Wall clock time and date at job start Wed Apr 1 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37844 * 120.06935 * 2 1 4 4 C 1.38792 * 120.74076 * 180.02562 * 3 2 1 5 5 C 1.36657 * 120.44504 * 0.27272 * 4 3 2 6 6 C 1.39665 * 119.71007 * 359.47457 * 5 4 3 7 7 C 1.46243 * 134.19127 * 180.19738 * 6 5 4 8 8 C 1.35812 * 106.07846 * 180.28921 * 7 6 5 9 9 C 1.46981 * 125.12460 * 180.02562 * 8 7 6 10 10 O 1.21653 * 120.00142 * 7.60704 * 9 8 7 11 11 N 1.34781 * 119.99639 * 187.60768 * 9 8 7 12 12 C 1.47146 * 120.98124 * 7.10834 * 11 9 8 13 13 C 1.53293 * 108.38334 * 129.44579 * 12 11 9 14 14 O 1.42967 * 109.22600 * 52.30170 * 13 12 11 15 15 C 1.42962 * 114.16468 * 297.42399 * 14 13 12 16 16 H 1.09001 * 109.50896 * 302.65305 * 15 14 13 17 17 C 1.52998 * 109.51257 * 182.55295 * 15 14 13 18 18 N 1.46497 * 109.47253 * 64.99760 * 17 15 14 19 19 C 1.36940 * 120.00236 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99543 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00096 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99859 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99903 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47523 * 89.99936 * 23 21 19 25 25 H 1.48504 * 109.46663 * 209.99917 * 23 21 19 26 26 H 1.48504 * 109.47311 * 329.99732 * 23 21 19 27 27 C 1.47148 * 120.98192 * 186.83303 * 11 9 8 28 28 O 1.34941 * 109.74557 * 0.02562 * 8 7 6 29 29 C 1.34722 * 110.86368 * 359.97438 * 28 8 7 30 30 H 1.09002 * 109.46793 * 269.96789 * 1 2 3 31 31 H 1.08997 * 109.48049 * 29.96989 * 1 2 3 32 32 H 1.08999 * 109.47335 * 149.97581 * 1 2 3 33 33 H 1.07997 * 119.62682 * 0.05220 * 3 2 1 34 34 H 1.08003 * 119.77664 * 180.02562 * 4 3 2 35 35 H 1.08005 * 120.14429 * 179.69802 * 5 4 3 36 36 H 1.08004 * 126.96525 * 0.27187 * 7 6 5 37 37 H 1.08998 * 109.68444 * 249.16820 * 12 11 9 38 38 H 1.08997 * 109.68247 * 9.68544 * 12 11 9 39 39 H 1.09002 * 109.51384 * 172.22761 * 13 12 11 40 40 H 1.08999 * 109.51306 * 292.37937 * 13 12 11 41 41 H 1.09006 * 109.47026 * 184.99957 * 17 15 14 42 42 H 1.09002 * 109.47102 * 304.99697 * 17 15 14 43 43 H 0.96998 * 119.99904 * 0.02562 * 18 17 15 44 44 H 0.96998 * 119.99994 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.67847 * 350.27938 * 27 11 9 46 46 H 1.08996 * 109.68626 * 110.82662 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1929 0.0000 4 6 3.5854 1.2092 -0.0005 5 6 4.2916 0.0393 -0.0067 6 6 3.6109 -1.1802 -0.0013 7 6 4.0296 -2.5814 -0.0015 8 6 2.8869 -3.3155 -0.0010 9 6 2.8251 -4.7840 -0.0005 10 8 3.8429 -5.4356 0.1390 11 7 1.6408 -5.4086 -0.1545 12 6 0.4216 -4.6513 -0.4790 13 6 -0.2555 -5.3175 -1.6822 14 8 -0.4264 -6.7114 -1.4140 15 6 0.7979 -7.4263 -1.2299 16 1 1.4253 -7.3072 -2.1133 17 6 0.4955 -8.9105 -1.0142 18 7 -0.1001 -9.4694 -2.2304 19 6 -0.4561 -10.7910 -2.2736 20 1 -0.2983 -11.4211 -1.4109 21 6 -1.0209 -11.3204 -3.4259 22 7 -1.3636 -12.5905 -3.4671 23 14 -1.2946 -10.2301 -4.9178 24 1 -0.0916 -10.2699 -5.7874 25 1 -2.4720 -10.7194 -5.6790 26 1 -1.5379 -8.8343 -4.4730 27 6 1.5299 -6.8687 -0.0091 28 8 1.8169 -2.4933 -0.0011 29 6 2.2035 -1.2027 -0.0011 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3635 0.8902 -0.5133 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6527 2.1253 0.0009 34 1 4.1108 2.1528 -0.0001 35 1 5.3715 0.0576 -0.0120 36 1 5.0424 -2.9567 -0.0023 37 1 -0.2553 -4.6616 0.3753 38 1 0.6834 -3.6229 -0.7274 39 1 -1.2289 -4.8576 -1.8530 40 1 0.3681 -5.1909 -2.5671 41 1 1.4203 -9.4403 -0.7859 42 1 -0.2017 -9.0223 -0.1838 43 1 -0.2415 -8.9034 -3.0054 44 1 -1.7579 -12.9605 -4.2724 45 1 2.5256 -7.3080 0.0528 46 1 0.9667 -7.1061 0.8933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280684590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:28 Heat of formation + Delta-G solvation = -16.459473 kcal Electronic energy + Delta-G solvation = -29723.252580 eV Core-core repulsion = 25580.596359 eV Total energy + Delta-G solvation = -4142.656221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.02410 -40.42376 -38.67951 -38.36362 -35.32567 -34.63942 -34.07697 -32.34090 -31.86824 -30.78406 -30.16494 -28.36920 -27.42640 -26.29069 -23.99890 -23.64061 -23.07455 -21.98933 -21.18146 -21.05148 -19.97029 -18.44819 -17.80643 -17.54950 -16.97609 -16.70974 -16.26918 -16.11524 -15.61584 -15.34213 -15.12674 -14.62547 -14.42922 -14.32849 -14.20744 -13.91837 -13.66684 -13.58425 -13.39981 -13.15165 -12.90767 -12.75535 -12.54897 -12.44432 -12.21886 -12.09451 -11.79965 -11.43546 -11.25094 -11.08859 -10.85148 -10.77800 -10.49210 -10.33618 -10.14531 -10.03685 -9.56458 -9.11292 -8.89025 -8.81664 -8.56508 -7.20875 -5.73705 -3.09077 0.11880 0.86388 1.39981 1.95480 2.54604 2.78008 3.18980 3.41559 3.46460 3.48500 3.78395 3.80473 4.06002 4.35706 4.43758 4.52754 4.57381 4.63459 4.71528 4.77894 4.87643 4.94034 4.97714 5.03556 5.07036 5.15151 5.16148 5.30018 5.34240 5.49845 5.53938 5.55676 5.59245 5.67982 5.74012 5.74922 5.84733 5.87555 5.90318 5.95298 6.02978 6.15099 6.44387 6.56757 6.57858 6.93688 7.27481 7.62799 8.01180 8.44842 9.23892 9.96251 10.16251 11.44514 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.002291 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.046898 B =12219.161172 C =12851.421534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.089 4.089 4 C -0.133 4.133 5 C -0.066 4.066 6 C -0.139 4.139 7 C -0.111 4.111 8 C -0.022 4.022 9 C 0.599 3.401 10 O -0.512 6.512 11 N -0.601 5.601 12 C 0.062 3.938 13 C 0.046 3.954 14 O -0.360 6.360 15 C 0.068 3.932 16 H 0.065 0.935 17 C 0.168 3.832 18 N -0.750 5.750 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.274 1.274 27 C 0.086 3.914 28 O -0.176 6.176 29 C 0.063 3.937 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.171 0.829 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.364 0.636 44 H 0.259 0.741 45 H 0.107 0.893 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 32.980 8.877 35.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 C -0.107 4.107 4 C -0.152 4.152 5 C -0.084 4.084 6 C -0.140 4.140 7 C -0.131 4.131 8 C -0.072 4.072 9 C 0.386 3.614 10 O -0.389 6.389 11 N -0.334 5.334 12 C -0.060 4.060 13 C -0.032 4.032 14 O -0.278 6.278 15 C 0.010 3.990 16 H 0.083 0.917 17 C 0.041 3.959 18 N -0.396 5.396 19 C -0.373 4.373 20 H 0.109 0.891 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.200 1.200 27 C -0.037 4.037 28 O -0.079 6.079 29 C 0.015 3.985 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.188 0.812 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.197 0.803 44 H 0.069 0.931 45 H 0.126 0.874 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.202 32.170 9.041 34.408 hybrid contribution 0.086 0.943 -1.143 1.484 sum 8.288 33.113 7.898 35.036 Atomic orbital electron populations 1.20776 0.90010 1.03438 1.02948 1.18874 0.96446 0.88281 1.03918 1.20932 0.94245 0.96518 0.98973 1.20795 0.94039 0.98207 1.02110 1.20374 1.00175 0.89982 0.97901 1.19904 0.93033 0.93903 1.07137 1.22756 0.99257 0.90105 1.01016 1.21947 0.85528 0.90719 1.08985 1.16789 0.83707 0.83371 0.77550 1.90897 1.33489 1.64008 1.50548 1.48039 1.07880 1.08625 1.68850 1.22932 0.86412 0.96864 0.99799 1.22945 1.01552 0.83315 0.95377 1.88157 1.29420 1.18635 1.91566 1.22801 0.85970 0.94059 0.96205 0.91750 1.20598 0.97448 0.86525 0.91379 1.42568 1.75869 1.09158 1.12009 1.19047 1.33721 0.84333 1.00200 0.89120 1.24656 1.00869 0.95807 0.97793 1.69701 1.48197 1.11824 1.28482 0.86545 0.77616 0.80596 0.83900 1.21175 1.21738 1.19993 1.22370 1.03637 0.77912 0.99735 1.84216 1.33237 1.14111 1.76324 1.19710 0.92891 0.83827 1.02085 0.90704 0.90839 0.91138 0.84570 0.85027 0.85123 0.81150 0.89876 0.87241 0.87483 0.92838 0.93602 0.94327 0.80304 0.93079 0.87438 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.02 36.00 0.36 -0.28 16 2 C -0.07 -0.57 5.89 -104.49 -0.62 -1.18 16 3 C -0.09 -0.53 9.67 -39.52 -0.38 -0.91 16 4 C -0.13 -0.79 9.98 -39.95 -0.40 -1.19 16 5 C -0.07 -0.48 10.06 -39.62 -0.40 -0.88 16 6 C -0.14 -1.34 6.38 -105.20 -0.67 -2.01 16 7 C -0.11 -1.16 10.81 -37.24 -0.40 -1.56 16 8 C -0.02 -0.26 6.73 -36.91 -0.25 -0.51 16 9 C 0.60 8.07 7.67 -12.72 -0.10 7.97 16 10 O -0.51 -8.16 16.31 5.23 0.09 -8.08 16 11 N -0.60 -7.67 3.03 -173.97 -0.53 -8.20 16 12 C 0.06 0.66 6.23 -3.54 -0.02 0.64 16 13 C 0.05 0.55 6.98 37.31 0.26 0.81 16 14 O -0.36 -5.89 10.33 -35.23 -0.36 -6.25 16 15 C 0.07 1.10 2.80 -26.79 -0.07 1.03 16 16 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 17 C 0.17 3.28 5.93 -4.04 -0.02 3.26 16 18 N -0.75 -18.41 5.35 -59.91 -0.32 -18.73 16 19 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 23 Si 0.88 22.64 27.74 -169.99 -4.71 17.93 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.27 -6.70 6.52 56.52 0.37 -6.33 16 27 C 0.09 1.16 5.92 -3.75 -0.02 1.14 16 28 O -0.18 -1.86 7.14 2.77 0.02 -1.84 16 29 C 0.06 0.61 7.07 -38.35 -0.27 0.34 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.11 1.06 4.42 -52.53 -0.23 0.83 16 39 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.36 8.88 5.53 -40.82 -0.23 8.65 16 44 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 45 H 0.11 1.48 7.06 -51.93 -0.37 1.12 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -35.27 379.63 -8.91 -44.19 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.33 Total: 4.76 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -3.26 Total: -0.48 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.07 Total: -55.93 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.26 Total: -16.18 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.27 -8.91 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280684590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.729 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds