Wall clock time and date at job start Wed Apr 1 2020 03:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40366 * 126.64951 * 2 1 4 4 C 1.35127 * 107.12118 * 180.22316 * 3 2 1 5 5 O 1.33940 * 108.76155 * 359.77246 * 4 3 2 6 6 C 1.34907 * 109.38665 * 0.02562 * 5 4 3 7 7 C 1.46653 * 125.98826 * 179.97438 * 6 5 4 8 8 O 1.21701 * 120.00271 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99864 * 0.02562 * 7 6 5 10 10 C 1.47725 * 134.39389 * 179.97438 * 9 7 6 11 11 C 1.53287 * 85.85706 * 155.91065 * 10 9 7 12 12 C 1.52327 * 128.81588 * 243.38138 * 11 10 9 13 13 C 1.52317 * 128.82028 * 163.01806 * 11 10 9 14 14 H 1.09001 * 117.55562 * 10.46401 * 13 11 10 15 15 C 1.50699 * 117.51731 * 225.33296 * 13 11 10 16 16 O 1.21280 * 120.00081 * 0.17958 * 15 13 11 17 17 N 1.34781 * 120.00312 * 180.18337 * 15 13 11 18 18 C 1.47580 * 134.49134 * 179.97438 * 17 15 13 19 19 C 1.53952 * 86.11500 * 155.36347 * 18 17 15 20 20 C 1.50695 * 113.74060 * 137.95290 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47578 * 134.49101 * 0.02562 * 17 15 13 29 29 C 1.47721 * 134.39444 * 0.02562 * 9 7 6 30 30 H 1.08999 * 109.47579 * 270.16449 * 1 2 3 31 31 H 1.08998 * 109.47421 * 30.16225 * 1 2 3 32 32 H 1.09003 * 109.47028 * 150.15949 * 1 2 3 33 33 H 1.08000 * 126.43667 * 359.97138 * 3 2 1 34 34 H 1.07994 * 125.62138 * 179.78139 * 4 3 2 35 35 H 1.09005 * 113.80840 * 41.67079 * 10 9 7 36 36 H 1.09002 * 113.80873 * 270.14691 * 10 9 7 37 37 H 1.08995 * 117.51840 * 134.66080 * 12 11 10 38 38 H 1.09006 * 117.51689 * 349.53763 * 12 11 10 39 39 H 1.08998 * 113.77108 * 41.06531 * 18 17 15 40 40 H 1.08991 * 113.87349 * 269.67144 * 18 17 15 41 41 H 1.08997 * 113.74240 * 269.15892 * 19 18 17 42 42 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 43 43 H 1.08997 * 113.77175 * 90.33932 * 28 17 15 44 44 H 1.09004 * 113.76848 * 318.93948 * 28 17 15 45 45 H 1.09007 * 113.80772 * 89.85498 * 29 9 7 46 46 H 1.08994 * 113.81130 * 318.32557 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0050 5 8 3.6004 -0.6648 -0.0031 6 6 2.3220 -1.0956 0.0027 7 6 1.8842 -2.4952 0.0059 8 8 0.6967 -2.7614 0.0106 9 7 2.7971 -3.4868 0.0036 10 6 2.7205 -4.9621 0.0061 11 6 4.1175 -4.9247 -0.6237 12 6 4.5588 -5.4120 -1.9978 13 6 5.1462 -6.0428 -0.7320 14 1 4.8232 -7.0518 -0.4756 15 6 6.5750 -5.7102 -0.3869 16 8 6.8683 -4.5871 -0.0354 17 7 7.5270 -6.6608 -0.4690 18 6 8.9807 -6.6930 -0.2170 19 6 8.8000 -8.2032 0.0216 20 6 9.8839 -9.0489 -0.5955 21 1 10.6884 -8.5806 -1.1430 22 6 9.8485 -10.4206 -0.4610 23 7 8.8686 -10.9910 0.2054 24 14 11.1925 -11.4690 -1.2252 25 1 12.5068 -11.0859 -0.6496 26 1 11.2136 -11.2531 -2.6943 27 1 10.9260 -12.9016 -0.9388 28 6 7.5344 -8.0871 -0.8478 29 6 4.2736 -3.5322 -0.0013 30 1 -0.3634 0.0030 1.0276 31 1 -0.3634 0.8885 -0.5163 32 1 -0.3633 -0.8914 -0.5114 33 1 2.0306 2.1594 -0.0004 34 1 4.5046 1.2916 -0.0097 35 1 1.9510 -5.3638 -0.6533 36 1 2.6991 -5.3999 1.0040 37 1 5.2057 -4.7565 -2.5807 38 1 3.8487 -6.0058 -2.5736 39 1 9.2849 -6.1411 0.6723 40 1 9.5855 -6.4559 -1.0923 41 1 8.5988 -8.4622 1.0610 42 1 8.1709 -10.4466 0.6026 43 1 7.7132 -8.2589 -1.9092 44 1 6.6833 -8.6485 -0.4622 45 1 4.7169 -3.5424 0.9945 46 1 4.7341 -2.8018 -0.6665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270278568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:20 Heat of formation + Delta-G solvation = 27.774278 kcal Electronic energy + Delta-G solvation = -29158.847747 eV Core-core repulsion = 25018.109645 eV Total energy + Delta-G solvation = -4140.738102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.73806 -41.86867 -40.84721 -39.56191 -38.45383 -35.77164 -35.05751 -34.82664 -31.71849 -30.87854 -29.70669 -27.94278 -27.43445 -27.08917 -26.80533 -24.60451 -23.70139 -22.33955 -22.06779 -20.74499 -20.09623 -19.48726 -19.01349 -18.76234 -18.11305 -17.62643 -17.49768 -16.92003 -16.70423 -16.58225 -16.29336 -15.82348 -15.57083 -15.13404 -14.92648 -14.60521 -14.59726 -14.19830 -14.07772 -14.02222 -13.87866 -13.63643 -13.55240 -13.45138 -13.27140 -13.10784 -12.84710 -12.77919 -12.43946 -12.06908 -11.89946 -11.83205 -11.55228 -11.42747 -11.07089 -11.01018 -10.72865 -10.53816 -10.42936 -10.08075 -9.61923 -9.58838 -8.58682 -6.32186 -0.05740 1.32012 1.33909 1.50127 1.62828 1.67868 1.81856 1.87301 1.91619 2.00463 2.61948 2.65413 2.93586 3.19600 3.30146 3.39411 3.58019 3.75048 3.76631 3.85623 4.06059 4.11845 4.28734 4.29717 4.38095 4.43619 4.45645 4.48293 4.50400 4.54187 4.58523 4.60568 4.71171 4.71806 4.72845 4.76962 4.78568 4.82488 4.84847 5.02837 5.06108 5.15361 5.41738 5.42349 5.87168 6.03187 6.21792 6.34716 6.61197 6.80373 6.82657 7.11524 7.46981 8.81911 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029241 B = 0.001944 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.346039 B =14402.512173 C =15057.628394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.093 4.093 3 C -0.231 4.231 4 C 0.007 3.993 5 O -0.175 6.175 6 C -0.120 4.120 7 C 0.620 3.380 8 O -0.553 6.553 9 N -0.640 5.640 10 C 0.155 3.845 11 C -0.149 4.149 12 C -0.094 4.094 13 C -0.161 4.161 14 H 0.143 0.857 15 C 0.550 3.450 16 O -0.585 6.585 17 N -0.636 5.636 18 C 0.117 3.883 19 C -0.002 4.002 20 C -0.603 4.603 21 H 0.055 0.945 22 C -0.021 4.021 23 N -0.930 5.930 24 Si 1.111 2.889 25 H -0.275 1.275 26 H -0.269 1.269 27 H -0.289 1.289 28 C 0.115 3.885 29 C 0.166 3.834 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.186 0.814 34 H 0.250 0.750 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.031 0.969 42 H 0.261 0.739 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 19.470 -3.411 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.249 4.249 4 C -0.062 4.062 5 O -0.071 6.071 6 C -0.171 4.171 7 C 0.412 3.588 8 O -0.434 6.434 9 N -0.373 5.373 10 C 0.034 3.966 11 C -0.150 4.150 12 C -0.131 4.131 13 C -0.182 4.182 14 H 0.161 0.839 15 C 0.341 3.659 16 O -0.467 6.467 17 N -0.369 5.369 18 C -0.006 4.006 19 C -0.021 4.021 20 C -0.641 4.641 21 H 0.073 0.927 22 C -0.221 4.221 23 N -0.566 5.566 24 Si 0.934 3.066 25 H -0.201 1.201 26 H -0.194 1.194 27 H -0.214 1.214 28 C -0.008 4.008 29 C 0.044 3.956 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.203 0.797 34 H 0.266 0.734 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.159 0.841 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.305 18.438 -3.401 22.991 hybrid contribution -0.290 1.623 0.617 1.760 sum -13.595 20.061 -2.784 24.393 Atomic orbital electron populations 1.20431 0.87548 1.03736 1.03166 1.21055 0.98432 0.91458 0.98613 1.22097 0.91945 1.00831 1.10064 1.25343 1.01637 0.79764 0.99500 1.84139 1.27833 1.24251 1.70860 1.21666 0.82531 0.94253 1.18683 1.16304 0.84294 0.81937 0.76307 1.90808 1.16031 1.82832 1.53771 1.49872 1.08312 1.07519 1.71584 1.22812 0.93886 0.78069 1.01793 1.22519 0.95236 0.94701 1.02590 1.22987 1.01086 1.00621 0.88376 1.22069 0.89429 1.00033 1.06715 0.83897 1.19866 0.86551 0.82830 0.76658 1.90615 1.83480 1.21975 1.50619 1.50289 1.08959 1.12246 1.65403 1.23212 0.80204 0.97152 0.99984 1.20619 0.94329 0.91870 0.95290 1.22104 1.10712 0.93855 1.37424 0.92696 1.27097 1.01682 0.97890 0.95419 1.70927 1.12676 1.39494 1.33504 0.82971 0.73016 0.74307 0.76294 1.20091 1.19427 1.21449 1.23564 0.99347 0.77468 1.00377 1.22511 0.77988 0.94268 1.00843 0.90424 0.88958 0.91592 0.79655 0.73429 0.87777 0.87550 0.88169 0.84081 0.91997 0.90037 0.95041 0.92875 0.90000 0.91111 0.89497 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.81 71.23 0.70 -1.01 16 2 C -0.09 -1.98 6.20 -19.74 -0.12 -2.10 16 3 C -0.23 -3.46 10.83 22.07 0.24 -3.22 16 4 C 0.01 0.10 12.08 67.10 0.81 0.91 16 5 O -0.18 -4.02 9.15 -5.06 -0.05 -4.07 16 6 C -0.12 -3.09 7.07 24.07 0.17 -2.92 16 7 C 0.62 17.83 8.02 86.44 0.69 18.53 16 8 O -0.55 -17.96 15.46 -4.35 -0.07 -18.02 16 9 N -0.64 -16.45 3.61 -851.99 -3.08 -19.53 16 10 C 0.16 3.23 8.85 86.24 0.76 3.99 16 11 C -0.15 -3.39 3.04 -52.38 -0.16 -3.55 16 12 C -0.09 -1.90 10.24 30.42 0.31 -1.59 16 13 C -0.16 -4.06 5.94 -11.72 -0.07 -4.13 16 14 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 15 C 0.55 19.02 7.84 87.66 0.69 19.70 16 16 O -0.58 -23.07 15.86 -3.03 -0.05 -23.12 16 17 N -0.64 -23.68 3.61 -836.73 -3.02 -26.69 16 18 C 0.12 4.65 8.39 86.48 0.73 5.38 16 19 C 0.00 -0.08 3.10 -10.87 -0.03 -0.11 16 20 C -0.60 -30.10 8.77 25.60 0.22 -29.88 16 21 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 22 C -0.02 -1.08 5.46 84.66 0.46 -0.62 16 23 N -0.93 -51.30 13.65 21.45 0.29 -51.00 16 24 Si 1.11 45.69 29.90 68.60 2.05 47.75 16 25 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16 26 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 27 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 28 C 0.11 4.41 8.12 86.49 0.70 5.11 16 29 C 0.17 4.28 6.35 86.25 0.55 4.83 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.51 6.45 -2.39 -0.02 1.49 16 33 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.25 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.08 3.15 8.09 -2.39 -0.02 3.13 16 41 H 0.03 1.55 7.61 -2.39 -0.02 1.53 16 42 H 0.26 14.32 7.04 -92.70 -0.65 13.67 16 43 H 0.08 3.12 8.09 -2.39 -0.02 3.10 16 44 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 45 H 0.09 2.43 8.01 -2.38 -0.02 2.41 16 46 H 0.08 2.21 7.55 -2.39 -0.02 2.19 16 Total: -1.00 -68.59 392.70 3.85 -64.74 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.11 Total: 20.63 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.65 Total: 9.32 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -5.80 Total: -97.23 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.16 Total: -45.21 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.05 Total: 47.75 kcal Total: -68.59 3.85 -64.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270278568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.511 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds