Wall clock time and date at job start Wed Apr 1 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33654 * 125.79963 * 2 1 4 4 C 1.34221 * 110.90250 * 179.73558 * 3 2 1 5 5 C 1.34171 * 109.12641 * 0.02562 * 4 3 2 6 6 C 1.36421 * 125.79902 * 179.69550 * 2 1 3 7 7 C 1.47370 * 127.19288 * 0.25983 * 6 2 1 8 8 O 1.21616 * 120.00478 * 349.94025 * 7 6 2 9 9 N 1.34778 * 120.00068 * 169.93383 * 7 6 2 10 10 C 1.48154 * 127.83532 * 359.96693 * 9 7 6 11 11 C 1.54389 * 104.61588 * 219.58548 * 10 9 7 12 12 H 1.09000 * 117.61356 * 115.21918 * 11 10 9 13 13 C 1.52995 * 118.12203 * 272.80781 * 11 10 9 14 14 C 1.53002 * 60.55770 * 91.54339 * 13 11 10 15 15 C 1.50697 * 119.53956 * 111.75966 * 14 13 11 16 16 O 1.21282 * 120.00804 * 289.30037 * 15 14 13 17 17 N 1.34779 * 119.99695 * 109.29851 * 15 14 13 18 18 C 1.47071 * 136.05902 * 359.63149 * 17 15 14 19 19 C 1.53751 * 87.88736 * 152.96268 * 18 17 15 20 20 C 1.50697 * 114.26559 * 139.79216 * 19 18 17 21 21 H 1.07999 * 120.00470 * 266.47664 * 20 19 18 22 22 C 1.37878 * 120.00008 * 86.47345 * 20 19 18 23 23 N 1.31521 * 120.00020 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00297 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46822 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47190 * 119.99936 * 24 22 20 27 27 H 1.48500 * 109.47092 * 240.00221 * 24 22 20 28 28 C 1.47070 * 136.05631 * 179.97438 * 17 15 14 29 29 C 1.48145 * 127.84018 * 179.65201 * 9 7 6 30 30 H 1.08999 * 109.47386 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47060 * 120.02029 * 1 2 3 32 32 H 1.09000 * 109.47313 * 240.02268 * 1 2 3 33 33 H 1.08003 * 125.42894 * 179.97438 * 4 3 2 34 34 H 1.08006 * 127.02000 * 180.02562 * 5 4 3 35 35 H 1.08994 * 110.40602 * 338.37267 * 10 9 7 36 36 H 1.09000 * 110.40131 * 100.80242 * 10 9 7 37 37 H 1.09002 * 117.44147 * 199.18970 * 13 11 10 38 38 H 1.08999 * 117.44690 * 343.89910 * 13 11 10 39 39 H 1.08997 * 113.46641 * 267.69659 * 18 17 15 40 40 H 1.09004 * 113.46347 * 38.13184 * 18 17 15 41 41 H 1.09005 * 114.39423 * 272.67340 * 19 18 17 42 42 H 0.96998 * 119.99650 * 179.97438 * 23 22 20 43 43 H 1.08993 * 113.47096 * 321.86506 * 28 17 15 44 44 H 1.09003 * 113.46582 * 92.24815 * 28 17 15 45 45 H 1.09001 * 110.40453 * 259.19709 * 29 9 7 46 46 H 1.08995 * 110.41109 * 21.62587 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 0.0092 6 6 2.3050 -1.1065 0.0059 7 6 1.8739 -2.5157 0.0080 8 8 0.7038 -2.7935 0.1884 9 7 2.7765 -3.4968 -0.1900 10 6 4.2327 -3.3581 -0.4255 11 6 4.5569 -4.4207 -1.4975 12 1 4.9010 -4.0687 -2.4701 13 6 4.8878 -5.8394 -1.0298 14 6 3.4394 -5.4760 -1.3631 15 6 2.7780 -6.0907 -2.5697 16 8 3.1211 -5.7586 -3.6845 17 7 1.8052 -7.0097 -2.4098 18 6 1.1373 -7.6576 -1.2709 19 6 -0.0944 -7.8435 -2.1722 20 6 -0.7862 -9.1724 -2.0094 21 1 -0.5300 -9.9975 -2.6574 22 6 -1.7461 -9.3349 -1.0331 23 7 -2.0585 -8.3299 -0.2442 24 14 -2.6031 -10.9824 -0.8308 25 1 -2.0759 -11.9411 -1.8347 26 1 -2.3511 -11.5069 0.5355 27 1 -4.0640 -10.8085 -1.0326 28 6 0.9486 -7.8104 -3.2976 29 6 2.5388 -4.9589 -0.2153 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5142 -0.8899 32 1 -0.3634 -0.5135 0.8902 33 1 4.4172 1.4285 0.0066 34 1 4.5928 -1.1840 0.0144 35 1 4.4641 -2.3600 -0.7974 36 1 4.7868 -3.5612 0.4908 37 1 5.4164 -6.4881 -1.7283 38 1 5.1424 -5.9753 0.0213 39 1 1.6022 -8.5971 -0.9722 40 1 0.9643 -6.9861 -0.4299 41 1 -0.7818 -6.9975 -2.1752 42 1 -2.7341 -8.4442 0.4423 43 1 0.6148 -7.2692 -4.1828 44 1 1.3643 -8.7898 -3.5343 45 1 2.8326 -5.4081 0.7333 46 1 1.4910 -5.1700 -0.4285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269428533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:58 Heat of formation + Delta-G solvation = 17.091276 kcal Electronic energy + Delta-G solvation = -30271.743422 eV Core-core repulsion = 26130.542070 eV Total energy + Delta-G solvation = -4141.201352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.60304 -42.00533 -40.67750 -39.52425 -38.37252 -35.01202 -34.67705 -33.92908 -32.84010 -31.38622 -29.70398 -28.54749 -27.24182 -27.05164 -26.66672 -24.30444 -23.64098 -22.43640 -22.13815 -21.37608 -20.06756 -19.57570 -18.81106 -18.43355 -17.82898 -17.59316 -17.34332 -16.85546 -16.68731 -16.53762 -16.44720 -16.11640 -15.57602 -15.16507 -14.74139 -14.63620 -14.31726 -14.23656 -14.13223 -14.10268 -13.92743 -13.83689 -13.33501 -13.23673 -13.07485 -12.96177 -12.79209 -12.75841 -12.58017 -12.48090 -12.20680 -11.72291 -11.51440 -11.28807 -11.09607 -10.97073 -10.85868 -10.73290 -10.54456 -9.97984 -9.63190 -9.52560 -8.17379 -6.30454 0.25301 1.09992 1.40279 1.45272 1.48145 1.59464 1.63243 1.85873 1.97836 2.19055 2.39456 2.45684 3.11871 3.28144 3.32489 3.43035 3.57679 3.63674 3.77628 3.85969 3.98505 4.16814 4.24190 4.31388 4.34176 4.40122 4.45987 4.52787 4.54300 4.59811 4.61342 4.64161 4.68321 4.72372 4.78701 4.82007 4.87500 4.96916 4.99828 5.06874 5.13032 5.14104 5.36594 5.55314 5.78144 6.00303 6.19262 6.39353 6.78977 6.82014 6.98577 7.07458 7.40144 8.92605 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.003021 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.979567 B = 9266.769679 C =10731.508444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 O -0.178 6.178 4 C -0.023 4.023 5 C -0.207 4.207 6 C -0.266 4.266 7 C 0.596 3.404 8 O -0.584 6.584 9 N -0.618 5.618 10 C 0.113 3.887 11 C -0.130 4.130 12 H 0.126 0.874 13 C -0.072 4.072 14 C -0.211 4.211 15 C 0.570 3.430 16 O -0.597 6.597 17 N -0.639 5.639 18 C 0.117 3.883 19 C 0.022 3.978 20 C -0.526 4.526 21 H 0.071 0.929 22 C 0.018 3.982 23 N -0.920 5.920 24 Si 0.963 3.037 25 H -0.261 1.261 26 H -0.278 1.278 27 H -0.285 1.285 28 C 0.106 3.894 29 C 0.149 3.851 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.257 0.743 34 H 0.195 0.805 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.079 15.778 5.076 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.013 3.987 3 O -0.074 6.074 4 C -0.087 4.087 5 C -0.225 4.225 6 C -0.271 4.271 7 C 0.389 3.611 8 O -0.465 6.465 9 N -0.351 5.351 10 C -0.007 4.007 11 C -0.149 4.149 12 H 0.144 0.856 13 C -0.109 4.109 14 C -0.215 4.215 15 C 0.362 3.638 16 O -0.480 6.480 17 N -0.370 5.370 18 C -0.006 4.006 19 C 0.002 3.998 20 C -0.564 4.564 21 H 0.089 0.911 22 C -0.182 4.182 23 N -0.558 5.558 24 Si 0.788 3.212 25 H -0.184 1.184 26 H -0.204 1.204 27 H -0.212 1.212 28 C -0.016 4.016 29 C 0.026 3.974 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.272 0.728 34 H 0.212 0.788 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.124 0.876 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.502 16.403 4.734 24.450 hybrid contribution -1.127 -1.172 -0.199 1.638 sum 16.375 15.231 4.536 22.819 Atomic orbital electron populations 1.20461 0.83557 1.04901 1.04216 1.22948 0.94691 0.83407 0.97627 1.83803 1.18310 1.34203 1.71079 1.24868 0.83344 0.96866 1.03662 1.23577 0.95976 0.95307 1.07666 1.21079 0.96011 0.91852 1.18143 1.17365 0.83733 0.84420 0.75575 1.90816 1.18905 1.84356 1.52466 1.49055 1.09958 1.05528 1.70554 1.22755 0.78738 1.00395 0.98797 1.23989 0.98921 0.90086 1.01913 0.85579 1.23297 0.87775 0.94741 1.05082 1.22571 0.92625 1.09380 0.96940 1.19320 0.77185 0.78152 0.89190 1.90603 1.65114 1.64714 1.27579 1.49900 1.35227 1.38243 1.13669 1.23439 0.91671 0.95212 0.90231 1.20240 0.90952 0.97129 0.91452 1.21214 1.21406 0.96521 1.17264 0.91124 1.25847 0.96902 1.00164 0.95278 1.70115 1.32543 1.32783 1.20343 0.85434 0.77902 0.79640 0.78243 1.18446 1.20378 1.21159 1.23251 0.89175 0.93988 0.95205 1.21711 0.98618 0.80064 0.97022 0.87729 0.90254 0.89400 0.72760 0.78803 0.86184 0.86392 0.86848 0.83985 0.89333 0.92658 0.95434 0.92715 0.93101 0.89005 0.87562 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 9.22 71.24 0.66 -1.05 16 2 C 0.07 1.62 7.37 25.26 0.19 1.81 16 3 O -0.18 -3.39 10.52 4.40 0.05 -3.35 16 4 C -0.02 -0.28 12.03 66.89 0.80 0.52 16 5 C -0.21 -3.31 9.39 23.65 0.22 -3.08 16 6 C -0.27 -6.97 6.22 -18.99 -0.12 -7.09 16 7 C 0.60 20.23 7.90 86.65 0.68 20.91 16 8 O -0.58 -25.16 15.94 -4.08 -0.07 -25.22 16 9 N -0.62 -17.87 3.31 -811.08 -2.69 -20.55 16 10 C 0.11 1.99 5.85 86.53 0.51 2.49 16 11 C -0.13 -2.75 6.78 -9.89 -0.07 -2.82 16 12 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 13 C -0.07 -1.34 9.86 30.59 0.30 -1.04 16 14 C -0.21 -6.32 2.70 -51.88 -0.14 -6.46 16 15 C 0.57 23.27 7.69 87.66 0.67 23.95 16 16 O -0.60 -27.70 17.59 -3.03 -0.05 -27.75 16 17 N -0.64 -27.37 3.64 -857.77 -3.12 -30.49 16 18 C 0.12 5.12 7.52 83.27 0.63 5.75 16 19 C 0.02 1.08 3.79 -11.13 -0.04 1.04 16 20 C -0.53 -27.50 8.83 25.60 0.23 -27.28 16 21 H 0.07 3.53 7.81 -2.91 -0.02 3.50 16 22 C 0.02 0.97 5.46 84.65 0.46 1.44 16 23 N -0.92 -52.81 13.26 21.45 0.28 -52.53 16 24 Si 0.96 41.82 29.54 68.60 2.03 43.85 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 28 C 0.11 4.67 8.17 83.18 0.68 5.35 16 29 C 0.15 4.71 5.87 86.67 0.51 5.22 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.09 2.18 7.96 -2.39 -0.02 2.16 16 33 H 0.26 0.40 8.06 -2.91 -0.02 0.38 16 34 H 0.20 1.80 5.28 -2.91 -0.02 1.79 16 35 H 0.12 1.65 4.36 -2.39 -0.01 1.64 16 36 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 3.64 8.10 -2.39 -0.02 3.62 16 40 H 0.06 2.50 6.10 -2.38 -0.01 2.48 16 41 H 0.03 1.59 8.11 -2.38 -0.02 1.57 16 42 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.09 3.71 8.10 -2.39 -0.02 3.69 16 45 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.05 2.16 6.02 -2.39 -0.01 2.15 16 Total: -1.00 -79.78 383.12 3.62 -76.16 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.02 Total: 20.21 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 6.17 Total: 19.67 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -5.52 Total: -103.57 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -0.07 Total: -56.32 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -79.78 3.62 -76.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269428533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.255 kcal (2) G-P(sol) polarization free energy of solvation -79.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds