Wall clock time and date at job start Wed Apr 1 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.46788 * 126.90778 * 2 1 4 4 C 1.39408 * 134.36772 * 359.97438 * 3 2 1 5 5 C 1.36732 * 119.71164 * 180.25880 * 4 3 2 6 6 C 1.38739 * 120.42106 * 359.48808 * 5 4 3 7 7 C 1.37850 * 120.68325 * 0.51521 * 6 5 4 8 8 C 1.38938 * 119.81700 * 359.74926 * 7 6 5 9 9 O 1.34808 * 133.49468 * 180.02562 * 8 7 6 10 10 C 1.34000 * 126.90959 * 179.97438 * 2 1 3 11 11 C 1.50699 * 124.92111 * 0.02562 * 10 2 1 12 12 H 1.09010 * 109.47145 * 14.97629 * 11 10 2 13 13 C 1.52995 * 109.47327 * 254.97467 * 11 10 2 14 14 N 1.46498 * 109.47016 * 134.97095 * 11 10 2 15 15 C 1.34780 * 119.99972 * 204.99732 * 14 11 10 16 16 O 1.21341 * 120.00135 * 0.02562 * 15 14 11 17 17 C 1.49450 * 119.99629 * 180.02562 * 15 14 11 18 18 O 1.21343 * 120.00531 * 359.97438 * 17 15 14 19 19 N 1.34784 * 119.99853 * 180.02562 * 17 15 14 20 20 C 1.46491 * 120.00160 * 179.97438 * 19 17 15 21 21 C 1.53002 * 109.47268 * 179.97438 * 20 19 17 22 22 C 1.50702 * 109.47088 * 179.97438 * 21 20 19 23 23 H 1.08000 * 120.00086 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99768 * 179.97438 * 22 21 20 25 25 N 1.31511 * 120.00215 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00129 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.46744 * 90.00220 * 26 24 22 28 28 H 1.48493 * 109.47367 * 209.99918 * 26 24 22 29 29 H 1.48500 * 109.47189 * 330.00344 * 26 24 22 30 30 H 1.09000 * 109.46734 * 90.03192 * 1 2 3 31 31 H 1.09004 * 109.47144 * 210.02653 * 1 2 3 32 32 H 1.08998 * 109.47236 * 330.02550 * 1 2 3 33 33 H 1.08002 * 120.14068 * 359.97438 * 4 3 2 34 34 H 1.08008 * 119.78744 * 179.72525 * 5 4 3 35 35 H 1.08001 * 119.66466 * 180.25805 * 6 5 4 36 36 H 1.08006 * 120.08883 * 179.72044 * 7 6 5 37 37 H 1.09001 * 109.47158 * 300.00424 * 13 11 10 38 38 H 1.08998 * 109.47401 * 59.99869 * 13 11 10 39 39 H 1.09004 * 109.47657 * 179.97438 * 13 11 10 40 40 H 0.96997 * 120.00011 * 25.00162 * 14 11 10 41 41 H 0.97005 * 119.99571 * 0.02562 * 19 17 15 42 42 H 1.09003 * 109.47432 * 299.99727 * 20 19 17 43 43 H 1.09006 * 109.47216 * 59.99648 * 20 19 17 44 44 H 1.08996 * 109.47107 * 300.00182 * 21 20 19 45 45 H 1.08997 * 109.46720 * 60.00112 * 21 20 19 46 46 H 0.97002 * 120.00749 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3885 1.1737 0.0000 4 6 2.1771 2.5517 -0.0004 5 6 3.2481 3.4017 -0.0057 6 6 4.5421 2.9013 0.0002 7 6 4.7706 1.5419 0.0007 8 6 3.6964 0.6607 0.0005 9 8 3.5992 -0.6838 0.0013 10 6 2.3118 -1.0714 0.0005 11 6 1.8419 -2.5033 0.0006 12 1 0.7853 -2.5390 -0.2654 13 6 2.0376 -3.1043 1.3939 14 7 2.6174 -3.2718 -0.9762 15 6 2.0949 -4.3865 -1.5248 16 8 0.9819 -4.7533 -1.2101 17 6 2.8864 -5.1708 -2.5208 18 8 3.9992 -4.8038 -2.8359 19 7 2.3636 -6.2852 -3.0698 20 6 3.1392 -7.0537 -4.0465 21 6 2.3225 -8.2619 -4.5093 22 6 3.1202 -9.0521 -5.5146 23 1 4.1107 -8.7255 -5.7950 24 6 2.5858 -10.1926 -6.0755 25 7 3.2820 -10.8825 -6.9523 26 14 0.8729 -10.7580 -5.5900 27 1 -0.1276 -10.1418 -6.4981 28 1 0.7915 -12.2370 -5.6945 29 1 0.5929 -10.3444 -4.1914 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3634 -0.8898 0.5143 32 1 -0.3633 0.8902 0.5134 33 1 1.1716 2.9460 -0.0013 34 1 3.0857 4.4694 -0.0105 35 1 5.3791 3.5838 0.0002 36 1 5.7820 1.1628 0.0007 37 1 3.0941 -3.0685 1.6598 38 1 1.4606 -2.5325 2.1206 39 1 1.6973 -4.1398 1.3941 40 1 3.5070 -2.9785 -1.2280 41 1 1.4736 -6.5779 -2.8187 42 1 3.3718 -6.4220 -4.9039 43 1 4.0657 -7.3967 -3.5859 44 1 2.0903 -8.8935 -3.6519 45 1 1.3959 -7.9193 -4.9698 46 1 2.9059 -11.6848 -7.3473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257327630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:24 Heat of formation + Delta-G solvation = -73.750741 kcal Electronic energy + Delta-G solvation = -28589.585287 eV Core-core repulsion = 24444.444729 eV Total energy + Delta-G solvation = -4145.140557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.62951 -41.80463 -39.86079 -38.89364 -37.28554 -36.66879 -35.04831 -34.76501 -32.28492 -32.12862 -31.52548 -30.29167 -28.13259 -27.71418 -25.82576 -24.48324 -23.84681 -22.71478 -22.18448 -21.56398 -21.05193 -19.82189 -19.03186 -18.36743 -17.95905 -17.72154 -17.38917 -17.15229 -16.65424 -16.57242 -16.20895 -15.89959 -15.81955 -15.15940 -15.02191 -14.92781 -14.77066 -14.59049 -14.56096 -14.08702 -13.97079 -13.65442 -13.40880 -13.35730 -13.18106 -13.09345 -13.07271 -12.89003 -12.71770 -12.37721 -12.23793 -12.20358 -11.83997 -11.78256 -11.51855 -10.90412 -10.79314 -10.77756 -10.57270 -10.27671 -9.63571 -9.10868 -8.30341 -6.37413 -0.16163 0.23343 0.35963 1.00788 1.36761 1.39789 1.41460 1.52679 1.55793 2.04461 2.36359 2.54628 2.73694 3.04823 3.11964 3.33683 3.60763 3.75540 3.91777 3.94505 4.05069 4.14206 4.25116 4.34455 4.37486 4.45714 4.49904 4.58588 4.67112 4.71206 4.71601 4.77312 4.92943 4.95849 4.98490 5.05804 5.09904 5.21938 5.28014 5.34744 5.36483 5.47266 5.49547 5.57916 5.70237 5.79298 6.12681 6.19014 6.25989 6.58877 6.70315 6.86272 7.27183 8.85899 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.001847 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.353705 B =15152.015957 C =15738.433183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.152 4.152 3 C -0.150 4.150 4 C -0.076 4.076 5 C -0.136 4.136 6 C -0.087 4.087 7 C -0.125 4.125 8 C 0.029 3.971 9 O -0.204 6.204 10 C -0.002 4.002 11 C 0.226 3.774 12 H 0.130 0.870 13 C -0.161 4.161 14 N -0.692 5.692 15 C 0.524 3.476 16 O -0.526 6.526 17 C 0.500 3.500 18 O -0.550 6.550 19 N -0.685 5.685 20 C 0.141 3.859 21 C -0.017 4.017 22 C -0.537 4.537 23 H 0.035 0.965 24 C 0.007 3.993 25 N -0.948 5.948 26 Si 0.954 3.046 27 H -0.266 1.266 28 H -0.286 1.286 29 H -0.240 1.240 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.418 0.582 41 H 0.419 0.581 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 31.145 21.175 38.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.154 4.154 6 C -0.105 4.105 7 C -0.143 4.143 8 C -0.018 4.018 9 O -0.107 6.107 10 C -0.050 4.050 11 C 0.123 3.877 12 H 0.148 0.852 13 C -0.219 4.219 14 N -0.345 5.345 15 C 0.305 3.695 16 O -0.402 6.402 17 C 0.281 3.719 18 O -0.428 6.428 19 N -0.337 5.337 20 C 0.018 3.982 21 C -0.055 4.055 22 C -0.575 4.575 23 H 0.053 0.947 24 C -0.191 4.191 25 N -0.587 5.587 26 Si 0.776 3.224 27 H -0.191 1.191 28 H -0.212 1.212 29 H -0.163 1.163 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.255 0.745 41 H 0.256 0.744 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.015 30.799 21.071 37.799 hybrid contribution 0.027 -0.776 -0.461 0.903 sum -5.988 30.023 20.610 36.905 Atomic orbital electron populations 1.20372 0.86344 1.04410 1.03334 1.21247 0.97906 0.89821 1.06459 1.20105 0.92218 0.95361 1.07386 1.20630 1.01195 0.89770 0.97824 1.21221 0.91838 1.01462 1.00866 1.21396 0.98803 0.93315 0.96939 1.20341 0.96935 0.91996 1.05042 1.20079 0.96850 0.80970 1.03885 1.83881 1.27908 1.21864 1.77022 1.22040 0.80930 0.95774 1.06227 1.19788 0.96853 0.80894 0.90195 0.85218 1.22218 1.03509 1.02181 0.93959 1.45848 1.21232 1.24876 1.42578 1.19856 0.86118 0.81917 0.81653 1.90752 1.19280 1.68511 1.61684 1.20285 0.86538 0.82351 0.82769 1.90754 1.20452 1.69235 1.62405 1.45954 1.21096 1.24580 1.42034 1.21297 0.94536 0.92286 0.90053 1.19695 0.96208 0.93148 0.96413 1.21200 1.02653 1.09533 1.24150 0.94692 1.26007 1.02585 0.96183 0.94275 1.70057 1.40193 1.18115 1.30380 0.85614 0.78765 0.77304 0.80695 1.19062 1.21178 1.16279 0.90469 0.89862 0.89558 0.83559 0.82308 0.81768 0.84027 0.91857 0.88712 0.90949 0.74527 0.74355 0.92305 0.92249 0.94458 0.94628 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.94 71.24 0.71 -0.29 16 2 C -0.15 -2.69 6.35 -18.59 -0.12 -2.80 16 3 C -0.15 -2.80 6.38 -20.21 -0.13 -2.93 16 4 C -0.08 -1.02 10.05 22.20 0.22 -0.79 16 5 C -0.14 -1.39 9.98 22.04 0.22 -1.17 16 6 C -0.09 -0.94 10.01 22.30 0.22 -0.72 16 7 C -0.12 -1.99 10.07 22.35 0.23 -1.76 16 8 C 0.03 0.61 7.42 22.99 0.17 0.78 16 9 O -0.20 -4.64 10.32 -8.90 -0.09 -4.74 16 10 C 0.00 -0.05 6.00 24.72 0.15 0.10 16 11 C 0.23 4.15 2.86 44.24 0.13 4.27 16 12 H 0.13 2.21 6.47 -2.38 -0.02 2.19 16 13 C -0.16 -2.51 9.47 71.98 0.68 -1.83 16 14 N -0.69 -15.75 5.06 -447.44 -2.27 -18.02 16 15 C 0.52 14.17 7.85 87.27 0.69 14.86 16 16 O -0.53 -14.94 16.14 -3.22 -0.05 -14.99 16 17 C 0.50 16.17 7.89 87.27 0.69 16.86 16 18 O -0.55 -20.59 16.48 -3.23 -0.05 -20.64 16 19 N -0.68 -22.53 5.55 -464.41 -2.58 -25.11 16 20 C 0.14 5.61 5.61 86.38 0.48 6.10 16 21 C -0.02 -0.75 4.16 29.85 0.12 -0.62 16 22 C -0.54 -30.27 9.66 25.60 0.25 -30.02 16 23 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 24 C 0.01 0.40 5.47 84.65 0.46 0.86 16 25 N -0.95 -58.68 13.96 21.45 0.30 -58.39 16 26 Si 0.95 42.59 27.47 68.60 1.88 44.47 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 29 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.75 7.38 -2.38 -0.02 0.73 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.42 9.81 7.85 -92.71 -0.73 9.08 16 41 H 0.42 12.20 7.94 -92.70 -0.74 11.46 16 42 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 44 H 0.04 1.57 7.20 -2.39 -0.02 1.56 16 45 H 0.04 1.48 7.57 -2.39 -0.02 1.47 16 46 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -72.60 394.84 1.82 -70.77 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.49 Total: 25.74 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.17 Total: 0.90 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -4.54 Total: -101.52 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.20 Total: -40.37 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Total: -72.60 1.82 -70.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257327630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.979 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds