Wall clock time and date at job start Wed Apr 1 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99767 * 2 1 4 4 H 1.48501 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46947 * 299.99934 * 3 2 1 6 6 H 1.48496 * 109.47225 * 59.99622 * 3 2 1 7 7 C 1.38809 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99665 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99825 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47349 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.52746 * 301.02405 * 11 10 9 13 13 C 1.53196 * 109.49884 * 61.10313 * 11 10 9 14 14 N 1.46922 * 108.77219 * 65.31872 * 13 11 10 15 15 C 1.34782 * 120.62779 * 233.58974 * 14 13 11 16 16 O 1.21606 * 120.00315 * 0.02562 * 15 14 13 17 17 C 1.43203 * 119.99863 * 180.02562 * 15 14 13 18 18 C 7.24704 * 100.24836 * 230.72190 * 2 1 3 19 19 C 8.48135 * 104.72255 * 234.60519 * 2 1 3 20 20 C 1.53000 * 117.49904 * 276.50375 * 19 18 17 21 21 C 1.52995 * 117.50005 * 207.84196 * 19 18 17 22 22 C 1.46927 * 118.74074 * 53.61047 * 14 13 11 23 23 C 1.53193 * 108.77497 * 306.38808 * 22 14 13 24 24 C 1.53039 * 109.31133 * 54.63667 * 23 22 14 25 25 H 1.09002 * 109.45907 * 58.64989 * 24 23 22 26 26 C 1.52992 * 109.46163 * 178.61181 * 24 23 22 27 27 F 1.39905 * 109.47197 * 53.46289 * 26 24 23 28 28 F 1.39899 * 109.47313 * 173.45811 * 26 24 23 29 29 F 1.39898 * 109.47174 * 293.46091 * 26 24 23 30 30 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00543 * 359.97438 * 9 7 2 32 32 H 1.09006 * 109.47203 * 59.99848 * 10 9 7 33 33 H 1.09001 * 109.47424 * 300.00059 * 10 9 7 34 34 H 1.08997 * 109.58556 * 305.53194 * 13 11 10 35 35 H 1.08994 * 109.70426 * 185.17378 * 13 11 10 36 36 H 1.09000 * 115.55104 * 62.16758 * 19 18 17 37 37 H 1.08998 * 117.50225 * 359.97438 * 20 19 18 38 38 H 1.09005 * 117.50436 * 145.02304 * 20 19 18 39 39 H 1.08997 * 117.50013 * 214.97768 * 21 19 18 40 40 H 1.09004 * 117.50044 * 359.97438 * 21 19 18 41 41 H 1.09003 * 109.58504 * 186.60207 * 22 14 13 42 42 H 1.08996 * 109.70194 * 66.25278 * 22 14 13 43 43 H 1.08996 * 109.49984 * 294.68411 * 23 22 14 44 44 H 1.08998 * 109.49418 * 174.58377 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8196 0.0012 12 1 0.4252 -4.7523 0.8818 13 6 0.2008 -4.7551 -1.2628 14 7 1.0599 -4.9774 -2.4338 15 6 1.0709 -4.0970 -3.4543 16 8 0.3659 -3.1071 -3.4111 17 6 1.9131 -4.3272 -4.5894 18 6 2.6056 -4.5148 -5.5203 19 6 3.4717 -4.7512 -6.6868 20 6 4.8777 -5.2943 -6.4243 21 6 4.6878 -3.8392 -6.8601 22 6 1.9062 -6.1778 -2.4715 23 6 2.7503 -6.2263 -1.1940 24 6 1.8285 -6.1452 0.0249 25 1 1.1202 -6.9734 0.0004 26 6 2.6653 -6.2282 1.3031 27 9 3.6720 -5.2575 1.2653 28 9 1.8440 -6.0051 2.4135 29 9 3.2449 -7.4978 1.3994 30 1 -0.4849 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6849 -3.7144 0.8905 33 1 2.6849 -3.7145 -0.8894 34 1 -0.2687 -3.7741 -1.3349 35 1 -0.5683 -5.5263 -1.2223 36 1 2.9625 -5.0881 -7.5898 37 1 5.1617 -5.4762 -5.3878 38 1 5.2939 -5.9882 -7.1548 39 1 4.9791 -3.5765 -7.8771 40 1 4.8464 -3.0639 -6.1106 41 1 2.5618 -6.1354 -3.3413 42 1 1.2794 -7.0676 -2.5295 43 1 3.4427 -5.3846 -1.1832 44 1 3.3116 -7.1602 -1.1642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316726585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:07 Heat of formation + Delta-G solvation = -110.393675 kcal Electronic energy + Delta-G solvation = -31546.330399 eV Core-core repulsion = 26857.744145 eV Total energy + Delta-G solvation = -4688.586254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.12522 -48.60612 -48.54564 -41.50193 -39.17203 -38.46784 -36.45616 -34.92221 -33.67728 -33.34779 -31.59164 -28.72898 -27.71557 -25.78871 -24.85809 -24.52812 -23.47409 -23.28438 -22.57117 -20.44545 -19.59694 -19.41614 -19.23417 -18.97194 -18.16808 -17.56786 -17.18525 -16.73205 -16.67820 -15.97842 -15.82309 -15.71185 -15.59569 -15.28501 -15.18337 -14.99536 -14.90011 -14.70414 -14.46165 -14.43583 -13.97062 -13.91243 -13.87003 -13.50967 -13.29447 -12.99646 -12.94150 -12.75340 -12.41491 -12.35307 -12.27808 -12.20224 -12.01007 -11.97846 -11.74105 -11.57771 -11.38919 -11.08090 -10.91868 -10.63355 -9.76851 -8.95630 -7.95454 -5.22354 0.48501 1.09508 1.39223 1.42186 1.50991 1.78099 1.82744 2.45527 2.52252 2.80608 2.88669 2.93983 3.06410 3.08282 3.38135 3.60509 3.63121 3.83531 3.87513 3.90342 3.95777 4.03673 4.08146 4.23239 4.30150 4.41584 4.47663 4.53374 4.57927 4.70575 4.77278 4.78471 4.93768 4.99484 5.05235 5.10097 5.10774 5.20742 5.23292 5.43073 5.46343 6.13945 6.22863 6.26400 7.02431 7.32661 8.09537 8.31418 9.28394 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.006359 B = 0.005350 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4402.138469 B = 5231.944250 C = 8139.269847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.073 4.073 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.297 1.297 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.146 3.854 11 C -0.104 4.104 12 H 0.098 0.902 13 C 0.127 3.873 14 N -0.592 5.592 15 C 0.621 3.379 16 O -0.564 6.564 17 C -0.258 4.258 18 C -0.032 4.032 19 C -0.081 4.081 20 C -0.139 4.139 21 C -0.167 4.167 22 C 0.113 3.887 23 C -0.134 4.134 24 C -0.112 4.112 25 H 0.160 0.840 26 C 0.454 3.546 27 F -0.189 7.189 28 F -0.190 7.190 29 F -0.178 7.178 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.162 0.838 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.062 0.938 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.936 -23.624 -10.034 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.224 1.224 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.083 0.917 9 N -0.379 5.379 10 C 0.020 3.980 11 C -0.123 4.123 12 H 0.116 0.884 13 C 0.005 3.995 14 N -0.324 5.324 15 C 0.410 3.590 16 O -0.444 6.444 17 C -0.261 4.261 18 C -0.034 4.034 19 C -0.099 4.099 20 C -0.175 4.175 21 C -0.204 4.204 22 C -0.008 4.008 23 C -0.172 4.172 24 C -0.132 4.132 25 H 0.177 0.823 26 C 0.400 3.600 27 F -0.170 7.170 28 F -0.171 7.171 29 F -0.160 7.160 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.180 0.820 37 H 0.113 0.887 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.752 -23.028 -9.933 26.562 hybrid contribution -0.148 1.782 0.655 1.904 sum 8.603 -21.246 -9.278 24.729 Atomic orbital electron populations 1.69822 1.06483 1.25716 1.59481 1.25504 0.96381 1.00893 1.03805 0.85162 0.78191 0.80232 0.76764 1.19241 1.22400 1.21339 1.19493 0.90952 0.85637 1.41060 0.91661 1.42444 1.05392 1.00916 1.89152 1.21195 0.93755 0.84941 0.98102 1.21677 0.97808 0.93159 0.99681 0.88373 1.21595 0.92173 1.03616 0.82138 1.47871 1.43426 1.23468 1.17603 1.15132 0.80591 0.82013 0.81220 1.90930 1.43948 1.29330 1.80186 1.20550 1.01704 1.05868 0.97967 1.22195 0.92817 0.95099 0.93309 1.19296 0.88260 1.09110 0.93194 1.23260 0.93356 0.96763 1.04159 1.23236 0.98058 0.94409 1.04667 1.21975 0.93671 0.86919 0.98234 1.22089 0.97679 1.05310 0.92131 1.22502 0.98578 1.01374 0.90703 0.82254 1.20781 0.79117 0.73114 0.87027 1.93128 1.63616 1.63583 1.96722 1.93172 1.72378 1.94520 1.57076 1.93172 1.85709 1.40343 1.96749 0.94182 0.79442 0.94932 0.96988 0.91638 0.86974 0.82023 0.88672 0.84260 0.84929 0.90244 0.88603 0.86573 0.91923 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.58 13.06 21.65 0.28 -63.30 16 2 C -0.07 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.97 50.10 29.55 68.60 2.03 52.13 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 6 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 7 C -0.24 -14.59 9.99 84.03 0.84 -13.75 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -40.27 5.26 -343.45 -1.81 -42.08 16 10 C 0.15 6.14 4.53 86.38 0.39 6.53 16 11 C -0.10 -3.12 2.11 -10.71 -0.02 -3.15 16 12 H 0.10 3.00 7.61 -2.39 -0.02 2.98 16 13 C 0.13 3.94 5.73 86.36 0.49 4.43 16 14 N -0.59 -17.58 2.39 -827.87 -1.98 -19.57 16 15 C 0.62 24.24 7.55 85.49 0.65 24.89 16 16 O -0.56 -29.12 16.50 -4.05 -0.07 -29.19 16 17 C -0.26 -8.41 11.58 30.00 0.35 -8.06 16 18 C -0.03 -0.81 13.42 31.11 0.42 -0.39 16 19 C -0.08 -1.22 6.21 -12.60 -0.08 -1.30 16 20 C -0.14 -1.42 10.21 30.62 0.31 -1.11 16 21 C -0.17 -2.27 10.21 30.62 0.31 -1.96 16 22 C 0.11 2.03 6.33 86.36 0.55 2.57 16 23 C -0.13 -2.39 4.75 30.67 0.15 -2.25 16 24 C -0.11 -2.25 2.02 -10.77 -0.02 -2.27 16 25 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 26 C 0.45 10.84 2.59 71.98 0.19 11.03 16 27 F -0.19 -5.67 13.37 44.97 0.60 -5.07 16 28 F -0.19 -5.17 16.52 44.97 0.74 -4.43 16 29 F -0.18 -3.65 17.03 44.97 0.77 -2.88 16 30 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.37 21.69 6.59 -92.71 -0.61 21.08 16 32 H 0.03 1.42 5.41 -2.38 -0.01 1.41 16 33 H 0.01 0.54 6.00 -2.39 -0.01 0.53 16 34 H 0.07 2.80 5.67 -2.39 -0.01 2.78 16 35 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.14 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.10 1.64 6.32 -2.39 -0.02 1.62 16 42 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.52 5.92 -2.39 -0.01 1.51 16 44 H 0.13 1.34 7.95 -2.39 -0.02 1.32 16 Total: -1.00 -86.65 370.49 6.00 -80.64 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.45 Total: 22.63 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 4.98 Total: 11.11 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -3.51 Total: -124.95 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.07 Total: -29.19 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 2.11 Total: -12.38 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.03 Total: 52.13 kcal Total: -86.65 6.00 -80.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316726585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.752 kcal (2) G-P(sol) polarization free energy of solvation -86.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds