Wall clock time and date at job start Wed Apr 1 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35127 * 125.61909 * 2 1 4 4 C 1.40369 * 107.11608 * 179.70772 * 3 2 1 5 5 C 1.36539 * 106.70590 * 0.40971 * 4 3 2 6 6 C 1.46655 * 125.98497 * 179.84837 * 5 4 3 7 7 O 1.21699 * 120.00135 * 359.72301 * 6 5 4 8 8 N 1.34780 * 120.00219 * 179.71566 * 6 5 4 9 9 C 1.46500 * 120.00390 * 180.02562 * 8 6 5 10 10 C 1.54412 * 129.01250 * 180.02562 * 9 8 6 11 11 C 1.54419 * 78.89086 * 180.64334 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99800 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46673 * 90.00806 * 21 19 17 23 23 H 1.48502 * 109.47065 * 210.00473 * 21 19 17 24 24 H 1.48489 * 109.47475 * 330.00611 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 O 1.33932 * 125.61542 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47027 * 300.01513 * 1 2 3 31 31 H 1.09005 * 109.46816 * 60.01875 * 1 2 3 32 32 H 1.08006 * 126.43929 * 359.96371 * 3 2 1 33 33 H 1.07997 * 126.64265 * 180.30051 * 4 3 2 34 34 H 0.97004 * 119.99616 * 0.02562 * 8 6 5 35 35 H 1.08992 * 114.93459 * 68.15798 * 10 9 8 36 36 H 1.08998 * 114.98218 * 293.12337 * 10 9 8 37 37 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 38 38 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 39 39 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 40 40 H 0.97000 * 119.99858 * 179.97438 * 20 19 17 41 41 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 42 42 H 1.09001 * 113.87193 * 269.67722 * 25 14 12 43 43 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 44 44 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 45 45 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 46 46 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 0.0068 5 6 3.5823 -0.7117 0.0014 6 6 4.7414 -1.6102 0.0022 7 8 5.8681 -1.1500 0.0032 8 7 4.5590 -2.9456 0.0021 9 6 5.7169 -3.8431 0.0036 10 6 5.7500 -5.3869 0.0032 11 6 7.2584 -5.0569 0.0225 12 6 8.4355 -5.9980 0.0238 13 8 8.2532 -7.1969 0.0086 14 7 9.6905 -5.5073 0.0428 15 6 11.0371 -6.1112 0.0494 16 6 11.5064 -4.8026 0.7107 17 6 12.8157 -4.2863 0.1720 18 1 13.3306 -4.8286 -0.6071 19 6 13.3558 -3.1209 0.6733 20 7 12.7285 -2.4602 1.6218 21 14 14.9784 -2.4805 0.0051 22 1 14.7180 -1.5736 -1.1417 23 1 15.6939 -1.7360 1.0724 24 1 15.8131 -3.6225 -0.4465 25 6 10.2703 -4.1504 0.0646 26 6 6.8595 -3.9904 1.0726 27 6 6.8809 -3.9666 -1.0107 28 8 2.2870 -1.0888 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 1.9613 2.1260 -0.0006 33 1 4.5113 1.2702 0.0132 34 1 3.6610 -3.3124 0.0011 35 1 5.3936 -5.8539 -0.9148 36 1 5.3707 -5.8557 0.9112 37 1 11.4507 -6.2734 -0.9459 38 1 11.1235 -6.9852 0.6950 39 1 11.4727 -4.8247 1.7999 40 1 13.1087 -1.6405 1.9747 41 1 9.7443 -3.4583 0.7221 42 1 10.4595 -3.7356 -0.9256 43 1 6.5350 -4.3895 2.0336 44 1 7.5443 -3.1463 1.1543 45 1 7.5670 -3.1210 -1.0590 46 1 6.5763 -4.3434 -1.9871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269610748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:07 Heat of formation + Delta-G solvation = 59.194595 kcal Electronic energy + Delta-G solvation = -29232.094637 eV Core-core repulsion = 25092.719023 eV Total energy + Delta-G solvation = -4139.375615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.77175 -43.26289 -40.75141 -40.12077 -38.50085 -35.25075 -34.64015 -34.18768 -32.90813 -31.11702 -28.56021 -27.60088 -27.03899 -26.96087 -26.70815 -25.49076 -23.81636 -22.68047 -21.93287 -21.29757 -20.37931 -19.52735 -19.29079 -18.70665 -18.04461 -17.56873 -17.35399 -16.67774 -16.61436 -16.18802 -15.90113 -15.88419 -15.51344 -15.32489 -15.07472 -14.90479 -14.24344 -14.12500 -14.06565 -14.00952 -13.72759 -13.67429 -13.35359 -13.20862 -12.97175 -12.83583 -12.81116 -12.72154 -12.47518 -12.30933 -12.25668 -11.78288 -11.65823 -11.46700 -11.30768 -11.15039 -11.09185 -10.78028 -10.54956 -10.35769 -9.60884 -9.51532 -8.17110 -6.28658 -0.09210 1.29049 1.33046 1.37774 1.46181 1.47809 1.57559 1.74414 1.95269 1.99974 2.45053 2.98725 3.13390 3.16167 3.19027 3.22560 3.38249 3.42314 3.61923 3.87360 3.92014 4.26823 4.38915 4.40037 4.46145 4.49704 4.52851 4.56686 4.58830 4.64426 4.70992 4.71559 4.72529 4.75458 4.75786 4.82330 4.86202 4.92191 4.99092 5.05653 5.12872 5.28901 5.42973 5.57906 5.78062 5.80085 6.20798 6.28653 6.78224 6.80538 6.87567 7.09688 7.41445 8.92629 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002414 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.492568 B =11596.244629 C =13454.737769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.031 3.969 3 C -0.233 4.233 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.605 3.395 7 O -0.546 6.546 8 N -0.653 5.653 9 C 0.110 3.890 10 C -0.058 4.058 11 C -0.164 4.164 12 C 0.587 3.413 13 O -0.585 6.585 14 N -0.633 5.633 15 C 0.111 3.889 16 C 0.023 3.977 17 C -0.529 4.529 18 H 0.068 0.932 19 C 0.018 3.982 20 N -0.919 5.919 21 Si 0.959 3.041 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.264 1.264 25 C 0.122 3.878 26 C -0.105 4.105 27 C -0.096 4.096 28 O -0.167 6.167 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.183 0.817 33 H 0.157 0.843 34 H 0.427 0.573 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.828 5.544 -4.020 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.021 4.021 3 C -0.252 4.252 4 C -0.139 4.139 5 C -0.161 4.161 6 C 0.393 3.607 7 O -0.424 6.424 8 N -0.302 5.302 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.168 4.168 12 C 0.377 3.623 13 O -0.467 6.467 14 N -0.365 5.365 15 C -0.011 4.011 16 C 0.004 3.996 17 C -0.567 4.567 18 H 0.087 0.913 19 C -0.182 4.182 20 N -0.557 5.557 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.001 4.001 26 C -0.145 4.145 27 C -0.135 4.135 28 O -0.063 6.063 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.201 0.799 33 H 0.175 0.825 34 H 0.267 0.733 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -27.429 5.018 -3.913 28.157 hybrid contribution 1.072 0.646 -0.022 1.251 sum -26.357 5.663 -3.935 27.244 Atomic orbital electron populations 1.20696 0.81163 1.05707 1.05918 1.23742 0.95932 0.83296 0.99145 1.21929 0.91034 1.01544 1.10667 1.22245 1.00085 0.92816 0.98712 1.21512 0.81991 0.94374 1.18207 1.16793 0.86331 0.81552 0.75976 1.90938 1.23733 1.76509 1.51255 1.44305 1.08556 1.03575 1.73777 1.22937 0.86728 0.91580 0.96671 1.23894 0.89785 0.91028 1.04871 1.23133 0.95158 0.96860 1.01688 1.18502 0.81721 0.86779 0.75293 1.90616 1.85571 1.16629 1.53854 1.50322 1.04251 1.11886 1.70057 1.23449 0.78158 0.98446 1.01005 1.20428 0.93086 0.90599 0.95518 1.21270 1.05914 1.08339 1.21158 0.91341 1.25801 1.00610 0.97037 0.94754 1.70069 1.40540 1.17186 1.27918 0.85540 0.79616 0.78532 0.77894 1.20099 1.21267 1.18809 1.23449 0.92907 0.83580 1.00135 1.24879 0.96300 0.96112 0.97160 1.24360 0.95854 0.95873 0.97418 1.83986 1.15242 1.35912 1.71181 0.89382 0.87185 0.87120 0.79933 0.82493 0.73307 0.87822 0.88102 0.89379 0.91322 0.94511 0.92728 0.92640 0.90533 0.89150 0.91740 0.91361 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.41 71.24 0.74 0.50 16 2 C 0.03 0.39 7.31 24.97 0.18 0.58 16 3 C -0.23 -3.27 10.77 22.07 0.24 -3.03 16 4 C -0.12 -2.43 10.62 22.39 0.24 -2.19 16 5 C -0.11 -2.46 7.13 24.07 0.17 -2.29 16 6 C 0.61 16.37 7.79 86.44 0.67 17.04 16 7 O -0.55 -19.40 16.79 -4.35 -0.07 -19.48 16 8 N -0.65 -14.26 5.71 -474.65 -2.71 -16.97 16 9 C 0.11 2.79 3.92 -6.34 -0.02 2.76 16 10 C -0.06 -1.35 7.78 30.61 0.24 -1.11 16 11 C -0.16 -5.30 3.11 -63.68 -0.20 -5.50 16 12 C 0.59 23.76 8.17 87.66 0.72 24.48 16 13 O -0.58 -26.32 17.82 -3.03 -0.05 -26.38 16 14 N -0.63 -26.85 3.61 -836.76 -3.02 -29.87 16 15 C 0.11 4.72 8.39 86.48 0.73 5.44 16 16 C 0.02 1.12 3.62 -10.87 -0.04 1.08 16 17 C -0.53 -27.47 8.77 25.60 0.22 -27.25 16 18 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16 19 C 0.02 0.97 5.46 84.66 0.46 1.43 16 20 N -0.92 -52.10 13.27 21.45 0.28 -51.81 16 21 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 25 C 0.12 5.47 8.17 86.49 0.71 6.17 16 26 C -0.11 -3.26 7.93 31.90 0.25 -3.00 16 27 C -0.10 -2.83 7.76 31.07 0.24 -2.59 16 28 O -0.17 -2.92 10.40 -5.05 -0.05 -2.97 16 29 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 34 H 0.43 6.43 8.59 -92.71 -0.80 5.63 16 35 H 0.10 2.06 7.94 -2.39 -0.02 2.04 16 36 H 0.10 2.07 7.91 -2.39 -0.02 2.06 16 37 H 0.09 3.52 8.09 -2.39 -0.02 3.50 16 38 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.04 1.99 8.13 -2.39 -0.02 1.97 16 40 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.06 2.57 7.63 -2.39 -0.02 2.56 16 42 H 0.08 3.40 8.09 -2.39 -0.02 3.38 16 43 H 0.09 2.53 7.91 -2.39 -0.02 2.51 16 44 H 0.06 2.35 7.45 -2.39 -0.02 2.33 16 45 H 0.07 2.34 7.97 -2.38 -0.02 2.32 16 46 H 0.09 2.41 7.93 -2.39 -0.02 2.39 16 Total: -1.00 -71.22 398.01 2.17 -69.05 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.22 Total: 21.85 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.55 Total: 12.51 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -5.44 Total: -98.65 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -0.18 Total: -48.82 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -71.22 2.17 -69.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269610748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.240 kcal (2) G-P(sol) polarization free energy of solvation -71.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds