Wall clock time and date at job start Wed Apr 1 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99867 * 2 1 4 4 H 1.48497 * 109.46747 * 90.00064 * 3 2 1 5 5 H 1.48498 * 109.47095 * 209.99940 * 3 2 1 6 6 H 1.48491 * 109.47301 * 330.00169 * 3 2 1 7 7 C 1.38814 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00101 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99638 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99335 * 174.90105 * 9 7 2 11 11 C 1.53002 * 109.54310 * 61.86819 * 10 9 7 12 12 N 1.46504 * 109.46921 * 54.82021 * 11 10 9 13 13 C 1.34778 * 119.99592 * 176.95901 * 12 11 10 14 14 O 1.21567 * 119.99976 * 0.02562 * 13 12 11 15 15 C 1.47707 * 119.99848 * 179.97438 * 13 12 11 16 16 C 1.41505 * 126.51683 * 179.71779 * 15 13 12 17 17 C 1.35362 * 105.50067 * 179.90642 * 16 15 13 18 18 N 1.35038 * 107.23274 * 0.35212 * 17 16 15 19 19 C 1.46499 * 124.88866 * 179.76491 * 18 17 16 20 20 F 1.39892 * 109.47180 * 209.97667 * 19 18 17 21 21 F 1.39901 * 109.46830 * 329.97642 * 19 18 17 22 22 N 1.28464 * 110.22573 * 359.77089 * 18 17 16 23 23 C 1.53175 * 109.54260 * 301.68794 * 10 9 7 24 24 C 1.53282 * 109.06733 * 297.03082 * 23 10 9 25 25 O 1.42904 * 109.46165 * 302.45178 * 24 23 10 26 26 C 1.42894 * 114.10044 * 61.15290 * 25 24 23 27 27 C 1.53092 * 109.41652 * 298.84522 * 26 25 24 28 28 H 0.96998 * 119.99658 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00302 * 354.89914 * 9 7 2 30 30 H 1.09001 * 109.46287 * 174.81702 * 11 10 9 31 31 H 1.09000 * 109.46754 * 294.81774 * 11 10 9 32 32 H 0.96995 * 120.00292 * 356.96722 * 12 11 10 33 33 H 1.07998 * 127.24770 * 0.02562 * 16 15 13 34 34 H 1.08004 * 126.38683 * 180.08874 * 17 16 15 35 35 H 1.09000 * 109.47066 * 89.97611 * 19 18 17 36 36 H 1.09001 * 109.52293 * 57.02087 * 23 10 9 37 37 H 1.08999 * 109.52426 * 177.20988 * 23 10 9 38 38 H 1.08992 * 109.46148 * 182.44868 * 24 23 10 39 39 H 1.09009 * 109.46120 * 62.44974 * 24 23 10 40 40 H 1.09004 * 109.48324 * 178.85971 * 26 25 24 41 41 H 1.09004 * 109.49407 * 58.83197 * 26 25 24 42 42 H 1.09000 * 109.52464 * 297.70328 * 27 26 25 43 43 H 1.09004 * 109.57630 * 177.55067 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1121 -2.4659 0.1122 11 6 3.7797 -3.3582 -1.0854 12 7 4.0526 -2.6303 -2.3272 13 6 3.8907 -3.2429 -3.5168 14 8 3.5179 -4.3992 -3.5593 15 6 4.1652 -2.5089 -4.7689 16 6 4.0473 -3.0153 -6.0849 17 6 4.3972 -1.9920 -6.8990 18 7 4.7122 -0.9426 -6.1097 19 6 5.1506 0.3686 -6.5943 20 9 6.0034 0.9528 -5.6517 21 9 5.8315 0.2138 -7.8065 22 7 4.5721 -1.2595 -4.8726 23 6 3.7111 -3.1772 1.4082 24 6 4.1203 -2.3089 2.6032 25 8 5.5265 -2.0596 2.5513 26 6 5.9516 -1.3558 1.3826 27 6 5.6177 -2.1848 0.1397 28 1 -0.4849 0.8401 0.0004 29 1 3.8647 -0.3653 -0.0739 30 1 4.3937 -4.2581 -1.0493 31 1 2.7261 -3.6353 -1.0506 32 1 4.3498 -1.7076 -2.2933 33 1 3.7407 -4.0085 -6.3781 34 1 4.4241 -2.0125 -7.9785 35 1 4.2818 1.0094 -6.7447 36 1 2.6322 -3.3318 1.4200 37 1 4.2186 -4.1400 1.4673 38 1 3.8772 -2.8286 3.5299 39 1 3.5816 -1.3619 2.5654 40 1 7.0277 -1.1890 1.4300 41 1 5.4371 -0.3963 1.3286 42 1 6.1636 -3.1276 0.1731 43 1 5.9013 -1.6313 -0.7555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271043685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:27 Heat of formation + Delta-G solvation = -95.583183 kcal Electronic energy + Delta-G solvation = -31299.252727 eV Core-core repulsion = 26631.228665 eV Total energy + Delta-G solvation = -4668.024062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.45532 -48.56586 -43.73786 -41.12418 -40.04374 -37.40419 -35.21880 -34.19217 -33.75558 -32.02666 -31.92484 -31.63292 -28.91280 -27.30750 -25.70887 -24.71232 -24.19178 -23.03936 -22.72971 -21.15222 -20.12824 -19.81504 -19.78679 -19.30240 -18.63703 -18.20027 -17.17626 -17.04311 -16.81768 -16.72048 -16.31608 -16.25014 -15.73177 -15.62221 -15.38734 -15.28814 -15.06631 -14.93437 -14.82604 -14.45785 -14.29278 -14.19307 -14.03746 -13.75397 -13.32109 -13.25014 -13.00034 -12.91453 -12.70821 -12.19325 -12.15871 -12.11013 -11.77419 -11.55013 -11.32012 -11.20203 -10.98986 -10.66338 -10.40246 -10.33844 -9.99522 -9.31929 -7.97023 -5.31677 0.28569 0.73246 1.01895 1.36197 1.39399 1.45551 2.14335 2.32633 2.49009 2.49572 2.78525 3.03290 3.33437 3.43979 3.46735 3.56541 3.73452 3.79021 3.87006 4.06712 4.09476 4.18230 4.40388 4.53896 4.56860 4.61534 4.68660 4.73113 4.77326 4.84861 4.98674 5.04274 5.11488 5.16301 5.25699 5.27339 5.44656 5.46647 5.83881 6.25222 6.33021 6.37472 6.68007 7.10452 7.13228 7.82816 8.02694 9.24292 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.003847 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.453137 B = 7277.324771 C = 7993.343948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.058 4.058 3 Si 0.940 3.060 4 H -0.284 1.284 5 H -0.248 1.248 6 H -0.305 1.305 7 C -0.202 4.202 8 H 0.058 0.942 9 N -0.735 5.735 10 C 0.192 3.808 11 C 0.124 3.876 12 N -0.685 5.685 13 C 0.593 3.407 14 O -0.573 6.573 15 C -0.018 4.018 16 C -0.187 4.187 17 C 0.021 3.979 18 N -0.352 5.352 19 C 0.500 3.500 20 F -0.183 7.183 21 F -0.170 7.170 22 N -0.266 5.266 23 C -0.148 4.148 24 C 0.074 3.926 25 O -0.393 6.393 26 C 0.062 3.938 27 C -0.147 4.147 28 H 0.253 0.747 29 H 0.365 0.635 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.408 0.592 33 H 0.178 0.822 34 H 0.236 0.764 35 H 0.210 0.790 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.037 0.963 40 H 0.117 0.883 41 H 0.038 0.962 42 H 0.095 0.905 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.251 -0.119 -13.485 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.249 4.249 3 Si 0.769 3.231 4 H -0.211 1.211 5 H -0.173 1.173 6 H -0.232 1.232 7 C -0.333 4.333 8 H 0.076 0.924 9 N -0.379 5.379 10 C 0.101 3.899 11 C -0.002 4.002 12 N -0.334 5.334 13 C 0.378 3.622 14 O -0.451 6.451 15 C -0.180 4.180 16 C -0.215 4.215 17 C -0.119 4.119 18 N -0.150 5.150 19 C 0.370 3.630 20 F -0.164 7.164 21 F -0.151 7.151 22 N -0.101 5.101 23 C -0.188 4.188 24 C -0.003 4.003 25 O -0.312 6.312 26 C -0.015 4.015 27 C -0.185 4.185 28 H 0.062 0.938 29 H 0.200 0.800 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.244 0.756 33 H 0.195 0.805 34 H 0.252 0.748 35 H 0.226 0.774 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.056 0.944 40 H 0.135 0.865 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.303 0.049 -12.759 19.924 hybrid contribution -0.547 0.904 -0.585 1.207 sum 14.755 0.952 -13.344 19.917 Atomic orbital electron populations 1.69876 1.07112 1.26137 1.60335 1.25322 0.95739 1.00524 1.03298 0.85629 0.78915 0.80787 0.77730 1.21113 1.17284 1.23202 1.18736 0.82094 0.92917 1.39602 0.92415 1.42816 1.02551 1.03608 1.88903 1.20019 0.91718 0.86001 0.92122 1.21766 0.99860 0.94929 0.83619 1.45616 1.66137 1.16775 1.04914 1.17185 0.77209 0.85299 0.82548 1.90735 1.49106 1.17891 1.87389 1.22129 1.08293 0.91680 0.95916 1.22138 1.07523 1.02243 0.89584 1.23480 1.02598 0.85106 1.00705 1.47138 1.49702 1.13763 1.04360 1.22268 0.89589 0.79244 0.71941 1.93128 1.73975 1.82932 1.66382 1.93153 1.82669 1.95274 1.44010 1.73554 1.18717 1.15937 1.01889 1.22413 1.01612 0.99343 0.95401 1.22423 0.80995 0.98648 0.98211 1.87827 1.23736 1.77330 1.42305 1.22630 1.00941 0.93641 0.84255 1.22377 0.93985 1.02776 0.99409 0.93767 0.80009 0.90528 0.94342 0.75555 0.80488 0.74773 0.77428 0.92329 0.89823 0.88061 0.94428 0.86504 0.94330 0.88672 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.58 13.97 21.65 0.30 -61.28 16 2 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 3 Si 0.94 43.76 27.79 68.60 1.91 45.66 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.25 -10.18 6.45 99.48 0.64 -9.54 16 6 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 7 C -0.20 -10.58 9.16 84.03 0.77 -9.81 16 8 H 0.06 3.41 7.00 -2.91 -0.02 3.39 16 9 N -0.73 -30.36 3.42 -302.80 -1.04 -31.40 16 10 C 0.19 6.52 0.41 3.72 0.00 6.52 16 11 C 0.12 4.48 4.36 86.38 0.38 4.86 16 12 N -0.69 -24.63 5.13 -466.09 -2.39 -27.02 16 13 C 0.59 22.08 7.82 86.75 0.68 22.76 16 14 O -0.57 -24.16 16.93 -3.93 -0.07 -24.22 16 15 C -0.02 -0.57 7.13 42.46 0.30 -0.27 16 16 C -0.19 -4.48 10.81 22.41 0.24 -4.23 16 17 C 0.02 0.35 10.98 83.54 0.92 1.27 16 18 N -0.35 -7.10 3.68 -364.70 -1.34 -8.45 16 19 C 0.50 6.40 6.56 127.77 0.84 7.23 16 20 F -0.18 -3.48 17.26 44.97 0.78 -2.70 16 21 F -0.17 -1.89 16.96 44.97 0.76 -1.13 16 22 N -0.27 -7.66 11.41 -48.18 -0.55 -8.21 16 23 C -0.15 -4.92 4.80 30.75 0.15 -4.77 16 24 C 0.07 2.40 6.68 72.08 0.48 2.88 16 25 O -0.39 -12.06 10.77 -148.98 -1.60 -13.67 16 26 C 0.06 1.67 6.67 72.01 0.48 2.15 16 27 C -0.15 -3.98 4.80 30.68 0.15 -3.83 16 28 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.37 14.75 4.63 -92.71 -0.43 14.33 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.04 1.66 7.46 -2.39 -0.02 1.64 16 32 H 0.41 14.36 7.14 -92.71 -0.66 13.70 16 33 H 0.18 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.21 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 2.25 7.20 -2.39 -0.02 2.23 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.04 1.43 7.75 -2.38 -0.02 1.41 16 40 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.04 1.14 7.14 -2.38 -0.02 1.13 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.08 2.04 7.36 -2.38 -0.02 2.02 16 Total: -1.00 -76.18 362.60 2.53 -73.65 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.08 Total: 36.78 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 5.85 Total: 21.99 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -5.01 Total: -136.36 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.67 Total: -37.89 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.54 Total: -3.83 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.91 Total: 45.66 kcal Total: -76.18 2.53 -73.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271043685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.933 kcal (2) G-P(sol) polarization free energy of solvation -76.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds