C 0.494 3.506 22 F -0.168 7.168 23 F -0.176 7.176 24 N -0.233 5.233 25 C 0.110 3.890 26 C -0.165 4.165 27 C 0.072 3.928 28 O -0.373 6.373 29 H 0.259 0.741 30 H 0.364 0.636 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.168 0.832 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.069 -10.561 -6.051 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.048 3.952 11 C 0.030 3.970 12 H 0.065 0.935 13 C -0.066 4.066 14 N -0.326 5.326 15 C 0.385 3.615 16 O -0.408 6.408 17 C -0.157 4.157 18 C -0.198 4.198 19 C -0.137 4.137 20 N -0.140 5.140 21 C 0.361 3.639 22 F -0.149 7.149 23 F -0.157 7.157 24 N -0.066 5.066 25 C -0.011 4.011 26 C -0.203 4.203 27 C -0.005 4.005 28 O -0.291 6.291 29 H 0.069 0.931 30 H 0.196 0.804 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.186 0.814 36 H 0.204 0.796 37 H 0.195 0.805 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.260 -10.605 -5.335 20.133 hybrid contribution 1.281 1.247 -0.992 2.044 sum 17.541 -9.358 -6.327 20.864 Atomic orbital electron populations 1.69698 1.05071 1.25818 1.57637 1.24626 0.95178 0.97144 1.01979 0.86593 0.79581 0.85044 0.77736 1.21255 1.21732 1.19967 1.19024 0.80517 0.94666 1.43024 0.89201 1.42605 1.03896 1.02108 1.90970 1.20512 0.85679 0.89974 0.99010 1.22271 0.96095 0.91752 0.86921 0.93529 1.23133 0.78932 0.99476 1.05078 1.47781 1.09863 1.69639 1.05356 1.17058 0.85920 0.76965 0.81533 1.90777 1.16615 1.48527 1.84913 1.22081 0.90105 1.08253 0.95284 1.21810 0.99707 1.07116 0.91127 1.23012 0.87566 1.05366 0.97805 1.46831 1.08514 1.53695 1.04935 1.21374 0.78883 0.72221 0.91425 1.93179 1.86899 1.58748 1.76098 1.93141 1.94859 1.44570 1.83149 1.73744 1.11481 1.17931 1.03492 1.21891 0.92530 1.00699 0.85984 1.22486 1.00957 0.98922 0.97921 1.22150 0.82521 0.95729 1.00086 1.86411 1.27165 1.76930 1.38633 0.93093 0.80366 0.94705 0.94389 0.89714 0.85989 0.81404 0.79603 0.80522 0.91338 0.88921 0.89927 0.89572 0.89284 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.51 27.73 -169.99 -4.71 17.79 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.27 -6.76 6.52 56.52 0.37 -6.39 16 7 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.75 -17.89 5.34 -59.90 -0.32 -18.21 16 10 C 0.18 3.31 5.92 -4.04 -0.02 3.28 16 11 C 0.09 1.44 2.29 -25.78 -0.06 1.39 16 12 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 13 C 0.06 0.75 4.46 -3.82 -0.02 0.74 16 14 N -0.59 -7.55 2.19 -173.62 -0.38 -7.93 16 15 C 0.60 8.48 7.64 -12.39 -0.09 8.38 16 16 O -0.53 -8.54 16.22 5.31 0.09 -8.45 16 17 C 0.01 0.07 6.80 -82.77 -0.56 -0.49 16 18 C -0.17 -1.88 10.81 -39.37 -0.43 -2.31 16 19 C 0.00 0.03 11.33 -17.17 -0.19 -0.17 16 20 N -0.34 -3.85 3.56 -66.63 -0.24 -4.09 16 21 C 0.49 4.88 6.24 59.85 0.37 5.25 16 22 F -0.17 -1.95 17.46 2.25 0.04 -1.91 16 23 F -0.18 -1.66 17.46 2.25 0.04 -1.62 16 24 N -0.23 -2.98 7.92 33.42 0.26 -2.71 16 25 C 0.11 1.17 6.17 -3.19 -0.02 1.15 16 26 C -0.16 -1.67 5.79 -27.17 -0.16 -1.82 16 27 C 0.07 0.94 6.38 36.42 0.23 1.18 16 28 O -0.37 -6.25 9.38 -26.54 -0.25 -6.50 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.36 8.85 5.52 -40.82 -0.23 8.62 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.12 1.55 4.66 -55.83 -0.26 1.29 16 35 H 0.17 1.58 8.06 -52.48 -0.42 1.15 16 36 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.18 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.03 6.96 -51.93 -0.36 0.67 16 40 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -34.72 361.84 -5.91 -40.63 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.46 Total: 6.18 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -1.20 Total: 9.75 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.10 Total: -61.32 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.16 Total: -14.95 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.54 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.72 -5.91 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200589795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.179 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds