Wall clock time and date at job start Wed Apr 1 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29450 * 118.17357 * 2 1 4 4 C 1.49977 * 124.60894 * 180.81373 * 3 2 1 5 5 C 1.53103 * 110.24922 * 341.12280 * 4 3 2 6 6 N 1.46908 * 108.11154 * 45.49391 * 5 4 3 7 7 C 1.34776 * 121.45594 * 118.09566 * 6 5 4 8 8 O 1.21345 * 120.00076 * 353.06296 * 7 6 5 9 9 C 1.49447 * 119.99998 * 173.06786 * 7 6 5 10 10 O 1.21355 * 120.00177 * 353.86762 * 9 7 6 11 11 N 1.34770 * 120.00256 * 173.87398 * 9 7 6 12 12 C 1.46508 * 120.00146 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.46829 * 179.97438 * 12 11 9 14 14 C 1.38308 * 119.93067 * 269.72167 * 13 12 11 15 15 C 1.38099 * 120.06909 * 179.72505 * 14 13 12 16 16 C 1.38881 * 119.93001 * 0.57679 * 15 14 13 17 17 O 1.35752 * 120.07055 * 179.68221 * 16 15 14 18 18 C 1.34829 * 117.00017 * 187.43279 * 17 16 15 19 19 H 1.08003 * 120.00348 * 354.75793 * 18 17 16 20 20 C 1.38650 * 120.00088 * 174.75936 * 18 17 16 21 21 N 1.31556 * 120.00158 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46966 * 60.00133 * 22 20 18 24 24 H 1.48501 * 109.47460 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46977 * 300.00205 * 22 20 18 26 26 C 1.38881 * 119.86190 * 359.70022 * 16 15 14 27 27 C 1.38101 * 119.92990 * 0.02562 * 26 16 15 28 28 C 1.47006 * 117.17052 * 298.14889 * 6 5 4 29 29 H 1.09003 * 109.47046 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47472 * 119.99755 * 1 2 3 31 31 H 1.08997 * 109.47026 * 240.00094 * 1 2 3 32 32 H 1.07999 * 117.69868 * 0.84051 * 3 2 1 33 33 H 1.08999 * 109.31021 * 101.31512 * 4 3 2 34 34 H 1.08994 * 109.31435 * 220.93093 * 4 3 2 35 35 H 1.09001 * 109.77216 * 164.96592 * 5 4 3 36 36 H 1.08996 * 109.78013 * 285.76492 * 5 4 3 37 37 H 0.97002 * 120.00005 * 359.97438 * 11 9 7 38 38 H 1.08993 * 109.46953 * 299.99555 * 12 11 9 39 39 H 1.08997 * 109.46805 * 60.00000 * 12 11 9 40 40 H 1.07997 * 119.96208 * 359.97438 * 14 13 12 41 41 H 1.08000 * 120.03545 * 180.27577 * 15 14 13 42 42 H 0.96998 * 120.00404 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.03646 * 179.97438 * 26 16 15 44 44 H 1.08000 * 119.96394 * 180.02562 * 27 26 16 45 45 H 1.09002 * 109.52105 * 283.02591 * 28 6 5 46 46 H 1.08992 * 109.57832 * 162.87011 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1411 0.0000 4 6 3.6084 1.3093 -0.0175 5 6 4.2930 0.0150 0.4300 6 7 3.6463 -1.1071 -0.2635 7 6 4.3335 -1.9026 -1.1069 8 8 5.4769 -1.6266 -1.4053 9 6 3.6873 -3.1246 -1.6748 10 8 2.5862 -3.4621 -1.2924 11 7 4.3275 -3.8520 -2.6115 12 6 3.6942 -5.0503 -3.1678 13 6 4.6108 -5.6753 -4.1877 14 6 4.5230 -5.3002 -5.5161 15 6 5.3654 -5.8669 -6.4522 16 6 6.2933 -6.8231 -6.0606 17 8 7.1183 -7.3868 -6.9796 18 6 7.8861 -8.4143 -6.5643 19 1 7.8903 -8.6987 -5.5224 20 6 8.6703 -9.1060 -7.4747 21 7 8.6657 -8.7594 -8.7438 22 14 9.7346 -10.5292 -6.8992 23 1 8.8740 -11.5789 -6.2968 24 1 10.4710 -11.0967 -8.0573 25 1 10.7053 -10.0432 -5.8859 26 6 6.3751 -7.2019 -4.7270 27 6 5.5337 -6.6273 -3.7947 28 6 2.2167 -1.3252 0.0004 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3633 -0.5138 0.8900 32 1 1.5124 2.0351 0.0140 33 1 3.9313 1.5570 -1.0287 34 1 3.8880 2.1174 0.6583 35 1 5.3501 0.0468 0.1662 36 1 4.1847 -0.1059 1.5078 37 1 5.2076 -3.5822 -2.9174 38 1 3.5008 -5.7640 -2.3670 39 1 2.7535 -4.7758 -3.6450 40 1 3.7977 -4.5604 -5.8208 41 1 5.2994 -5.5703 -7.4886 42 1 9.2140 -9.2435 -9.3808 43 1 7.0953 -7.9456 -4.4194 44 1 5.5972 -6.9212 -2.7573 45 1 2.0946 -1.8035 0.9722 46 1 1.7954 -1.9642 -0.7755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323134530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:22 Heat of formation + Delta-G solvation = -63.833726 kcal Electronic energy + Delta-G solvation = -28569.357290 eV Core-core repulsion = 24424.646767 eV Total energy + Delta-G solvation = -4144.710523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05410 -40.87361 -39.98261 -38.85046 -38.51469 -35.97595 -34.73951 -34.27946 -32.97769 -31.86771 -31.54101 -28.18688 -28.02015 -27.45394 -26.43060 -24.81985 -23.66727 -23.21364 -22.15606 -21.19955 -19.90567 -19.58954 -18.84925 -18.30303 -18.14119 -17.25845 -16.83076 -16.59725 -16.44823 -16.23048 -15.83320 -15.65244 -15.51966 -15.38032 -15.14530 -15.06446 -14.71971 -14.64024 -14.40088 -14.20895 -13.78474 -13.65478 -13.57599 -13.33360 -13.06152 -12.96686 -12.88434 -12.66317 -12.52599 -12.39160 -12.30349 -12.21341 -12.14590 -11.71528 -11.22353 -10.83264 -10.55743 -10.28857 -9.92937 -9.82365 -9.65801 -9.03520 -8.48757 -6.17262 0.27567 0.47237 0.56857 1.23541 1.31321 1.35336 1.46129 1.51250 2.04918 2.16817 2.40344 2.82682 3.12168 3.31681 3.48097 3.70011 3.81530 3.88825 4.01092 4.03760 4.15717 4.18557 4.42797 4.43001 4.53380 4.55324 4.58479 4.66961 4.77611 4.78374 4.78907 4.89403 4.94154 5.01901 5.02269 5.12433 5.13073 5.21864 5.24876 5.30192 5.49714 5.54262 5.67998 5.71539 5.89691 6.00418 6.03318 6.14368 6.20558 6.59780 6.86567 6.95706 7.74547 8.73685 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025734 B = 0.001777 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.783265 B =15750.432489 C =16045.687844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.152 4.152 3 C -0.159 4.159 4 C -0.101 4.101 5 C 0.101 3.899 6 N -0.582 5.582 7 C 0.508 3.492 8 O -0.546 6.546 9 C 0.508 3.492 10 O -0.529 6.529 11 N -0.685 5.685 12 C 0.182 3.818 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.206 4.206 16 C 0.123 3.877 17 O -0.229 6.229 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.018 2.982 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.258 1.258 26 C -0.245 4.245 27 C -0.045 4.045 28 C 0.122 3.878 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.414 0.586 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.115 0.885 42 H 0.273 0.727 43 H 0.121 0.879 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.020 17.566 21.113 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.152 4.152 3 C -0.177 4.177 4 C -0.139 4.139 5 C -0.021 4.021 6 N -0.315 5.315 7 C 0.290 3.710 8 O -0.424 6.424 9 C 0.289 3.711 10 O -0.408 6.408 11 N -0.337 5.337 12 C 0.061 3.939 13 C -0.189 4.189 14 C -0.061 4.061 15 C -0.225 4.225 16 C 0.072 3.928 17 O -0.135 6.135 18 C -0.491 4.491 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.182 1.182 26 C -0.264 4.264 27 C -0.063 4.063 28 C 0.001 3.999 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.168 0.832 41 H 0.134 0.866 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.159 0.841 45 H 0.106 0.894 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.063 17.443 20.783 31.034 hybrid contribution 1.231 -0.622 -0.503 1.468 sum -13.833 16.821 20.280 29.759 Atomic orbital electron populations 1.20877 0.90096 1.03314 1.02804 1.21355 0.97418 0.94272 1.02192 1.22020 0.96185 0.97763 1.01759 1.20772 0.92892 0.97483 1.02731 1.21940 0.98221 0.84624 0.97279 1.48019 1.11630 1.29486 1.42326 1.20186 0.86054 0.84583 0.80142 1.90767 1.18843 1.73259 1.59570 1.20035 0.85641 0.84667 0.80762 1.90603 1.19647 1.70124 1.60400 1.46136 1.22210 1.26545 1.38771 1.20154 0.94206 0.84941 0.94606 1.19488 1.02386 1.02842 0.94211 1.20920 0.96399 0.97082 0.91654 1.20470 0.99299 1.01965 1.00807 1.20021 0.89916 0.93093 0.89763 1.83944 1.48086 1.44948 1.36500 1.21794 1.22428 1.08578 0.96251 0.87924 1.26591 0.99047 1.01530 0.94810 1.70171 1.40207 1.41875 1.03333 0.84657 0.77489 0.76069 0.78087 1.18112 1.19697 1.18192 1.21260 1.05541 1.06848 0.92796 1.20981 0.92468 0.93870 0.98981 1.21292 0.77553 0.96246 1.04773 0.90790 0.91574 0.90650 0.86045 0.91305 0.87250 0.89409 0.88645 0.74903 0.89523 0.89176 0.83222 0.86643 0.91784 0.86160 0.84083 0.89355 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.00 71.24 0.71 -0.39 16 2 C -0.15 -2.02 5.92 -15.02 -0.09 -2.11 16 3 C -0.16 -1.92 9.41 27.00 0.25 -1.66 16 4 C -0.10 -1.18 6.29 29.66 0.19 -1.00 16 5 C 0.10 1.49 6.47 86.34 0.56 2.05 16 6 N -0.58 -11.17 2.96 -825.90 -2.45 -13.61 16 7 C 0.51 12.17 7.77 87.27 0.68 12.85 16 8 O -0.55 -15.72 16.00 -3.23 -0.05 -15.78 16 9 C 0.51 11.95 7.74 87.27 0.68 12.63 16 10 O -0.53 -13.02 13.28 -3.26 -0.04 -13.06 16 11 N -0.68 -15.61 5.54 -468.14 -2.59 -18.20 16 12 C 0.18 4.03 5.80 85.63 0.50 4.53 16 13 C -0.19 -5.29 5.25 -19.83 -0.10 -5.40 16 14 C -0.04 -1.29 9.69 22.25 0.22 -1.08 16 15 C -0.21 -8.33 9.99 22.39 0.22 -8.10 16 16 C 0.12 5.91 6.64 22.58 0.15 6.06 16 17 O -0.23 -13.49 9.76 -22.74 -0.22 -13.72 16 18 C -0.41 -23.71 9.49 67.92 0.64 -23.07 16 19 H 0.10 5.35 5.22 -2.91 -0.02 5.33 16 20 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 21 N -0.92 -55.77 13.67 21.61 0.30 -55.48 16 22 Si 1.02 42.27 29.55 68.60 2.03 44.30 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 26 C -0.25 -10.16 9.16 22.39 0.21 -9.95 16 27 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 28 C 0.12 2.01 5.65 85.42 0.48 2.49 16 29 H 0.07 0.55 7.56 -2.39 -0.02 0.53 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.12 1.10 7.56 -2.91 -0.02 1.07 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 1.50 7.08 -2.39 -0.02 1.48 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 9.85 7.95 -92.71 -0.74 9.12 16 38 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 39 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 40 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.12 5.10 5.67 -2.91 -0.02 5.08 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.12 2.38 4.90 -7.87 -0.04 2.34 16 Total: -1.00 -71.71 385.98 3.20 -68.51 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.26 Total: 31.16 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 5.97 Total: -14.12 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -4.74 Total: -87.29 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.32 Total: -42.56 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -71.71 3.20 -68.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323134530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.680 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds