Wall clock time and date at job start Wed Apr 1 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38742 * 119.65879 * 2 1 4 4 C 1.36735 * 120.42271 * 179.97438 * 3 2 1 5 5 C 1.39399 * 119.71514 * 359.75845 * 4 3 2 6 6 C 1.46789 * 134.37182 * 179.56674 * 5 4 3 7 7 C 1.50696 * 126.90748 * 0.72759 * 6 5 4 8 8 C 1.50709 * 109.46901 * 84.71509 * 7 6 5 9 9 O 1.21282 * 119.99617 * 0.02562 * 8 7 6 10 10 N 1.34767 * 120.00019 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99718 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46749 * 180.02562 * 11 10 8 13 13 O 1.42904 * 113.41731 * 51.80016 * 12 11 10 14 14 C 1.53504 * 114.20366 * 185.00010 * 12 11 10 15 15 N 1.47066 * 88.04678 * 87.54725 * 14 12 11 16 16 C 1.36941 * 136.05541 * 207.05070 * 15 14 12 17 17 H 1.07998 * 119.99878 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99593 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00459 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99771 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46679 * 89.99981 * 20 18 16 22 22 H 1.48491 * 109.47288 * 209.99798 * 20 18 16 23 23 H 1.48502 * 109.47105 * 330.00301 * 20 18 16 24 24 C 1.47064 * 87.88659 * 27.09306 * 15 14 12 25 25 C 1.33997 * 106.18577 * 180.47432 * 6 5 4 26 26 O 1.34450 * 110.15429 * 0.23695 * 25 6 5 27 27 C 1.34802 * 110.89042 * 0.02562 * 26 25 6 28 28 C 1.37850 * 119.65912 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47541 * 269.97633 * 1 2 3 30 30 H 1.08999 * 109.47222 * 29.98509 * 1 2 3 31 31 H 1.09008 * 109.46862 * 149.98173 * 1 2 3 32 32 H 1.08001 * 119.78864 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.14130 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47431 * 324.72064 * 7 6 5 35 35 H 1.08998 * 109.47721 * 204.71111 * 7 6 5 36 36 H 0.96999 * 120.00738 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.47151 * 60.00171 * 11 10 8 38 38 H 1.09002 * 109.47077 * 299.99631 * 11 10 8 39 39 H 0.96700 * 113.99553 * 313.20347 * 13 12 11 40 40 H 1.09002 * 113.46865 * 332.73821 * 14 12 11 41 41 H 1.08999 * 113.46581 * 202.35597 * 14 12 11 42 42 H 0.97000 * 120.00117 * 180.02562 * 19 18 16 43 43 H 1.08999 * 113.47096 * 87.65665 * 24 15 14 44 44 H 1.09005 * 113.46966 * 218.04058 * 24 15 14 45 45 H 1.07997 * 124.92435 * 180.21750 * 25 6 5 46 46 H 1.07996 * 120.09167 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2057 0.0000 4 6 3.5608 1.2239 0.0005 5 6 4.2678 0.0225 0.0062 6 6 5.6928 -0.3300 0.0004 7 6 6.8606 0.6224 0.0008 8 6 7.1715 1.0356 1.4164 9 8 6.5100 0.5991 2.3345 10 7 8.1843 1.8899 1.6620 11 6 8.4861 2.2919 3.0381 12 6 9.6711 3.2598 3.0384 13 8 9.5064 4.3595 2.1408 14 6 10.1582 3.6578 4.4386 15 7 11.0268 2.4712 4.4188 16 6 11.5782 1.6371 5.3545 17 1 11.3900 1.8044 6.4047 18 6 12.3790 0.5767 4.9530 19 7 12.6087 0.3732 3.6731 20 14 13.1306 -0.5615 6.2294 21 1 12.2010 -1.6884 6.4962 22 1 14.4200 -1.0935 5.7202 23 1 13.3680 0.1925 7.4865 24 6 11.0435 2.5752 2.9519 25 6 5.7463 -1.6689 0.0005 26 8 4.5037 -2.1822 0.0005 27 6 3.5786 -1.2017 -0.0002 28 6 2.1891 -1.1979 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6445 2.1357 0.0004 33 1 4.0906 2.1650 0.0009 34 1 6.6103 1.5046 -0.5884 35 1 7.7309 0.1304 -0.4334 36 1 8.7136 2.2387 0.9278 37 1 8.7367 1.4101 3.6276 38 1 7.6156 2.7839 3.4721 39 1 9.1994 4.1054 1.2597 40 1 9.3784 3.6122 5.1988 41 1 10.7087 4.5984 4.4556 42 1 13.1680 -0.3680 3.3926 43 1 11.8297 3.2275 2.5719 44 1 11.0174 1.6090 2.4479 45 1 6.6558 -2.2513 0.0003 46 1 1.6451 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271388145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:45 Heat of formation + Delta-G solvation = -22.551064 kcal Electronic energy + Delta-G solvation = -29315.328597 eV Core-core repulsion = 25172.408224 eV Total energy + Delta-G solvation = -4142.920373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.43030 -41.22636 -40.09362 -39.15219 -36.70553 -35.29113 -35.06130 -34.08082 -32.70719 -31.45332 -30.39096 -29.25083 -27.47492 -27.20553 -26.53856 -24.27926 -24.15334 -22.38933 -22.06134 -21.00412 -20.55361 -18.96545 -18.69673 -18.22425 -17.98180 -17.59485 -17.10165 -17.01247 -16.60161 -16.31414 -16.13322 -15.82972 -15.42535 -15.22874 -15.01276 -14.79352 -14.44350 -14.41991 -14.36644 -14.01026 -13.65054 -13.57176 -13.37852 -12.99503 -12.96438 -12.91980 -12.82355 -12.78423 -12.62747 -12.48541 -12.20979 -11.94213 -11.79988 -11.54573 -11.20030 -10.93953 -10.69244 -10.65254 -10.14545 -9.55031 -9.01913 -9.00047 -7.96311 -5.30475 -0.03672 0.39225 1.26558 1.44040 1.45947 1.53956 1.65377 1.86443 2.20115 2.41038 2.73660 3.07646 3.24935 3.43125 3.50512 3.51930 3.57335 3.83905 3.87751 3.93450 4.00527 4.16599 4.31672 4.37947 4.39271 4.50106 4.58790 4.66527 4.68448 4.79646 4.80451 4.83659 4.86823 4.91092 4.95817 5.15013 5.19632 5.25631 5.30387 5.33173 5.39940 5.44430 5.48013 5.55590 5.74798 5.84706 6.19780 6.50583 6.79829 6.85473 7.26198 7.53034 8.50690 9.20785 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.002378 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.365473 B =11770.525558 C =12743.972200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.065 4.065 3 C -0.137 4.137 4 C -0.080 4.080 5 C -0.141 4.141 6 C -0.173 4.173 7 C -0.058 4.058 8 C 0.511 3.489 9 O -0.582 6.582 10 N -0.713 5.713 11 C 0.144 3.856 12 C 0.092 3.908 13 O -0.545 6.545 14 C 0.131 3.869 15 N -0.632 5.632 16 C -0.230 4.230 17 H 0.087 0.913 18 C -0.062 4.062 19 N -0.947 5.947 20 Si 0.979 3.021 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.138 3.862 25 C 0.008 3.992 26 O -0.208 6.208 27 C 0.023 3.977 28 C -0.124 4.124 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.414 0.586 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.387 0.613 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.250 0.750 43 H 0.021 0.979 44 H 0.051 0.949 45 H 0.233 0.767 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.956 2.007 -14.919 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.066 4.066 3 C -0.155 4.155 4 C -0.098 4.098 5 C -0.142 4.142 6 C -0.175 4.175 7 C -0.097 4.097 8 C 0.300 3.700 9 O -0.461 6.461 10 N -0.367 5.367 11 C 0.019 3.981 12 C 0.049 3.951 13 O -0.351 6.351 14 C 0.005 3.995 15 N -0.360 5.360 16 C -0.357 4.357 17 H 0.104 0.896 18 C -0.256 4.256 19 N -0.595 5.595 20 Si 0.807 3.193 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.193 1.193 24 C 0.011 3.989 25 C -0.056 4.056 26 O -0.110 6.110 27 C -0.024 4.024 28 C -0.142 4.142 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.251 0.749 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.237 0.763 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.249 0.751 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.106 1.517 -13.619 25.165 hybrid contribution 1.320 -0.858 0.155 1.582 sum -19.786 0.659 -13.463 23.941 Atomic orbital electron populations 1.20855 0.87882 1.04359 1.03455 1.20064 0.97896 0.91294 0.97313 1.21031 0.93502 0.98941 1.02007 1.20528 0.94606 0.96403 0.98260 1.20054 0.93133 0.94707 1.06280 1.20701 0.92850 0.94313 1.09646 1.20047 0.96847 1.00578 0.92232 1.21238 0.78947 0.77498 0.92366 1.90723 1.51361 1.55753 1.48282 1.45727 1.34290 1.47909 1.08814 1.21083 0.95776 0.97017 0.84198 1.23095 0.93173 0.86727 0.92121 1.86546 1.89877 1.32448 1.26258 1.22490 0.92809 0.90952 0.93288 1.45485 1.57898 1.28984 1.03594 1.19252 1.23836 1.04565 0.88062 0.89575 1.25621 1.01016 1.00610 0.98353 1.69977 1.42643 1.32156 1.14759 0.85074 0.77222 0.78660 0.78353 1.21430 1.21765 1.19288 1.22702 0.92672 0.97567 0.85922 1.24349 0.86181 0.94032 1.01027 1.83967 1.14987 1.35359 1.76658 1.20035 0.91961 0.86124 1.04267 1.20085 0.87822 1.00186 1.06141 0.90161 0.89542 0.90314 0.82807 0.84521 0.84588 0.84572 0.74858 0.93266 0.90990 0.76310 0.92243 0.92902 0.94113 0.96108 0.93017 0.75072 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.99 71.24 0.71 -0.39 16 2 C -0.07 -1.16 5.88 -19.84 -0.12 -1.28 16 3 C -0.14 -2.47 9.62 22.04 0.21 -2.26 16 4 C -0.08 -1.76 10.05 22.20 0.22 -1.53 16 5 C -0.14 -3.70 6.38 -20.21 -0.13 -3.83 16 6 C -0.17 -4.22 4.85 -18.59 -0.09 -4.31 16 7 C -0.06 -1.07 6.25 29.10 0.18 -0.89 16 8 C 0.51 14.45 7.82 87.66 0.69 15.14 16 9 O -0.58 -22.89 16.03 -3.04 -0.05 -22.94 16 10 N -0.71 -18.62 5.32 -463.05 -2.46 -21.08 16 11 C 0.14 4.98 5.32 86.38 0.46 5.44 16 12 C 0.09 3.24 1.74 -10.42 -0.02 3.22 16 13 O -0.55 -15.55 13.56 -148.98 -2.02 -17.57 16 14 C 0.13 5.36 8.10 83.18 0.67 6.04 16 15 N -0.63 -32.28 3.57 -738.18 -2.63 -34.91 16 16 C -0.23 -12.88 10.75 84.03 0.90 -11.98 16 17 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 18 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 19 N -0.95 -56.06 11.51 21.65 0.25 -55.81 16 20 Si 0.98 45.81 29.55 68.60 2.03 47.83 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 C 0.14 6.28 6.81 83.22 0.57 6.84 16 25 C 0.01 0.20 11.89 66.85 0.79 1.00 16 26 O -0.21 -5.70 10.58 -8.87 -0.09 -5.79 16 27 C 0.02 0.62 7.42 22.99 0.17 0.79 16 28 C -0.12 -2.68 9.70 22.35 0.22 -2.46 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.60 8.08 -2.39 -0.02 0.59 16 31 H 0.08 0.64 8.08 -2.38 -0.02 0.62 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.41 7.61 7.24 -92.71 -0.67 6.94 16 37 H 0.05 2.18 7.94 -2.39 -0.02 2.16 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.39 7.15 7.50 -74.06 -0.56 6.59 16 40 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 2.58 7.10 -2.38 -0.02 2.57 16 45 H 0.23 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -81.24 390.78 0.73 -80.51 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.20 Total: 23.32 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.91 Total: 6.45 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -4.85 Total: -111.80 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -2.16 Total: -46.31 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -81.24 0.73 -80.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271388145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.958 kcal (2) G-P(sol) polarization free energy of solvation -81.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds