Wall clock time and date at job start Wed Apr 1 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33657 * 125.80264 * 2 1 4 4 C 1.34214 * 110.90685 * 180.26698 * 3 2 1 5 5 C 1.34177 * 109.12647 * 359.76005 * 4 3 2 6 6 C 1.36416 * 125.80146 * 179.85436 * 2 1 3 7 7 C 1.47375 * 127.19147 * 0.02562 * 6 2 1 8 8 O 1.21616 * 120.00208 * 359.71260 * 7 6 2 9 9 N 1.34780 * 120.00192 * 179.70393 * 7 6 2 10 10 C 1.46500 * 120.00390 * 180.02562 * 9 7 6 11 11 C 1.54412 * 129.01250 * 180.02562 * 10 9 7 12 12 C 1.54419 * 78.89086 * 180.64334 * 11 10 9 13 13 C 1.50703 * 129.01419 * 180.64405 * 12 11 10 14 14 O 1.21281 * 119.99538 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99988 * 180.02562 * 13 12 11 16 16 C 1.47584 * 134.49063 * 180.02562 * 15 13 12 17 17 C 1.53947 * 86.11565 * 204.63541 * 16 15 13 18 18 C 1.50699 * 113.73968 * 222.04272 * 17 16 15 19 19 H 1.07998 * 120.00165 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99722 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00043 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00162 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46863 * 89.99320 * 22 20 18 24 24 H 1.48496 * 109.47186 * 209.99414 * 22 20 18 25 25 H 1.48506 * 109.46767 * 329.99535 * 22 20 18 26 26 C 1.47577 * 134.49641 * 359.97438 * 15 13 12 27 27 C 1.54891 * 84.49409 * 43.15382 * 12 11 10 28 28 C 1.54885 * 84.49103 * 318.13307 * 12 11 10 29 29 H 1.09001 * 109.47020 * 270.14181 * 1 2 3 30 30 H 1.08991 * 109.47141 * 30.14436 * 1 2 3 31 31 H 1.08997 * 109.46943 * 150.14364 * 1 2 3 32 32 H 1.08000 * 125.43652 * 179.75684 * 4 3 2 33 33 H 1.07996 * 127.02023 * 180.02562 * 5 4 3 34 34 H 0.97004 * 119.99616 * 0.02562 * 9 7 6 35 35 H 1.08992 * 114.93459 * 68.15798 * 11 10 9 36 36 H 1.08998 * 114.98218 * 293.12337 * 11 10 9 37 37 H 1.09001 * 113.76908 * 90.33461 * 16 15 13 38 38 H 1.08997 * 113.76763 * 318.93723 * 16 15 13 39 39 H 1.08997 * 113.73914 * 90.73986 * 17 16 15 40 40 H 0.97000 * 120.00154 * 180.02562 * 21 20 18 41 41 H 1.08995 * 113.76947 * 41.05826 * 26 15 13 42 42 H 1.09001 * 113.87193 * 269.67722 * 26 15 13 43 43 H 1.09001 * 114.98080 * 69.39259 * 27 12 11 44 44 H 1.09003 * 114.97457 * 204.56822 * 27 12 11 45 45 H 1.09008 * 114.97367 * 155.43371 * 28 12 11 46 46 H 1.08998 * 114.98354 * 290.60293 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7390 -0.0058 5 6 3.6850 -0.5991 -0.0046 6 6 2.3050 -1.1064 0.0028 7 6 1.8740 -2.5157 0.0059 8 8 0.6890 -2.7892 0.0113 9 7 2.7930 -3.5016 0.0024 10 6 2.3646 -4.9025 0.0049 11 6 3.2276 -6.1829 0.0024 12 6 1.8049 -6.7831 -0.0089 13 6 1.3858 -8.2307 -0.0062 14 8 2.2261 -9.1051 0.0057 15 7 0.0774 -8.5534 -0.0181 16 6 -0.6746 -9.8233 -0.0193 17 6 -1.8160 -9.0255 -0.6756 18 6 -3.1807 -9.3580 -0.1295 19 1 -3.2846 -10.0971 0.6511 20 6 -4.2964 -8.7179 -0.6258 21 7 -5.4873 -9.0076 -0.1490 22 14 -4.1166 -7.4390 -1.9755 23 1 -4.2128 -8.1015 -3.3011 24 1 -5.1975 -6.4288 -1.8475 25 1 -2.7966 -6.7702 -1.8510 26 6 -1.1788 -7.7791 -0.0343 27 6 1.5104 -5.6830 -1.0588 28 6 1.4900 -5.6733 1.0247 29 1 -0.3633 0.0025 1.0277 30 1 -0.3633 0.8886 -0.5160 31 1 -0.3633 -0.8912 -0.5116 32 1 4.4173 1.4284 -0.0108 33 1 4.5928 -1.1840 -0.0078 34 1 3.7382 -3.2834 -0.0017 35 1 3.7929 -6.3579 0.9177 36 1 3.8032 -6.3483 -0.9084 37 1 -0.9139 -10.1931 0.9778 38 1 -0.2445 -10.5879 -0.6661 39 1 -1.7813 -9.0255 -1.7650 40 1 -6.2724 -8.5575 -0.4983 41 1 -1.1515 -6.9112 -0.6930 42 1 -1.5674 -7.5481 0.9575 43 1 2.0007 -5.8231 -2.0221 44 1 0.4638 -5.3883 -1.1354 45 1 0.4420 -5.3780 1.0780 46 1 1.9611 -5.8043 1.9988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269428538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:04 Heat of formation + Delta-G solvation = 59.624486 kcal Electronic energy + Delta-G solvation = -29648.824582 eV Core-core repulsion = 25509.467609 eV Total energy + Delta-G solvation = -4139.356973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.57242 -43.22391 -40.81523 -40.00591 -38.57098 -35.07818 -34.66305 -33.86036 -32.73837 -31.46969 -28.23849 -27.78489 -27.03150 -26.92635 -26.72157 -25.68383 -24.26204 -22.51978 -21.49730 -20.93648 -20.20528 -19.36949 -19.11171 -18.93412 -18.11763 -17.37430 -17.34687 -16.86476 -16.70929 -16.03616 -15.92619 -15.82221 -15.46254 -15.28514 -15.22057 -14.91137 -14.71401 -14.46935 -14.14188 -13.87056 -13.79342 -13.64961 -13.55026 -13.39912 -12.93806 -12.77071 -12.68655 -12.59530 -12.45333 -12.28088 -11.89083 -11.65999 -11.61778 -11.53791 -11.31320 -11.10291 -10.85794 -10.83815 -10.66106 -10.17990 -9.68006 -9.54514 -8.29025 -6.35833 0.27876 1.12137 1.35475 1.39249 1.42441 1.51158 1.56901 1.86162 2.06315 2.20646 2.36652 3.03356 3.03984 3.17551 3.24187 3.29160 3.40008 3.42455 3.59950 3.80081 3.88457 4.03879 4.28687 4.34480 4.42221 4.43430 4.52091 4.55496 4.56921 4.58841 4.62636 4.71733 4.72747 4.74700 4.74939 4.77741 4.86174 4.89213 4.90765 4.98104 5.19207 5.34950 5.37495 5.45167 5.59321 6.02355 6.26590 6.45352 6.67916 6.76603 7.06721 7.13495 7.31444 8.86470 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002918 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.022020 B = 9593.678806 C =11612.134550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.070 3.930 3 O -0.183 6.183 4 C -0.031 4.031 5 C -0.194 4.194 6 C -0.269 4.269 7 C 0.589 3.411 8 O -0.563 6.563 9 N -0.655 5.655 10 C 0.115 3.885 11 C -0.061 4.061 12 C -0.168 4.168 13 C 0.590 3.410 14 O -0.582 6.582 15 N -0.633 5.633 16 C 0.120 3.880 17 C -0.012 4.012 18 C -0.513 4.513 19 H 0.044 0.956 20 C 0.023 3.977 21 N -0.942 5.942 22 Si 0.933 3.067 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.235 1.235 26 C 0.103 3.897 27 C -0.104 4.104 28 C -0.098 4.098 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.187 0.813 34 H 0.425 0.575 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.513 22.871 -0.927 32.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.016 3.984 3 O -0.079 6.079 4 C -0.096 4.096 5 C -0.213 4.213 6 C -0.274 4.274 7 C 0.379 3.621 8 O -0.443 6.443 9 N -0.306 5.306 10 C 0.026 3.974 11 C -0.099 4.099 12 C -0.172 4.172 13 C 0.380 3.620 14 O -0.464 6.464 15 N -0.366 5.366 16 C -0.001 4.001 17 C -0.032 4.032 18 C -0.551 4.551 19 H 0.062 0.938 20 C -0.176 4.176 21 N -0.581 5.581 22 Si 0.757 3.243 23 H -0.196 1.196 24 H -0.215 1.215 25 H -0.158 1.158 26 C -0.020 4.020 27 C -0.143 4.143 28 C -0.137 4.137 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.265 0.735 33 H 0.204 0.796 34 H 0.264 0.736 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 22.066 22.644 -0.921 31.630 hybrid contribution -0.272 -0.021 -0.286 0.396 sum 21.794 22.622 -1.207 31.436 Atomic orbital electron populations 1.20622 0.83491 1.05168 1.04857 1.23052 0.94732 0.83456 0.97110 1.83808 1.18304 1.34641 1.71185 1.24746 0.83313 0.97097 1.04418 1.23201 0.95956 0.95192 1.06913 1.21093 0.95454 0.92312 1.18505 1.17566 0.85058 0.84494 0.74973 1.90802 1.18070 1.84378 1.51033 1.44207 1.10352 1.01334 1.74678 1.22850 0.96816 0.81478 0.96272 1.23893 0.92967 0.88392 1.04627 1.23163 1.01836 0.90186 1.01982 1.18513 0.80392 0.88014 0.75104 1.90633 1.51222 1.51001 1.53496 1.50218 1.03847 1.11911 1.70582 1.23229 0.88345 0.87632 1.00942 1.20883 0.92818 0.92779 0.96677 1.20983 0.90046 1.23131 1.20946 0.93780 1.25806 0.94558 0.98597 0.98627 1.70029 0.99306 1.44210 1.44567 0.85968 0.79545 0.79241 0.79569 1.19584 1.21499 1.15830 1.23858 0.79465 0.97405 1.01265 1.24875 1.00706 0.91658 0.97107 1.24368 1.00666 0.91409 0.97296 0.88760 0.88433 0.89160 0.73469 0.79616 0.73584 0.88289 0.88158 0.90077 0.90440 0.91800 0.92342 0.90773 0.89941 0.89080 0.91402 0.91187 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.89 71.24 0.70 -0.73 16 2 C 0.07 1.28 7.37 25.26 0.19 1.47 16 3 O -0.18 -2.76 10.52 4.44 0.05 -2.71 16 4 C -0.03 -0.27 12.03 66.89 0.80 0.53 16 5 C -0.19 -2.04 10.60 23.65 0.25 -1.79 16 6 C -0.27 -4.99 6.31 -18.99 -0.12 -5.11 16 7 C 0.59 13.65 7.81 86.65 0.68 14.32 16 8 O -0.56 -17.39 14.77 -4.08 -0.06 -17.45 16 9 N -0.66 -11.77 5.71 -473.96 -2.71 -14.48 16 10 C 0.12 2.53 3.92 -6.34 -0.02 2.50 16 11 C -0.06 -1.25 7.78 30.61 0.24 -1.01 16 12 C -0.17 -4.84 3.11 -63.68 -0.20 -5.04 16 13 C 0.59 21.88 8.17 87.66 0.72 22.60 16 14 O -0.58 -24.63 17.82 -3.03 -0.05 -24.68 16 15 N -0.63 -24.42 3.61 -836.76 -3.02 -27.43 16 16 C 0.12 4.80 8.39 86.48 0.73 5.52 16 17 C -0.01 -0.53 2.88 -10.87 -0.03 -0.56 16 18 C -0.51 -27.31 9.32 25.60 0.24 -27.07 16 19 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 20 C 0.02 1.25 5.47 84.65 0.46 1.72 16 21 N -0.94 -56.42 13.96 21.45 0.30 -56.12 16 22 Si 0.93 41.73 27.09 68.60 1.86 43.59 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.24 -9.53 5.47 99.48 0.54 -8.99 16 26 C 0.10 4.04 7.37 86.49 0.64 4.68 16 27 C -0.10 -2.77 7.93 31.90 0.25 -2.51 16 28 C -0.10 -2.61 7.76 31.07 0.24 -2.36 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.93 6.49 -2.39 -0.02 1.91 16 32 H 0.25 -0.20 8.06 -2.91 -0.02 -0.23 16 33 H 0.19 0.67 7.74 -2.91 -0.02 0.65 16 34 H 0.42 4.39 8.00 -92.71 -0.74 3.64 16 35 H 0.10 1.77 7.94 -2.39 -0.02 1.75 16 36 H 0.10 1.78 7.91 -2.39 -0.02 1.76 16 37 H 0.08 3.24 8.09 -2.39 -0.02 3.22 16 38 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.06 2.73 7.10 -2.39 -0.02 2.72 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.07 2.79 6.47 -2.39 -0.02 2.77 16 42 H 0.08 3.32 8.09 -2.39 -0.02 3.30 16 43 H 0.09 2.15 7.91 -2.39 -0.02 2.13 16 44 H 0.07 2.10 7.45 -2.39 -0.02 2.08 16 45 H 0.07 2.15 7.97 -2.38 -0.02 2.14 16 46 H 0.09 2.10 7.93 -2.39 -0.02 2.08 16 Total: -1.00 -74.49 387.22 2.25 -72.24 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.12 Total: 19.90 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.76 Total: 7.15 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.42 Total: -98.03 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.07 Total: -44.85 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.86 Total: 43.59 kcal Total: -74.49 2.25 -72.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269428538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.864 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds