Wall clock time and date at job start Wed Apr 1 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.46788 * 126.90778 * 2 1 4 4 C 1.39408 * 134.36772 * 359.97438 * 3 2 1 5 5 C 1.36732 * 119.71164 * 180.25880 * 4 3 2 6 6 C 1.38739 * 120.42106 * 359.48808 * 5 4 3 7 7 C 1.37850 * 120.68325 * 0.51521 * 6 5 4 8 8 C 1.38938 * 119.81700 * 359.74926 * 7 6 5 9 9 O 1.34808 * 133.49468 * 180.02562 * 8 7 6 10 10 C 1.34000 * 126.90959 * 179.97438 * 2 1 3 11 11 C 1.50699 * 124.92111 * 0.02562 * 10 2 1 12 12 H 1.09010 * 109.47145 * 14.97629 * 11 10 2 13 13 C 1.52995 * 109.47327 * 254.97467 * 11 10 2 14 14 N 1.46498 * 109.47016 * 134.97095 * 11 10 2 15 15 C 1.34780 * 119.99972 * 204.99732 * 14 11 10 16 16 O 1.21341 * 120.00135 * 0.02562 * 15 14 11 17 17 C 1.49450 * 119.99629 * 180.02562 * 15 14 11 18 18 O 1.21343 * 120.00531 * 359.97438 * 17 15 14 19 19 N 1.34784 * 119.99853 * 180.02562 * 17 15 14 20 20 C 1.46491 * 120.00160 * 179.97438 * 19 17 15 21 21 C 1.53002 * 109.47268 * 179.97438 * 20 19 17 22 22 C 1.50702 * 109.47088 * 179.97438 * 21 20 19 23 23 H 1.08000 * 120.00086 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99768 * 179.97438 * 22 21 20 25 25 N 1.31511 * 120.00215 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00129 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.46744 * 90.00220 * 26 24 22 28 28 H 1.48493 * 109.47367 * 209.99918 * 26 24 22 29 29 H 1.48500 * 109.47189 * 330.00344 * 26 24 22 30 30 H 1.09000 * 109.46734 * 90.03192 * 1 2 3 31 31 H 1.09004 * 109.47144 * 210.02653 * 1 2 3 32 32 H 1.08998 * 109.47236 * 330.02550 * 1 2 3 33 33 H 1.08002 * 120.14068 * 359.97438 * 4 3 2 34 34 H 1.08008 * 119.78744 * 179.72525 * 5 4 3 35 35 H 1.08001 * 119.66466 * 180.25805 * 6 5 4 36 36 H 1.08006 * 120.08883 * 179.72044 * 7 6 5 37 37 H 1.09001 * 109.47158 * 300.00424 * 13 11 10 38 38 H 1.08998 * 109.47401 * 59.99869 * 13 11 10 39 39 H 1.09004 * 109.47657 * 179.97438 * 13 11 10 40 40 H 0.96997 * 120.00011 * 25.00162 * 14 11 10 41 41 H 0.97005 * 119.99571 * 0.02562 * 19 17 15 42 42 H 1.09003 * 109.47432 * 299.99727 * 20 19 17 43 43 H 1.09006 * 109.47216 * 59.99648 * 20 19 17 44 44 H 1.08996 * 109.47107 * 300.00182 * 21 20 19 45 45 H 1.08997 * 109.46720 * 60.00112 * 21 20 19 46 46 H 0.97002 * 120.00749 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3885 1.1737 0.0000 4 6 2.1771 2.5517 -0.0004 5 6 3.2481 3.4017 -0.0057 6 6 4.5421 2.9013 0.0002 7 6 4.7706 1.5419 0.0007 8 6 3.6964 0.6607 0.0005 9 8 3.5992 -0.6838 0.0013 10 6 2.3118 -1.0714 0.0005 11 6 1.8419 -2.5033 0.0006 12 1 0.7853 -2.5390 -0.2654 13 6 2.0376 -3.1043 1.3939 14 7 2.6174 -3.2718 -0.9762 15 6 2.0949 -4.3865 -1.5248 16 8 0.9819 -4.7533 -1.2101 17 6 2.8864 -5.1708 -2.5208 18 8 3.9992 -4.8038 -2.8359 19 7 2.3636 -6.2852 -3.0698 20 6 3.1392 -7.0537 -4.0465 21 6 2.3225 -8.2619 -4.5093 22 6 3.1202 -9.0521 -5.5146 23 1 4.1107 -8.7255 -5.7950 24 6 2.5858 -10.1926 -6.0755 25 7 3.2820 -10.8825 -6.9523 26 14 0.8729 -10.7580 -5.5900 27 1 -0.1276 -10.1418 -6.4981 28 1 0.7915 -12.2370 -5.6945 29 1 0.5929 -10.3444 -4.1914 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3634 -0.8898 0.5143 32 1 -0.3633 0.8902 0.5134 33 1 1.1716 2.9460 -0.0013 34 1 3.0857 4.4694 -0.0105 35 1 5.3791 3.5838 0.0002 36 1 5.7820 1.1628 0.0007 37 1 3.0941 -3.0685 1.6598 38 1 1.4606 -2.5325 2.1206 39 1 1.6973 -4.1398 1.3941 40 1 3.5070 -2.9785 -1.2280 41 1 1.4736 -6.5779 -2.8187 42 1 3.3718 -6.4220 -4.9039 43 1 4.0657 -7.3967 -3.5859 44 1 2.0903 -8.8935 -3.6519 45 1 1.3959 -7.9193 -4.9698 46 1 2.9059 -11.6848 -7.3473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257327630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:24 Heat of formation + Delta-G solvation = -51.760245 kcal Electronic energy + Delta-G solvation = -28588.631707 eV Core-core repulsion = 24444.444729 eV Total energy + Delta-G solvation = -4144.186978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97039 -40.60420 -38.67051 -38.23629 -36.27352 -35.21095 -34.27959 -32.83118 -31.45140 -30.97122 -30.30152 -29.69376 -27.54516 -26.15482 -24.70392 -23.48060 -23.12784 -21.43763 -20.90515 -20.65398 -20.15422 -18.63240 -17.58466 -17.31357 -17.00131 -16.68684 -16.51848 -16.06109 -15.82419 -15.34558 -14.86997 -14.56815 -14.39648 -14.26952 -14.17480 -14.04946 -13.70739 -13.57431 -13.45183 -13.13223 -12.96043 -12.72589 -12.63482 -12.62505 -12.46171 -12.16493 -11.76357 -11.64033 -11.51659 -11.28356 -11.26112 -10.45732 -10.32803 -10.25944 -9.97243 -9.63220 -9.51628 -9.33770 -9.03210 -8.79946 -8.62280 -8.48919 -6.13072 -4.13914 0.44368 0.94878 1.45392 1.76786 2.19732 2.41978 3.25792 3.28948 3.30109 3.33865 3.35455 3.70357 3.80285 4.17756 4.36861 4.36905 4.50223 4.56225 4.61789 4.65719 4.73006 4.85479 4.98528 5.09134 5.16661 5.19941 5.22713 5.26399 5.38920 5.44764 5.56280 5.71529 5.82096 5.86627 5.87814 5.95018 6.02323 6.03732 6.08938 6.24817 6.45324 6.48584 6.76620 6.85406 7.05945 7.17143 7.48443 7.61342 7.76913 8.16959 8.40875 8.90173 9.46735 10.99634 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.001847 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.353705 B =15152.015957 C =15738.433183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.154 4.154 3 C -0.127 4.127 4 C -0.069 4.069 5 C -0.137 4.137 6 C -0.092 4.092 7 C -0.106 4.106 8 C 0.059 3.941 9 O -0.185 6.185 10 C 0.018 3.982 11 C 0.224 3.776 12 H 0.123 0.877 13 C -0.166 4.166 14 N -0.702 5.702 15 C 0.514 3.486 16 O -0.518 6.518 17 C 0.499 3.501 18 O -0.526 6.526 19 N -0.690 5.690 20 C 0.127 3.873 21 C -0.024 4.024 22 C -0.524 4.524 23 H 0.077 0.923 24 C 0.070 3.930 25 N -0.897 5.897 26 Si 0.881 3.119 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.265 1.265 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.418 0.582 41 H 0.409 0.591 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.025 0.975 45 H 0.020 0.980 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 28.990 19.353 35.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.155 4.155 6 C -0.111 4.111 7 C -0.124 4.124 8 C 0.011 3.989 9 O -0.087 6.087 10 C -0.030 4.030 11 C 0.120 3.880 12 H 0.141 0.859 13 C -0.224 4.224 14 N -0.357 5.357 15 C 0.295 3.705 16 O -0.393 6.393 17 C 0.278 3.722 18 O -0.403 6.403 19 N -0.341 5.341 20 C 0.005 3.995 21 C -0.061 4.061 22 C -0.563 4.563 23 H 0.095 0.905 24 C -0.132 4.132 25 N -0.535 5.535 26 Si 0.708 3.292 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.190 1.190 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.255 0.745 41 H 0.245 0.755 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.700 28.601 19.212 34.653 hybrid contribution -0.836 -0.284 0.115 0.891 sum -4.536 28.316 19.327 34.582 Atomic orbital electron populations 1.20263 0.88138 1.03149 1.02836 1.20865 0.96690 0.90153 1.07932 1.19785 0.92366 0.94250 1.06361 1.20281 0.99655 0.90467 0.98263 1.20796 0.92281 1.00028 1.02401 1.20965 0.97546 0.93703 0.98841 1.20006 0.96825 0.91257 1.04359 1.19605 0.95602 0.81024 1.02622 1.83933 1.27233 1.21162 1.76358 1.22001 0.80932 0.95591 1.04443 1.19630 0.96993 0.81112 0.90274 0.85898 1.22250 1.03443 1.02387 0.94312 1.45820 1.21231 1.25737 1.42929 1.20478 0.86580 0.81510 0.81935 1.90751 1.19192 1.68077 1.61291 1.19862 0.86758 0.82702 0.82845 1.90763 1.19225 1.68693 1.61578 1.46202 1.20907 1.24507 1.42474 1.21731 0.95002 0.92971 0.89766 1.19826 0.96248 0.92714 0.97351 1.20873 1.03613 1.08750 1.23041 0.90532 1.24986 0.97642 0.96114 0.94447 1.69895 1.37702 1.17272 1.28631 0.86766 0.84835 0.77950 0.79655 1.20155 1.21222 1.18956 0.90723 0.90900 0.90992 0.85518 0.85267 0.84662 0.84813 0.91401 0.90674 0.90363 0.74459 0.75540 0.91218 0.91182 0.95691 0.96139 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 9.94 36.01 0.36 -0.21 16 2 C -0.15 -1.43 6.35 -102.66 -0.65 -2.08 16 3 C -0.13 -1.23 6.38 -105.16 -0.67 -1.90 16 4 C -0.07 -0.52 10.05 -39.69 -0.40 -0.92 16 5 C -0.14 -0.87 9.98 -39.94 -0.40 -1.27 16 6 C -0.09 -0.60 10.01 -39.54 -0.40 -0.99 16 7 C -0.11 -0.87 10.07 -39.46 -0.40 -1.27 16 8 C 0.06 0.61 7.42 -38.48 -0.29 0.33 16 9 O -0.19 -2.05 10.32 3.92 0.04 -2.01 16 10 C 0.02 0.18 6.00 -35.80 -0.21 -0.03 16 11 C 0.22 2.15 2.86 -69.09 -0.20 1.95 16 12 H 0.12 1.14 6.47 -51.92 -0.34 0.80 16 13 C -0.17 -1.38 9.47 37.15 0.35 -1.03 16 14 N -0.70 -8.16 5.06 -55.37 -0.28 -8.44 16 15 C 0.51 7.18 7.85 -11.58 -0.09 7.09 16 16 O -0.52 -7.78 16.14 5.50 0.09 -7.69 16 17 C 0.50 8.19 7.89 -11.58 -0.09 8.10 16 18 O -0.53 -9.77 16.48 5.50 0.09 -9.68 16 19 N -0.69 -11.69 5.55 -60.73 -0.34 -12.03 16 20 C 0.13 2.52 5.61 -4.05 -0.02 2.50 16 21 C -0.02 -0.54 4.16 -27.88 -0.12 -0.65 16 22 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 23 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 24 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 25 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 26 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.40 7.38 -51.93 -0.38 0.02 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.42 4.87 7.85 -40.82 -0.32 4.55 16 41 H 0.41 6.35 7.94 -40.82 -0.32 6.03 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 45 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 46 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 394.84 15.07 5.95 5.95 Total: -1.00 -32.88 394.84 -8.36 -41.25 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.37 Total: 5.93 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.65 Total: -3.33 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.16 Total: -46.79 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.22 Total: -19.38 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.88 -8.36 -41.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257327630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.514 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds