Wall clock time and date at job start Wed Apr 1 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99767 * 2 1 4 4 H 1.48501 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46947 * 299.99934 * 3 2 1 6 6 H 1.48496 * 109.47225 * 59.99622 * 3 2 1 7 7 C 1.38809 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99665 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99825 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47349 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.52746 * 301.02405 * 11 10 9 13 13 C 1.53196 * 109.49884 * 61.10313 * 11 10 9 14 14 N 1.46922 * 108.77219 * 65.31872 * 13 11 10 15 15 C 1.34782 * 120.62779 * 233.58974 * 14 13 11 16 16 O 1.21606 * 120.00315 * 0.02562 * 15 14 13 17 17 C 1.43203 * 119.99863 * 180.02562 * 15 14 13 18 18 C 7.24704 * 100.24836 * 230.72190 * 2 1 3 19 19 C 8.48135 * 104.72255 * 234.60519 * 2 1 3 20 20 C 1.53000 * 117.49904 * 276.50375 * 19 18 17 21 21 C 1.52995 * 117.50005 * 207.84196 * 19 18 17 22 22 C 1.46927 * 118.74074 * 53.61047 * 14 13 11 23 23 C 1.53193 * 108.77497 * 306.38808 * 22 14 13 24 24 C 1.53039 * 109.31133 * 54.63667 * 23 22 14 25 25 H 1.09002 * 109.45907 * 58.64989 * 24 23 22 26 26 C 1.52992 * 109.46163 * 178.61181 * 24 23 22 27 27 F 1.39905 * 109.47197 * 53.46289 * 26 24 23 28 28 F 1.39899 * 109.47313 * 173.45811 * 26 24 23 29 29 F 1.39898 * 109.47174 * 293.46091 * 26 24 23 30 30 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00543 * 359.97438 * 9 7 2 32 32 H 1.09006 * 109.47203 * 59.99848 * 10 9 7 33 33 H 1.09001 * 109.47424 * 300.00059 * 10 9 7 34 34 H 1.08997 * 109.58556 * 305.53194 * 13 11 10 35 35 H 1.08994 * 109.70426 * 185.17378 * 13 11 10 36 36 H 1.09000 * 115.55104 * 62.16758 * 19 18 17 37 37 H 1.08998 * 117.50225 * 359.97438 * 20 19 18 38 38 H 1.09005 * 117.50436 * 145.02304 * 20 19 18 39 39 H 1.08997 * 117.50013 * 214.97768 * 21 19 18 40 40 H 1.09004 * 117.50044 * 359.97438 * 21 19 18 41 41 H 1.09003 * 109.58504 * 186.60207 * 22 14 13 42 42 H 1.08996 * 109.70194 * 66.25278 * 22 14 13 43 43 H 1.08996 * 109.49984 * 294.68411 * 23 22 14 44 44 H 1.08998 * 109.49418 * 174.58377 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8196 0.0012 12 1 0.4252 -4.7523 0.8818 13 6 0.2008 -4.7551 -1.2628 14 7 1.0599 -4.9774 -2.4338 15 6 1.0709 -4.0970 -3.4543 16 8 0.3659 -3.1071 -3.4111 17 6 1.9131 -4.3272 -4.5894 18 6 2.6056 -4.5148 -5.5203 19 6 3.4717 -4.7512 -6.6868 20 6 4.8777 -5.2943 -6.4243 21 6 4.6878 -3.8392 -6.8601 22 6 1.9062 -6.1778 -2.4715 23 6 2.7503 -6.2263 -1.1940 24 6 1.8285 -6.1452 0.0249 25 1 1.1202 -6.9734 0.0004 26 6 2.6653 -6.2282 1.3031 27 9 3.6720 -5.2575 1.2653 28 9 1.8440 -6.0051 2.4135 29 9 3.2449 -7.4978 1.3994 30 1 -0.4849 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6849 -3.7144 0.8905 33 1 2.6849 -3.7145 -0.8894 34 1 -0.2687 -3.7741 -1.3349 35 1 -0.5683 -5.5263 -1.2223 36 1 2.9625 -5.0881 -7.5898 37 1 5.1617 -5.4762 -5.3878 38 1 5.2939 -5.9882 -7.1548 39 1 4.9791 -3.5765 -7.8771 40 1 4.8464 -3.0639 -6.1106 41 1 2.5618 -6.1354 -3.3413 42 1 1.2794 -7.0676 -2.5295 43 1 3.4427 -5.3846 -1.1832 44 1 3.3116 -7.1602 -1.1642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316726585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:07 Heat of formation + Delta-G solvation = -87.405903 kcal Electronic energy + Delta-G solvation = -31545.333575 eV Core-core repulsion = 26857.744145 eV Total energy + Delta-G solvation = -4687.589430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.05636 -47.54568 -47.45690 -40.25722 -37.91950 -37.67447 -34.68860 -33.47332 -32.61070 -31.69996 -29.93477 -27.58045 -26.06070 -24.50419 -23.56936 -23.28394 -22.72093 -22.03329 -21.49877 -19.18216 -18.42556 -18.28607 -18.11897 -17.25807 -16.83425 -16.66437 -15.91103 -15.46228 -15.19628 -15.01921 -14.50854 -14.27639 -14.24746 -14.07722 -13.88401 -13.74525 -13.60675 -13.60315 -13.18237 -13.14456 -12.86118 -12.74791 -12.51930 -12.36212 -12.24705 -11.85409 -11.71213 -11.40496 -11.32129 -10.94242 -10.87273 -10.66267 -10.62765 -10.41497 -10.19663 -10.08606 -9.91913 -9.66836 -9.57985 -8.74003 -8.56120 -6.77892 -5.63764 -2.91379 1.68879 2.13877 2.81386 2.96322 3.51526 3.56235 3.58858 3.63244 3.69507 3.85186 3.94030 3.98190 4.07946 4.49097 4.61046 4.63435 4.65666 4.70215 4.79696 4.91179 5.02080 5.12447 5.19411 5.29720 5.32435 5.36690 5.50815 5.53565 5.58781 5.69101 5.72743 5.78218 5.79683 5.85354 6.10653 6.12778 6.47145 6.55614 6.75969 6.82083 7.23107 7.44238 7.81042 8.33543 8.54007 9.65593 10.21683 10.55956 11.59266 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.006359 B = 0.005350 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4402.138469 B = 5231.944250 C = 8139.269847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.067 0.933 9 N -0.725 5.725 10 C 0.144 3.856 11 C -0.113 4.113 12 H 0.099 0.901 13 C 0.126 3.874 14 N -0.600 5.600 15 C 0.628 3.372 16 O -0.488 6.488 17 C -0.195 4.195 18 C -0.076 4.076 19 C -0.060 4.060 20 C -0.162 4.162 21 C -0.162 4.162 22 C 0.117 3.883 23 C -0.139 4.139 24 C -0.123 4.123 25 H 0.114 0.886 26 C 0.455 3.545 27 F -0.171 7.171 28 F -0.181 7.181 29 F -0.190 7.190 30 H 0.253 0.747 31 H 0.383 0.617 32 H 0.038 0.962 33 H 0.021 0.979 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 -20.279 -8.692 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.085 0.915 9 N -0.369 5.369 10 C 0.017 3.983 11 C -0.133 4.133 12 H 0.117 0.883 13 C 0.005 3.995 14 N -0.334 5.334 15 C 0.415 3.585 16 O -0.361 6.361 17 C -0.198 4.198 18 C -0.078 4.078 19 C -0.077 4.077 20 C -0.198 4.198 21 C -0.199 4.199 22 C -0.006 4.006 23 C -0.177 4.177 24 C -0.143 4.143 25 H 0.132 0.868 26 C 0.401 3.599 27 F -0.152 7.152 28 F -0.162 7.162 29 F -0.172 7.172 30 H 0.063 0.937 31 H 0.217 0.783 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.151 0.849 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.731 -19.595 -8.619 22.440 hybrid contribution 0.338 0.857 0.279 0.963 sum 7.069 -18.737 -8.340 21.693 Atomic orbital electron populations 1.69658 1.04996 1.25304 1.57773 1.24678 0.95452 0.97448 1.03058 0.86178 0.78755 0.84542 0.77095 1.20718 1.21939 1.21950 1.19144 0.90792 0.84075 1.42489 0.91520 1.42253 1.05635 0.99637 1.89416 1.21098 0.92946 0.85145 0.99117 1.21842 0.98704 0.92976 0.99739 0.88302 1.21655 0.91193 1.04782 0.81903 1.47736 1.43722 1.22958 1.19005 1.14695 0.81145 0.82601 0.80010 1.90986 1.40594 1.26153 1.78366 1.20806 0.99640 1.02547 0.96786 1.21289 0.94503 0.97950 0.94048 1.18829 0.87766 1.07241 0.93908 1.23111 0.96037 0.97201 1.03498 1.23132 0.98862 0.94109 1.03749 1.21591 0.93401 0.87721 0.97933 1.22070 0.98215 1.04474 0.92911 1.22459 0.98163 1.02630 0.91072 0.86813 1.20573 0.79418 0.73142 0.86795 1.93164 1.62774 1.62624 1.96651 1.93186 1.72178 1.94420 1.56403 1.93150 1.85884 1.41369 1.96784 0.93700 0.78270 0.94475 0.96085 0.86491 0.91391 0.84893 0.88100 0.87547 0.87494 0.87893 0.89326 0.90816 0.89044 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.06 55.49 0.72 -28.56 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 23.62 29.55 -169.99 -5.02 18.60 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 6 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 7 C -0.23 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.72 -18.82 5.26 -59.91 -0.32 -19.14 16 10 C 0.14 2.93 4.53 -4.04 -0.02 2.91 16 11 C -0.11 -1.72 2.11 -90.50 -0.19 -1.91 16 12 H 0.10 1.52 7.61 -51.93 -0.40 1.12 16 13 C 0.13 1.94 5.73 -3.71 -0.02 1.92 16 14 N -0.60 -8.91 2.39 -175.65 -0.42 -9.33 16 15 C 0.63 11.58 7.55 -14.33 -0.11 11.47 16 16 O -0.49 -11.52 16.50 5.27 0.09 -11.43 16 17 C -0.19 -3.08 11.58 -38.82 -0.45 -3.53 16 18 C -0.08 -0.99 13.42 -37.11 -0.50 -1.49 16 19 C -0.06 -0.53 6.21 -93.41 -0.58 -1.11 16 20 C -0.16 -1.12 10.21 -26.69 -0.27 -1.39 16 21 C -0.16 -1.29 10.21 -26.69 -0.27 -1.57 16 22 C 0.12 1.21 6.33 -3.71 -0.02 1.19 16 23 C -0.14 -1.44 4.75 -26.61 -0.13 -1.57 16 24 C -0.12 -1.41 2.02 -90.58 -0.18 -1.60 16 25 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 26 C 0.45 5.93 2.59 37.15 0.10 6.03 16 27 F -0.17 -2.62 13.37 2.25 0.03 -2.59 16 28 F -0.18 -2.59 16.52 2.25 0.04 -2.56 16 29 F -0.19 -2.27 17.03 2.25 0.04 -2.23 16 30 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.38 10.43 6.59 -40.82 -0.27 10.17 16 32 H 0.04 0.79 5.41 -51.93 -0.28 0.51 16 33 H 0.02 0.45 6.00 -51.93 -0.31 0.14 16 34 H 0.12 2.32 5.67 -51.93 -0.29 2.02 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.87 6.32 -51.93 -0.33 0.54 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.16 5.92 -51.93 -0.31 0.86 16 44 H 0.09 0.68 7.95 -51.93 -0.41 0.26 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -35.98 370.49 -7.68 -43.66 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.53 Total: 6.05 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.89 Total: 1.94 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.01 Total: -57.03 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.11 Total: -7.37 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.98 -7.68 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316726585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.746 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds