Wall clock time and date at job start Wed Apr 1 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29450 * 118.17357 * 2 1 4 4 C 1.49977 * 124.60894 * 180.81373 * 3 2 1 5 5 C 1.53103 * 110.24922 * 341.12280 * 4 3 2 6 6 N 1.46908 * 108.11154 * 45.49391 * 5 4 3 7 7 C 1.34776 * 121.45594 * 118.09566 * 6 5 4 8 8 O 1.21345 * 120.00076 * 353.06296 * 7 6 5 9 9 C 1.49447 * 119.99998 * 173.06786 * 7 6 5 10 10 O 1.21355 * 120.00177 * 353.86762 * 9 7 6 11 11 N 1.34770 * 120.00256 * 173.87398 * 9 7 6 12 12 C 1.46508 * 120.00146 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.46829 * 179.97438 * 12 11 9 14 14 C 1.38308 * 119.93067 * 269.72167 * 13 12 11 15 15 C 1.38099 * 120.06909 * 179.72505 * 14 13 12 16 16 C 1.38881 * 119.93001 * 0.57679 * 15 14 13 17 17 O 1.35752 * 120.07055 * 179.68221 * 16 15 14 18 18 C 1.34829 * 117.00017 * 187.43279 * 17 16 15 19 19 H 1.08003 * 120.00348 * 354.75793 * 18 17 16 20 20 C 1.38650 * 120.00088 * 174.75936 * 18 17 16 21 21 N 1.31556 * 120.00158 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46966 * 60.00133 * 22 20 18 24 24 H 1.48501 * 109.47460 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46977 * 300.00205 * 22 20 18 26 26 C 1.38881 * 119.86190 * 359.70022 * 16 15 14 27 27 C 1.38101 * 119.92990 * 0.02562 * 26 16 15 28 28 C 1.47006 * 117.17052 * 298.14889 * 6 5 4 29 29 H 1.09003 * 109.47046 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47472 * 119.99755 * 1 2 3 31 31 H 1.08997 * 109.47026 * 240.00094 * 1 2 3 32 32 H 1.07999 * 117.69868 * 0.84051 * 3 2 1 33 33 H 1.08999 * 109.31021 * 101.31512 * 4 3 2 34 34 H 1.08994 * 109.31435 * 220.93093 * 4 3 2 35 35 H 1.09001 * 109.77216 * 164.96592 * 5 4 3 36 36 H 1.08996 * 109.78013 * 285.76492 * 5 4 3 37 37 H 0.97002 * 120.00005 * 359.97438 * 11 9 7 38 38 H 1.08993 * 109.46953 * 299.99555 * 12 11 9 39 39 H 1.08997 * 109.46805 * 60.00000 * 12 11 9 40 40 H 1.07997 * 119.96208 * 359.97438 * 14 13 12 41 41 H 1.08000 * 120.03545 * 180.27577 * 15 14 13 42 42 H 0.96998 * 120.00404 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.03646 * 179.97438 * 26 16 15 44 44 H 1.08000 * 119.96394 * 180.02562 * 27 26 16 45 45 H 1.09002 * 109.52105 * 283.02591 * 28 6 5 46 46 H 1.08992 * 109.57832 * 162.87011 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1411 0.0000 4 6 3.6084 1.3093 -0.0175 5 6 4.2930 0.0150 0.4300 6 7 3.6463 -1.1071 -0.2635 7 6 4.3335 -1.9026 -1.1069 8 8 5.4769 -1.6266 -1.4053 9 6 3.6873 -3.1246 -1.6748 10 8 2.5862 -3.4621 -1.2924 11 7 4.3275 -3.8520 -2.6115 12 6 3.6942 -5.0503 -3.1678 13 6 4.6108 -5.6753 -4.1877 14 6 4.5230 -5.3002 -5.5161 15 6 5.3654 -5.8669 -6.4522 16 6 6.2933 -6.8231 -6.0606 17 8 7.1183 -7.3868 -6.9796 18 6 7.8861 -8.4143 -6.5643 19 1 7.8903 -8.6987 -5.5224 20 6 8.6703 -9.1060 -7.4747 21 7 8.6657 -8.7594 -8.7438 22 14 9.7346 -10.5292 -6.8992 23 1 8.8740 -11.5789 -6.2968 24 1 10.4710 -11.0967 -8.0573 25 1 10.7053 -10.0432 -5.8859 26 6 6.3751 -7.2019 -4.7270 27 6 5.5337 -6.6273 -3.7947 28 6 2.2167 -1.3252 0.0004 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3633 -0.5138 0.8900 32 1 1.5124 2.0351 0.0140 33 1 3.9313 1.5570 -1.0287 34 1 3.8880 2.1174 0.6583 35 1 5.3501 0.0468 0.1662 36 1 4.1847 -0.1059 1.5078 37 1 5.2076 -3.5822 -2.9174 38 1 3.5008 -5.7640 -2.3670 39 1 2.7535 -4.7758 -3.6450 40 1 3.7977 -4.5604 -5.8208 41 1 5.2994 -5.5703 -7.4886 42 1 9.2140 -9.2435 -9.3808 43 1 7.0953 -7.9456 -4.4194 44 1 5.5972 -6.9212 -2.7573 45 1 2.0946 -1.8035 0.9722 46 1 1.7954 -1.9642 -0.7755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323134530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:22 Heat of formation + Delta-G solvation = -44.486584 kcal Electronic energy + Delta-G solvation = -28568.518335 eV Core-core repulsion = 24424.646767 eV Total energy + Delta-G solvation = -4143.871568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10952 -39.38908 -38.88791 -37.97794 -36.94161 -34.85065 -33.94458 -32.40396 -32.31890 -30.34183 -30.11407 -27.44436 -27.07160 -25.97227 -25.09268 -23.95969 -22.35228 -22.08904 -20.72835 -20.22799 -18.74840 -18.09795 -17.59347 -17.19543 -17.02214 -16.29205 -15.83017 -15.53460 -15.14812 -14.81614 -14.65159 -14.58482 -14.45153 -14.11801 -13.99936 -13.91656 -13.66230 -13.47665 -13.08063 -12.93123 -12.83733 -12.80020 -12.39835 -12.31869 -12.14493 -12.01467 -11.71392 -11.41356 -11.34795 -11.12147 -10.97184 -10.84413 -10.74621 -10.51204 -9.61297 -9.46240 -9.26930 -9.17156 -8.98298 -8.91576 -8.31355 -7.36548 -6.54080 -4.13055 1.27402 1.81350 1.87556 2.10836 2.33228 3.04363 3.08728 3.09276 3.12675 3.37933 3.89652 4.19758 4.30886 4.47698 4.51761 4.63931 4.79001 4.99320 5.07202 5.08385 5.09552 5.18130 5.18718 5.27329 5.32350 5.39128 5.46697 5.51710 5.59830 5.61648 5.65470 5.73449 5.77109 5.95519 6.09598 6.11156 6.25927 6.30958 6.55112 6.56650 6.76767 6.82565 6.92613 7.08938 7.18887 7.23573 7.32857 7.57924 7.68319 7.87840 7.90211 8.90910 9.58346 10.63158 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025734 B = 0.001777 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.783265 B =15750.432489 C =16045.687844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.141 4.141 3 C -0.158 4.158 4 C -0.104 4.104 5 C 0.107 3.893 6 N -0.587 5.587 7 C 0.511 3.489 8 O -0.517 6.517 9 C 0.504 3.496 10 O -0.524 6.524 11 N -0.685 5.685 12 C 0.177 3.823 13 C -0.221 4.221 14 C -0.052 4.052 15 C -0.195 4.195 16 C 0.162 3.838 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.237 4.237 27 C -0.048 4.048 28 C 0.123 3.877 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.415 0.585 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.272 0.728 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.003 16.223 17.862 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.141 4.141 3 C -0.177 4.177 4 C -0.141 4.141 5 C -0.015 4.015 6 N -0.321 5.321 7 C 0.294 3.706 8 O -0.393 6.393 9 C 0.285 3.715 10 O -0.403 6.403 11 N -0.337 5.337 12 C 0.056 3.944 13 C -0.222 4.222 14 C -0.071 4.071 15 C -0.214 4.214 16 C 0.107 3.893 17 O -0.074 6.074 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.492 5.492 22 Si 0.767 3.233 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.256 4.256 27 C -0.067 4.067 28 C 0.002 3.998 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.251 0.749 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.082 0.918 43 H 0.146 0.854 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.978 16.053 17.464 27.040 hybrid contribution 0.920 -0.496 0.244 1.073 sum -12.058 15.557 17.708 26.476 Atomic orbital electron populations 1.20870 0.91347 1.02498 1.02605 1.21282 0.96512 0.94934 1.01400 1.21818 0.95963 0.97289 1.02589 1.20754 0.93077 0.97582 1.02715 1.21727 0.98714 0.84677 0.96431 1.47858 1.11081 1.29734 1.43424 1.20218 0.86294 0.84349 0.79729 1.90776 1.17756 1.72502 1.58237 1.20036 0.85854 0.84664 0.80988 1.90586 1.19486 1.69959 1.60231 1.46287 1.22205 1.26622 1.38568 1.20158 0.94648 0.84660 0.94958 1.19128 1.04105 1.05093 0.93876 1.20528 0.97127 0.97449 0.91977 1.20218 0.99100 1.02213 0.99889 1.19450 0.88997 0.91870 0.88964 1.83973 1.45661 1.43252 1.34524 1.21316 1.22069 1.08082 0.95513 0.88935 1.25325 0.97662 0.98638 0.94822 1.70023 1.37912 1.39534 1.01774 0.85757 0.79385 0.79831 0.78349 1.19402 1.20194 1.19407 1.21158 1.04786 1.06565 0.93081 1.20642 0.93529 0.94389 0.98117 1.21272 0.78349 0.95303 1.04897 0.91893 0.91227 0.91401 0.87604 0.90293 0.89705 0.88408 0.90507 0.74860 0.90827 0.90801 0.86891 0.86284 0.91788 0.85355 0.87305 0.90164 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.00 36.00 0.36 -0.35 16 2 C -0.14 -1.11 5.92 -100.82 -0.60 -1.71 16 3 C -0.16 -1.17 9.41 -35.95 -0.34 -1.51 16 4 C -0.10 -0.73 6.29 -28.18 -0.18 -0.91 16 5 C 0.11 0.89 6.47 -3.77 -0.02 0.87 16 6 N -0.59 -6.17 2.96 -174.99 -0.52 -6.69 16 7 C 0.51 6.52 7.77 -11.59 -0.09 6.43 16 8 O -0.52 -7.69 16.00 5.50 0.09 -7.60 16 9 C 0.50 6.53 7.74 -11.59 -0.09 6.44 16 10 O -0.52 -7.16 13.28 5.49 0.07 -7.08 16 11 N -0.68 -8.82 5.54 -61.91 -0.34 -9.16 16 12 C 0.18 2.32 5.80 -5.19 -0.03 2.29 16 13 C -0.22 -3.45 5.25 -104.57 -0.55 -4.00 16 14 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 15 C -0.19 -3.90 9.99 -39.39 -0.39 -4.29 16 16 C 0.16 3.75 6.64 -39.11 -0.26 3.49 16 17 O -0.17 -4.75 9.76 0.05 0.00 -4.75 16 18 C -0.39 -10.69 9.49 30.88 0.29 -10.39 16 19 H 0.09 2.31 5.22 -52.48 -0.27 2.03 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 22 Si 0.94 20.02 29.55 -169.99 -5.02 14.99 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.24 -4.87 9.16 -39.39 -0.36 -5.23 16 27 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 28 C 0.12 1.14 5.65 -5.10 -0.03 1.11 16 29 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 0.65 7.56 -52.49 -0.40 0.26 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.89 7.08 -51.93 -0.37 0.52 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.41 5.44 7.95 -40.82 -0.32 5.11 16 38 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 43 H 0.13 2.66 5.67 -52.49 -0.30 2.36 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.14 1.45 4.90 -52.28 -0.26 1.20 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -30.80 385.98 -8.39 -39.19 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.09 Total: 8.35 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.15 Total: -9.22 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.10 Total: -39.69 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.16 Total: -19.43 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.80 -8.39 -39.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323134530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.299 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds