Wall clock time and date at job start Wed Apr 1 2020 03:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33654 * 125.79963 * 2 1 4 4 C 1.34221 * 110.90250 * 179.73558 * 3 2 1 5 5 C 1.34171 * 109.12641 * 0.02562 * 4 3 2 6 6 C 1.36421 * 125.79902 * 179.69550 * 2 1 3 7 7 C 1.47370 * 127.19288 * 0.25983 * 6 2 1 8 8 O 1.21616 * 120.00478 * 349.94025 * 7 6 2 9 9 N 1.34778 * 120.00068 * 169.93383 * 7 6 2 10 10 C 1.48154 * 127.83532 * 359.96693 * 9 7 6 11 11 C 1.54389 * 104.61588 * 219.58548 * 10 9 7 12 12 H 1.09000 * 117.61356 * 115.21918 * 11 10 9 13 13 C 1.52995 * 118.12203 * 272.80781 * 11 10 9 14 14 C 1.53002 * 60.55770 * 91.54339 * 13 11 10 15 15 C 1.50697 * 119.53956 * 111.75966 * 14 13 11 16 16 O 1.21282 * 120.00804 * 289.30037 * 15 14 13 17 17 N 1.34779 * 119.99695 * 109.29851 * 15 14 13 18 18 C 1.47071 * 136.05902 * 359.63149 * 17 15 14 19 19 C 1.53751 * 87.88736 * 152.96268 * 18 17 15 20 20 C 1.50697 * 114.26559 * 139.79216 * 19 18 17 21 21 H 1.07999 * 120.00470 * 266.47664 * 20 19 18 22 22 C 1.37878 * 120.00008 * 86.47345 * 20 19 18 23 23 N 1.31521 * 120.00020 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00297 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46822 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47190 * 119.99936 * 24 22 20 27 27 H 1.48500 * 109.47092 * 240.00221 * 24 22 20 28 28 C 1.47070 * 136.05631 * 179.97438 * 17 15 14 29 29 C 1.48145 * 127.84018 * 179.65201 * 9 7 6 30 30 H 1.08999 * 109.47386 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47060 * 120.02029 * 1 2 3 32 32 H 1.09000 * 109.47313 * 240.02268 * 1 2 3 33 33 H 1.08003 * 125.42894 * 179.97438 * 4 3 2 34 34 H 1.08006 * 127.02000 * 180.02562 * 5 4 3 35 35 H 1.08994 * 110.40602 * 338.37267 * 10 9 7 36 36 H 1.09000 * 110.40131 * 100.80242 * 10 9 7 37 37 H 1.09002 * 117.44147 * 199.18970 * 13 11 10 38 38 H 1.08999 * 117.44690 * 343.89910 * 13 11 10 39 39 H 1.08997 * 113.46641 * 267.69659 * 18 17 15 40 40 H 1.09004 * 113.46347 * 38.13184 * 18 17 15 41 41 H 1.09005 * 114.39423 * 272.67340 * 19 18 17 42 42 H 0.96998 * 119.99650 * 179.97438 * 23 22 20 43 43 H 1.08993 * 113.47096 * 321.86506 * 28 17 15 44 44 H 1.09003 * 113.46582 * 92.24815 * 28 17 15 45 45 H 1.09001 * 110.40453 * 259.19709 * 29 9 7 46 46 H 1.08995 * 110.41109 * 21.62587 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 0.0092 6 6 2.3050 -1.1065 0.0059 7 6 1.8739 -2.5157 0.0080 8 8 0.7038 -2.7935 0.1884 9 7 2.7765 -3.4968 -0.1900 10 6 4.2327 -3.3581 -0.4255 11 6 4.5569 -4.4207 -1.4975 12 1 4.9010 -4.0687 -2.4701 13 6 4.8878 -5.8394 -1.0298 14 6 3.4394 -5.4760 -1.3631 15 6 2.7780 -6.0907 -2.5697 16 8 3.1211 -5.7586 -3.6845 17 7 1.8052 -7.0097 -2.4098 18 6 1.1373 -7.6576 -1.2709 19 6 -0.0944 -7.8435 -2.1722 20 6 -0.7862 -9.1724 -2.0094 21 1 -0.5300 -9.9975 -2.6574 22 6 -1.7461 -9.3349 -1.0331 23 7 -2.0585 -8.3299 -0.2442 24 14 -2.6031 -10.9824 -0.8308 25 1 -2.0759 -11.9411 -1.8347 26 1 -2.3511 -11.5069 0.5355 27 1 -4.0640 -10.8085 -1.0326 28 6 0.9486 -7.8104 -3.2976 29 6 2.5388 -4.9589 -0.2153 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5142 -0.8899 32 1 -0.3634 -0.5135 0.8902 33 1 4.4172 1.4285 0.0066 34 1 4.5928 -1.1840 0.0144 35 1 4.4641 -2.3600 -0.7974 36 1 4.7868 -3.5612 0.4908 37 1 5.4164 -6.4881 -1.7283 38 1 5.1424 -5.9753 0.0213 39 1 1.6022 -8.5971 -0.9722 40 1 0.9643 -6.9861 -0.4299 41 1 -0.7818 -6.9975 -2.1752 42 1 -2.7341 -8.4442 0.4423 43 1 0.6148 -7.2692 -4.1828 44 1 1.3643 -8.7898 -3.5343 45 1 2.8326 -5.4081 0.7333 46 1 1.4910 -5.1700 -0.4285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269428533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:59 Heat of formation + Delta-G solvation = 38.849642 kcal Electronic energy + Delta-G solvation = -30270.799908 eV Core-core repulsion = 26130.542070 eV Total energy + Delta-G solvation = -4140.257838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.80087 -40.76448 -39.14998 -38.15839 -36.75474 -33.91089 -33.02696 -32.67684 -32.03296 -29.78561 -28.40060 -27.59568 -26.09137 -25.36588 -24.94739 -23.12049 -22.47876 -21.54567 -20.98682 -19.79434 -19.09397 -18.21110 -17.37175 -16.89449 -16.61883 -16.46656 -16.12053 -15.64616 -15.56851 -15.16329 -14.77989 -14.52785 -14.38004 -13.92028 -13.68776 -13.34739 -13.25779 -13.13319 -13.08833 -12.92751 -12.47120 -12.34212 -12.04484 -11.98699 -11.76676 -11.57106 -11.48446 -11.31420 -10.97465 -10.80174 -10.55256 -10.36943 -10.27365 -10.00572 -9.80055 -9.59886 -9.21149 -9.02909 -8.88426 -8.63988 -8.56514 -7.88826 -6.15325 -4.21846 1.22199 1.81357 2.55354 2.82629 2.90359 3.24247 3.26891 3.33041 3.35543 3.38183 3.62429 4.26987 4.33835 4.35311 4.40286 4.57073 4.65133 4.74782 4.85004 4.96914 5.03661 5.13670 5.19615 5.27768 5.35884 5.43546 5.44318 5.52745 5.60339 5.65928 5.77809 5.90339 5.95570 5.99562 6.02330 6.07612 6.13874 6.17780 6.25407 6.44204 6.57086 6.66493 6.79728 6.82217 7.49770 7.57741 7.81715 8.17318 8.19325 8.47371 8.72279 8.82442 9.45013 10.94024 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.003021 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.979567 B = 9266.769679 C =10731.508444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.080 3.920 3 O -0.176 6.176 4 C -0.040 4.040 5 C -0.199 4.199 6 C -0.240 4.240 7 C 0.608 3.392 8 O -0.528 6.528 9 N -0.615 5.615 10 C 0.113 3.887 11 C -0.147 4.147 12 H 0.130 0.870 13 C -0.107 4.107 14 C -0.174 4.174 15 C 0.577 3.423 16 O -0.564 6.564 17 N -0.635 5.635 18 C 0.096 3.904 19 C 0.036 3.964 20 C -0.518 4.518 21 H 0.064 0.936 22 C 0.069 3.931 23 N -0.882 5.882 24 Si 0.895 3.105 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 C 0.100 3.900 29 C 0.144 3.856 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.208 0.792 34 H 0.168 0.832 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.264 0.736 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.420 15.278 4.138 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.027 3.973 3 O -0.072 6.072 4 C -0.106 4.106 5 C -0.218 4.218 6 C -0.244 4.244 7 C 0.399 3.601 8 O -0.406 6.406 9 N -0.349 5.349 10 C -0.009 4.009 11 C -0.167 4.167 12 H 0.148 0.852 13 C -0.145 4.145 14 C -0.178 4.178 15 C 0.366 3.634 16 O -0.444 6.444 17 N -0.367 5.367 18 C -0.026 4.026 19 C 0.017 3.983 20 C -0.556 4.556 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.518 5.518 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.021 4.021 29 C 0.022 3.978 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.224 0.776 34 H 0.185 0.815 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.784 15.906 3.809 21.390 hybrid contribution -0.025 -1.101 0.182 1.116 sum 13.759 14.805 3.991 20.602 Atomic orbital electron populations 1.20521 0.83503 1.03607 1.05629 1.22834 0.94183 0.82972 0.97315 1.83778 1.17178 1.34919 1.71345 1.23887 0.83588 0.96377 1.06764 1.23318 0.97035 0.94526 1.06928 1.21042 0.93392 0.93479 1.16495 1.16768 0.84161 0.82875 0.76286 1.90857 1.16567 1.83346 1.49798 1.48923 1.08157 1.06330 1.71483 1.22399 0.81253 0.99811 0.97484 1.23798 1.01951 0.89556 1.01395 0.85175 1.23070 0.92680 0.95904 1.02817 1.22719 0.91000 1.05696 0.98388 1.18481 0.77863 0.79136 0.87941 1.90637 1.64094 1.63921 1.25765 1.49895 1.34687 1.37754 1.14394 1.23763 0.93086 0.94889 0.90860 1.20387 0.90348 0.98980 0.88633 1.20917 1.21239 0.96018 1.17439 0.91795 1.25042 0.96134 0.96799 0.95560 1.69976 1.31707 1.30619 1.19512 0.86495 0.79465 0.83776 0.78038 1.19596 1.20900 1.20883 1.23374 0.89633 0.92981 0.96151 1.21857 1.01268 0.78832 0.95866 0.90491 0.88548 0.88173 0.77573 0.81525 0.88127 0.90300 0.87286 0.87664 0.90649 0.91936 0.91301 0.92633 0.92486 0.90753 0.89906 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.22 36.01 0.33 -0.48 16 2 C 0.08 0.97 7.37 -34.96 -0.26 0.71 16 3 O -0.18 -1.86 10.52 7.63 0.08 -1.78 16 4 C -0.04 -0.33 12.03 29.30 0.35 0.02 16 5 C -0.20 -1.91 9.39 -37.46 -0.35 -2.26 16 6 C -0.24 -3.18 6.22 -103.28 -0.64 -3.82 16 7 C 0.61 9.94 7.90 -12.54 -0.10 9.84 16 8 O -0.53 -10.46 15.94 5.26 0.08 -10.37 16 9 N -0.62 -9.02 3.31 -170.34 -0.56 -9.58 16 10 C 0.11 1.18 5.85 -2.40 -0.01 1.17 16 11 C -0.15 -1.78 6.78 -89.22 -0.60 -2.39 16 12 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 13 C -0.11 -1.20 9.86 -26.73 -0.26 -1.47 16 14 C -0.17 -2.69 2.70 -154.05 -0.42 -3.10 16 15 C 0.58 11.59 7.69 -10.99 -0.08 11.51 16 16 O -0.56 -12.87 17.59 5.56 0.10 -12.77 16 17 N -0.64 -13.20 3.64 -185.05 -0.67 -13.87 16 18 C 0.10 2.04 7.52 -8.36 -0.06 1.98 16 19 C 0.04 0.85 3.79 -91.14 -0.35 0.51 16 20 C -0.52 -13.26 8.83 -34.44 -0.30 -13.57 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.88 -24.38 13.26 55.43 0.74 -23.65 16 24 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.10 2.14 8.17 -8.51 -0.07 2.07 16 29 C 0.14 2.26 5.87 -2.20 -0.01 2.25 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 1.11 7.96 -51.93 -0.41 0.70 16 33 H 0.21 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.17 1.17 5.28 -52.48 -0.28 0.90 16 35 H 0.10 0.90 4.36 -51.93 -0.23 0.67 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.55 8.10 -51.93 -0.42 1.12 16 40 H 0.06 1.33 6.10 -51.93 -0.32 1.01 16 41 H 0.07 1.83 8.11 -51.93 -0.42 1.41 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.10 1.97 6.02 -51.93 -0.31 1.66 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -33.61 383.12 -8.59 -42.20 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.16 Total: 4.20 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.94 Total: 4.67 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.50 Total: -47.10 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: 0.26 Total: -24.92 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.61 -8.59 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269428533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.049 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds