Wall clock time and date at job start Wed Apr 1 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35127 * 125.61909 * 2 1 4 4 C 1.40369 * 107.11608 * 179.70772 * 3 2 1 5 5 C 1.36539 * 106.70590 * 0.40971 * 4 3 2 6 6 C 1.46655 * 125.98497 * 179.84837 * 5 4 3 7 7 O 1.21699 * 120.00135 * 359.72301 * 6 5 4 8 8 N 1.34780 * 120.00219 * 179.71566 * 6 5 4 9 9 C 1.46500 * 120.00390 * 180.02562 * 8 6 5 10 10 C 1.54412 * 129.01250 * 180.02562 * 9 8 6 11 11 C 1.54419 * 78.89086 * 180.64334 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99800 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46673 * 90.00806 * 21 19 17 23 23 H 1.48502 * 109.47065 * 210.00473 * 21 19 17 24 24 H 1.48489 * 109.47475 * 330.00611 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 O 1.33932 * 125.61542 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47027 * 300.01513 * 1 2 3 31 31 H 1.09005 * 109.46816 * 60.01875 * 1 2 3 32 32 H 1.08006 * 126.43929 * 359.96371 * 3 2 1 33 33 H 1.07997 * 126.64265 * 180.30051 * 4 3 2 34 34 H 0.97004 * 119.99616 * 0.02562 * 8 6 5 35 35 H 1.08992 * 114.93459 * 68.15798 * 10 9 8 36 36 H 1.08998 * 114.98218 * 293.12337 * 10 9 8 37 37 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 38 38 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 39 39 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 40 40 H 0.97000 * 119.99858 * 179.97438 * 20 19 17 41 41 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 42 42 H 1.09001 * 113.87193 * 269.67722 * 25 14 12 43 43 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 44 44 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 45 45 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 46 46 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 0.0068 5 6 3.5823 -0.7117 0.0014 6 6 4.7414 -1.6102 0.0022 7 8 5.8681 -1.1500 0.0032 8 7 4.5590 -2.9456 0.0021 9 6 5.7169 -3.8431 0.0036 10 6 5.7500 -5.3869 0.0032 11 6 7.2584 -5.0569 0.0225 12 6 8.4355 -5.9980 0.0238 13 8 8.2532 -7.1969 0.0086 14 7 9.6905 -5.5073 0.0428 15 6 11.0371 -6.1112 0.0494 16 6 11.5064 -4.8026 0.7107 17 6 12.8157 -4.2863 0.1720 18 1 13.3306 -4.8286 -0.6071 19 6 13.3558 -3.1209 0.6733 20 7 12.7285 -2.4602 1.6218 21 14 14.9784 -2.4805 0.0051 22 1 14.7180 -1.5736 -1.1417 23 1 15.6939 -1.7360 1.0724 24 1 15.8131 -3.6225 -0.4465 25 6 10.2703 -4.1504 0.0646 26 6 6.8595 -3.9904 1.0726 27 6 6.8809 -3.9666 -1.0107 28 8 2.2870 -1.0888 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 1.9613 2.1260 -0.0006 33 1 4.5113 1.2702 0.0132 34 1 3.6610 -3.3124 0.0011 35 1 5.3936 -5.8539 -0.9148 36 1 5.3707 -5.8557 0.9112 37 1 11.4507 -6.2734 -0.9459 38 1 11.1235 -6.9852 0.6950 39 1 11.4727 -4.8247 1.7999 40 1 13.1087 -1.6405 1.9747 41 1 9.7443 -3.4583 0.7221 42 1 10.4595 -3.7356 -0.9256 43 1 6.5350 -4.3895 2.0336 44 1 7.5443 -3.1463 1.1543 45 1 7.5670 -3.1210 -1.0590 46 1 6.5763 -4.3434 -1.9871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269610748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:07 Heat of formation + Delta-G solvation = 79.203884 kcal Electronic energy + Delta-G solvation = -29231.226970 eV Core-core repulsion = 25092.719023 eV Total energy + Delta-G solvation = -4138.507947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.05957 -42.07551 -39.29414 -38.78642 -36.76525 -34.27752 -33.44257 -32.64204 -32.34462 -29.33790 -27.85538 -26.03488 -25.75705 -25.61208 -25.05004 -24.18617 -22.71482 -21.97220 -20.72969 -20.07017 -19.06315 -18.57834 -17.82735 -16.90807 -16.83639 -16.52389 -15.89921 -15.70009 -14.93477 -14.89549 -14.71934 -14.46089 -14.22369 -14.13016 -13.89708 -13.69199 -13.48193 -13.33076 -13.30296 -13.21415 -12.39811 -12.31644 -12.03925 -11.84823 -11.58970 -11.45198 -11.22833 -11.14758 -10.96201 -10.77266 -10.63499 -10.47084 -10.40941 -10.37572 -10.15822 -9.62724 -9.28623 -9.26973 -8.96531 -8.82587 -8.56205 -7.85552 -6.14889 -4.20672 0.71383 1.96787 2.18442 2.66621 2.89391 2.95829 3.26467 3.33983 3.36291 3.50387 4.03557 4.17914 4.34060 4.35786 4.37112 4.39425 4.55642 4.59113 4.68980 4.84201 4.91887 4.99611 5.14083 5.15986 5.30717 5.48262 5.54673 5.59854 5.60263 5.65496 5.77498 5.90214 5.99016 6.01702 6.04724 6.11811 6.21587 6.29609 6.36157 6.40162 6.50926 6.62506 6.71648 6.85390 7.17000 7.57527 7.82337 7.83520 8.19176 8.48046 8.75700 8.82705 9.46101 10.94693 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002414 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.492568 B =11596.244629 C =13454.737769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 C -0.224 4.224 4 C -0.112 4.112 5 C -0.081 4.081 6 C 0.606 3.394 7 O -0.498 6.498 8 N -0.667 5.667 9 C 0.089 3.911 10 C -0.081 4.081 11 C -0.140 4.140 12 C 0.589 3.411 13 O -0.560 6.560 14 N -0.630 5.630 15 C 0.104 3.896 16 C 0.034 3.966 17 C -0.520 4.520 18 H 0.063 0.937 19 C 0.068 3.932 20 N -0.884 5.884 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.105 3.895 26 C -0.099 4.099 27 C -0.096 4.096 28 O -0.164 6.164 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.410 0.590 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.264 0.736 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.080 5.423 -3.012 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 C -0.243 4.243 4 C -0.132 4.132 5 C -0.132 4.132 6 C 0.392 3.608 7 O -0.373 6.373 8 N -0.316 5.316 9 C 0.001 3.999 10 C -0.119 4.119 11 C -0.144 4.144 12 C 0.376 3.624 13 O -0.440 6.440 14 N -0.363 5.363 15 C -0.017 4.017 16 C 0.015 3.985 17 C -0.558 4.558 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.017 4.017 26 C -0.138 4.138 27 C -0.135 4.135 28 O -0.061 6.061 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.175 0.825 33 H 0.180 0.820 34 H 0.247 0.753 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.639 4.926 -2.896 25.293 hybrid contribution 0.316 0.648 -0.365 0.808 sum -24.322 5.574 -3.262 25.165 Atomic orbital electron populations 1.20429 0.84472 1.04521 1.04100 1.22836 0.94295 0.84071 1.02177 1.21608 0.92307 0.99947 1.10396 1.22007 0.98810 0.92886 0.99513 1.21936 0.81625 0.94587 1.15093 1.16529 0.86270 0.81051 0.76964 1.90961 1.21784 1.75645 1.48936 1.44443 1.08289 1.04272 1.74568 1.23300 0.86911 0.90789 0.98929 1.23968 0.93244 0.91729 1.02964 1.23216 0.94418 0.96313 1.00464 1.17985 0.81358 0.86511 0.76510 1.90641 1.85208 1.15392 1.52798 1.50350 1.03687 1.12572 1.69665 1.23550 0.77966 0.99600 1.00599 1.20518 0.92701 0.88350 0.96975 1.20950 1.05224 1.08329 1.21282 0.91866 1.25028 0.97383 0.96694 0.94477 1.69947 1.38936 1.16724 1.26513 0.86547 0.83507 0.79042 0.78660 1.20522 1.21160 1.19729 1.23777 0.93910 0.83404 1.00655 1.24854 0.95561 0.97323 0.96093 1.24361 0.95471 0.97243 0.96407 1.83994 1.15987 1.35067 1.71022 0.90201 0.89110 0.89118 0.82529 0.81958 0.75339 0.89930 0.89803 0.90637 0.91909 0.91649 0.92620 0.91660 0.90643 0.90311 0.88903 0.88953 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.41 36.01 0.37 0.10 16 2 C 0.02 0.14 7.31 -35.41 -0.26 -0.12 16 3 C -0.22 -1.79 10.77 -39.89 -0.43 -2.22 16 4 C -0.11 -1.16 10.62 -39.39 -0.42 -1.58 16 5 C -0.08 -0.92 7.13 -36.80 -0.26 -1.18 16 6 C 0.61 8.09 7.79 -12.86 -0.10 7.99 16 7 O -0.50 -8.43 16.79 5.19 0.09 -8.35 16 8 N -0.67 -7.63 5.71 -64.01 -0.37 -7.99 16 9 C 0.09 1.17 3.92 -147.16 -0.58 0.59 16 10 C -0.08 -1.04 7.78 -26.71 -0.21 -1.24 16 11 C -0.14 -2.28 3.11 -172.27 -0.54 -2.81 16 12 C 0.59 11.88 8.17 -10.99 -0.09 11.79 16 13 O -0.56 -12.73 17.82 5.56 0.10 -12.63 16 14 N -0.63 -13.12 3.61 -178.41 -0.64 -13.76 16 15 C 0.10 2.19 8.39 -2.97 -0.02 2.17 16 16 C 0.03 0.80 3.62 -90.83 -0.33 0.47 16 17 C -0.52 -13.32 8.77 -34.44 -0.30 -13.62 16 18 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.88 -24.38 13.27 55.43 0.74 -23.64 16 21 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 25 C 0.10 2.26 8.17 -2.96 -0.02 2.24 16 26 C -0.10 -1.51 7.93 -24.71 -0.20 -1.70 16 27 C -0.10 -1.41 7.76 -25.99 -0.20 -1.62 16 28 O -0.16 -1.58 10.40 4.99 0.05 -1.53 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.41 3.51 8.59 -40.82 -0.35 3.16 16 35 H 0.08 0.97 7.94 -51.93 -0.41 0.55 16 36 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 37 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.68 8.13 -51.93 -0.42 1.26 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.06 1.42 7.63 -51.93 -0.40 1.03 16 42 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 43 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 44 H 0.09 1.58 7.45 -51.93 -0.39 1.19 16 45 H 0.09 1.51 7.97 -51.92 -0.41 1.09 16 46 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -32.01 398.01 -9.27 -41.29 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.54 Total: 4.36 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.68 Total: 0.93 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.27 Total: -45.40 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.24 Total: -22.50 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.01 -9.27 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269610748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.490 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds