Wall clock time and date at job start Wed Apr 1 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00371 * 2 1 4 4 H 1.48503 * 109.47159 * 269.99925 * 3 2 1 5 5 H 1.48501 * 109.47163 * 29.99780 * 3 2 1 6 6 H 1.48503 * 109.47163 * 149.99796 * 3 2 1 7 7 C 1.38814 * 119.99453 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00433 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99513 * 179.97438 * 7 2 1 10 10 C 1.46509 * 119.99623 * 180.27817 * 9 7 2 11 11 C 1.52997 * 109.46806 * 179.72924 * 10 9 7 12 12 H 1.09004 * 109.47064 * 304.99161 * 11 10 9 13 13 C 1.54815 * 109.46734 * 185.00080 * 11 10 9 14 14 N 1.45123 * 109.53459 * 172.11992 * 13 11 10 15 15 C 1.34771 * 118.75908 * 269.25543 * 14 13 11 16 16 O 1.21568 * 120.00533 * 176.82541 * 15 14 13 17 17 C 1.47721 * 119.99825 * 356.82481 * 15 14 13 18 18 C 1.41494 * 126.51551 * 186.53424 * 17 15 14 19 19 C 1.35368 * 105.50242 * 179.97438 * 18 17 15 20 20 N 1.35030 * 107.22542 * 359.97438 * 19 18 17 21 21 C 1.46500 * 124.88179 * 179.97438 * 20 19 18 22 22 F 1.39895 * 109.47167 * 300.00113 * 21 20 19 23 23 F 1.39900 * 109.47095 * 60.00364 * 21 20 19 24 24 N 1.28470 * 110.23407 * 359.75251 * 20 19 18 25 25 C 1.47510 * 122.48607 * 89.28638 * 14 13 11 26 26 C 1.53574 * 111.02957 * 318.36503 * 25 14 13 27 27 C 1.51544 * 109.57497 * 320.02128 * 26 25 14 28 28 O 1.38016 * 109.47173 * 64.99233 * 11 10 9 29 29 H 0.97003 * 119.99784 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00350 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47149 * 299.72473 * 10 9 7 32 32 H 1.08997 * 109.47172 * 59.72537 * 10 9 7 33 33 H 1.08997 * 109.45471 * 292.13746 * 13 11 10 34 34 H 1.08993 * 109.45875 * 52.09848 * 13 11 10 35 35 H 1.08004 * 127.24972 * 359.97438 * 18 17 15 36 36 H 1.07994 * 126.38417 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47203 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.16756 * 78.76134 * 25 14 13 39 39 H 1.09000 * 109.16745 * 197.96646 * 25 14 13 40 40 H 1.08995 * 109.45589 * 80.05215 * 26 25 14 41 41 H 1.09000 * 109.45104 * 199.99244 * 26 25 14 42 42 H 1.09001 * 109.58844 * 211.18348 * 27 26 25 43 43 H 1.09001 * 109.59067 * 331.62083 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4711 -0.0056 11 6 5.6162 -2.1915 -0.0118 12 1 5.8619 -1.5442 -0.8537 13 6 6.3885 -3.5266 -0.1449 14 7 7.8006 -3.2532 -0.3381 15 6 8.2702 -3.1244 -1.5948 16 8 9.4369 -2.8382 -1.7815 17 6 7.3672 -3.3310 -2.7454 18 6 7.7363 -3.3586 -4.1111 19 6 6.5867 -3.5744 -4.7924 20 7 5.5941 -3.6697 -3.8818 21 6 4.1835 -3.9025 -4.2014 22 9 3.7121 -2.8657 -5.0137 23 9 4.0534 -5.1205 -4.8773 24 7 6.0654 -3.5313 -2.6947 25 6 8.7416 -3.1115 0.7890 26 6 8.1154 -2.2970 1.9306 27 6 7.3173 -1.1451 1.3540 28 8 5.9733 -1.5688 1.1670 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 -0.0004 31 1 3.8527 -3.0442 0.8845 32 1 3.8446 -3.0410 -0.8954 33 1 6.2535 -4.1161 0.7619 34 1 6.0062 -4.0836 -1.0003 35 1 8.7268 -3.2338 -4.5232 36 1 6.4828 -3.6554 -5.8643 37 1 3.6026 -3.9343 -3.2796 38 1 9.0076 -4.1014 1.1598 39 1 9.6428 -2.6063 0.4415 40 1 7.4563 -2.9387 2.5152 41 1 8.9046 -1.9063 2.5730 42 1 7.3419 -0.3018 2.0442 43 1 7.7437 -0.8484 0.3958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200589795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:43 Heat of formation + Delta-G solvation = -68.392539 kcal Electronic energy + Delta-G solvation = -32014.114365 eV Core-core repulsion = 27347.269378 eV Total energy + Delta-G solvation = -4666.844987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.48281 -48.56670 -43.87663 -41.49765 -39.73326 -36.86563 -36.39338 -34.75456 -33.90844 -33.06645 -31.94703 -30.49235 -28.32306 -27.62428 -26.60113 -24.72023 -23.86897 -22.80968 -22.56683 -22.05308 -20.54710 -19.78549 -19.66346 -19.06411 -18.60939 -18.17389 -17.93326 -17.65002 -16.99887 -16.59264 -16.52669 -16.16486 -15.79535 -15.54127 -15.33465 -15.17862 -14.88821 -14.80937 -14.80192 -14.75291 -14.45143 -14.36195 -13.95789 -13.75680 -13.49040 -13.46317 -13.18376 -12.89277 -12.80506 -12.44391 -12.17489 -11.93172 -11.81437 -11.75377 -11.58856 -11.25333 -11.00059 -10.77086 -10.60268 -10.38746 -9.70844 -9.27218 -8.01121 -5.32308 0.17636 0.60369 0.92401 1.36706 1.38516 1.46181 1.78275 2.12427 2.44468 2.48614 2.69527 2.93537 3.26157 3.32330 3.46878 3.53853 3.64172 3.78401 3.86640 3.98071 4.03638 4.12952 4.25618 4.29663 4.39056 4.47670 4.48073 4.56361 4.70288 4.76151 4.82739 4.90734 5.01942 5.09604 5.18207 5.23985 5.37732 5.46328 5.77449 6.06820 6.22846 6.50042 6.69444 6.90952 7.09171 7.86303 8.04448 9.20033 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.007962 B = 0.005456 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.035425 B = 5130.833031 C = 7774.317638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.057 4.057 3 Si 0.942 3.058 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.224 4.224 8 H 0.069 0.931 9 N -0.755 5.755 10 C 0.172 3.828 11 C 0.103 3.897 12 H 0.028 0.972 13 C 0.070 3.930 14 N -0.592 5.592 15 C 0.595 3.405 16 O -0.558 6.558 17 C -0.016 4.016 18 C -0.180 4.180 19 C 0.012 3.988 20 N -0.348 5.348 21 C 0.496 3.504 22 F -0.178 7.178 23 F -0.171 7.171 24 N -0.247 5.247 25 C 0.107 3.893 26 C -0.153 4.153 27 C 0.066 3.934 28 O -0.399 6.399 29 H 0.257 0.743 30 H 0.362 0.638 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.181 0.819 36 H 0.219 0.781 37 H 0.189 0.811 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.917 -11.094 -6.079 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.249 4.249 3 Si 0.771 3.229 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.355 4.355 8 H 0.087 0.913 9 N -0.400 5.400 10 C 0.045 3.955 11 C 0.043 3.957 12 H 0.046 0.954 13 C -0.054 4.054 14 N -0.323 5.323 15 C 0.382 3.618 16 O -0.436 6.436 17 C -0.178 4.178 18 C -0.207 4.207 19 C -0.128 4.128 20 N -0.144 5.144 21 C 0.364 3.636 22 F -0.160 7.160 23 F -0.153 7.153 24 N -0.081 5.081 25 C -0.014 4.014 26 C -0.191 4.191 27 C -0.010 4.010 28 O -0.318 6.318 29 H 0.066 0.934 30 H 0.194 0.806 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.198 0.802 36 H 0.236 0.764 37 H 0.206 0.794 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.156 -11.171 -5.348 21.978 hybrid contribution 0.726 1.323 -1.002 1.811 sum 18.881 -9.848 -6.349 22.222 Atomic orbital electron populations 1.69848 1.06740 1.26409 1.60102 1.25318 0.95921 1.00547 1.03130 0.85589 0.78666 0.80857 0.77814 1.20843 1.22186 1.18577 1.19058 0.82282 0.93681 1.40449 0.91350 1.42664 1.02599 1.03944 1.90799 1.20709 0.87284 0.87944 0.99529 1.21990 0.94488 0.93038 0.86210 0.95386 1.22959 0.78798 0.97644 1.06026 1.47852 1.09878 1.68959 1.05609 1.17255 0.85779 0.76590 0.82151 1.90753 1.17610 1.49852 1.85336 1.22168 0.90367 1.09299 0.95922 1.22058 1.00810 1.07357 0.90446 1.23543 0.86650 1.03525 0.99035 1.46979 1.09146 1.53372 1.04920 1.21503 0.78521 0.71957 0.91635 1.93159 1.87010 1.59356 1.76452 1.93150 1.94776 1.44213 1.83125 1.73646 1.11392 1.18652 1.04403 1.22076 0.91901 1.01964 0.85456 1.22411 1.01261 0.97638 0.97784 1.22361 0.81254 0.97381 0.99983 1.86349 1.29407 1.77405 1.38605 0.93442 0.80585 0.94768 0.92640 0.88220 0.85548 0.80203 0.76400 0.79412 0.89237 0.89432 0.89816 0.86704 0.88275 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.16 13.97 21.65 0.30 -61.86 16 2 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 3 Si 0.94 46.61 27.73 68.60 1.90 48.51 16 4 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.26 -12.16 6.52 99.48 0.65 -11.52 16 7 C -0.22 -12.50 10.47 84.03 0.88 -11.62 16 8 H 0.07 4.06 8.06 -2.91 -0.02 4.03 16 9 N -0.76 -35.42 5.34 -343.44 -1.83 -37.26 16 10 C 0.17 6.26 5.92 86.38 0.51 6.78 16 11 C 0.10 3.18 2.29 31.21 0.07 3.26 16 12 H 0.03 0.98 8.07 -2.38 -0.02 0.96 16 13 C 0.07 1.70 4.46 87.26 0.39 2.09 16 14 N -0.59 -14.11 2.19 -821.50 -1.80 -15.91 16 15 C 0.60 16.30 7.64 86.75 0.66 16.96 16 16 O -0.56 -17.51 16.22 -3.93 -0.06 -17.57 16 17 C -0.02 -0.39 6.80 42.46 0.29 -0.11 16 18 C -0.18 -3.72 10.81 22.41 0.24 -3.47 16 19 C 0.01 0.22 11.33 83.54 0.95 1.16 16 20 N -0.35 -7.26 3.56 -364.70 -1.30 -8.56 16 21 C 0.50 9.10 6.24 127.77 0.80 9.90 16 22 F -0.18 -3.94 17.46 44.97 0.79 -3.15 16 23 F -0.17 -2.95 17.46 44.97 0.79 -2.17 16 24 N -0.25 -6.01 7.92 -48.17 -0.38 -6.39 16 25 C 0.11 2.02 6.17 86.38 0.53 2.56 16 26 C -0.15 -2.68 5.79 30.31 0.18 -2.51 16 27 C 0.07 1.62 6.38 71.50 0.46 2.08 16 28 O -0.40 -12.76 9.38 -117.88 -1.11 -13.86 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.36 17.18 5.52 -92.71 -0.51 16.67 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 2.13 8.11 -2.39 -0.02 2.11 16 34 H 0.13 3.01 4.66 -7.43 -0.03 2.98 16 35 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.22 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.19 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.79 6.96 -2.39 -0.02 1.78 16 40 H 0.08 1.51 8.01 -2.39 -0.02 1.49 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 0.97 7.40 -2.39 -0.02 0.96 16 Total: -1.00 -74.68 361.84 4.18 -70.50 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.47 Total: 23.55 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 6.42 Total: 24.17 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -5.01 Total: -129.97 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.17 Total: -31.44 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.57 Total: -5.32 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.90 Total: 48.51 kcal Total: -74.68 4.18 -70.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200589795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.105 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds