Wall clock time and date at job start Wed Apr 1 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48493 * 109.47437 * 265.03580 * 3 2 1 5 5 H 1.48499 * 109.47018 * 25.03659 * 3 2 1 6 6 H 1.48501 * 109.47004 * 145.03358 * 3 2 1 7 7 C 1.38812 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99855 * 346.14267 * 7 2 1 9 9 N 1.36941 * 120.00082 * 166.14814 * 7 2 1 10 10 C 1.47428 * 125.64623 * 142.86290 * 9 7 2 11 11 C 1.54909 * 104.82852 * 155.91443 * 10 9 7 12 12 C 1.55159 * 101.58353 * 37.00960 * 11 10 9 13 13 O 1.42902 * 110.72146 * 83.03176 * 12 11 10 14 14 C 1.53001 * 110.72214 * 206.13475 * 12 11 10 15 15 N 1.46495 * 109.47244 * 180.02562 * 14 12 11 16 16 C 1.34776 * 120.00195 * 180.02562 * 15 14 12 17 17 O 1.21628 * 119.99600 * 5.20854 * 16 15 14 18 18 C 1.47164 * 120.00161 * 185.21887 * 16 15 14 19 19 C 1.38406 * 126.88479 * 5.11159 * 18 16 15 20 20 C 1.39670 * 105.35810 * 180.02562 * 19 18 16 21 21 N 1.30865 * 107.86391 * 359.74628 * 20 19 18 22 22 N 1.28446 * 110.92183 * 0.43497 * 21 20 19 23 23 C 1.46499 * 125.18556 * 179.82179 * 22 21 20 24 24 C 1.53002 * 109.47293 * 271.23597 * 23 22 21 25 25 F 1.39902 * 109.46983 * 295.00524 * 24 23 22 26 26 F 1.39899 * 109.47545 * 175.00336 * 24 23 22 27 27 C 1.47023 * 125.64664 * 322.91477 * 9 7 2 28 28 H 0.97000 * 119.99910 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.36489 * 37.07585 * 10 9 7 30 30 H 1.08996 * 110.45840 * 274.80103 * 10 9 7 31 31 H 1.08992 * 111.00674 * 278.93664 * 11 10 9 32 32 H 1.09005 * 111.03388 * 155.09336 * 11 10 9 33 33 H 0.96699 * 114.00082 * 182.43988 * 13 12 11 34 34 H 1.08998 * 109.47290 * 59.99772 * 14 12 11 35 35 H 1.09000 * 109.46655 * 299.99333 * 14 12 11 36 36 H 0.97005 * 119.99887 * 359.97438 * 15 14 12 37 37 H 1.07998 * 127.31868 * 0.02562 * 19 18 16 38 38 H 1.08004 * 126.06703 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47119 * 151.23619 * 23 22 21 40 40 H 1.08994 * 109.47393 * 31.23270 * 23 22 21 41 41 H 1.09001 * 109.47213 * 54.99618 * 24 23 22 42 42 H 1.08998 * 109.87992 * 61.59739 * 27 9 7 43 43 H 1.08997 * 109.88124 * 300.42762 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6026 1.9859 -1.3947 5 1 1.3990 2.6807 0.5925 6 1 3.4913 1.4728 0.8024 7 6 2.0103 -1.2021 -0.0005 8 1 1.4939 -2.1239 0.2231 9 7 3.3499 -1.2192 -0.2845 10 6 4.3523 -2.0918 0.3536 11 6 5.5045 -2.1915 -0.6770 12 6 5.5206 -0.7562 -1.2662 13 8 6.2696 0.1261 -0.4280 14 6 6.0872 -0.7607 -2.6875 15 7 6.0904 0.6054 -3.2163 16 6 6.5489 0.8453 -4.4607 17 8 6.8713 -0.0816 -5.1792 18 6 6.6598 2.2288 -4.9501 19 6 6.4293 3.3865 -4.2276 20 6 6.6624 4.4335 -5.1222 21 7 7.0068 3.9104 -6.2713 22 7 7.0103 2.6275 -6.2087 23 6 7.3451 1.7292 -7.3164 24 6 6.0812 1.4177 -8.1204 25 9 5.1846 0.7010 -7.3207 26 9 6.4188 0.6535 -9.2426 27 6 4.0266 -0.3696 -1.2753 28 1 -0.4850 0.8401 0.0004 29 1 3.9293 -3.0777 0.5463 30 1 4.7106 -1.6455 1.2812 31 1 5.2767 -2.9276 -1.4478 32 1 6.4498 -2.4227 -0.1859 33 1 6.2793 1.0439 -0.7323 34 1 5.4694 -1.3953 -3.3229 35 1 7.1068 -1.1458 -2.6708 36 1 5.7618 1.3373 -2.6710 37 1 6.1324 3.4639 -3.1921 38 1 6.5773 5.4877 -4.9034 39 1 7.7610 0.8029 -6.9200 40 1 8.0787 2.2089 -7.9642 41 1 5.6163 2.3496 -8.4420 42 1 3.9135 0.6797 -1.0028 43 1 3.6042 -0.5455 -2.2646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325095171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:17 Heat of formation + Delta-G solvation = -96.513612 kcal Electronic energy + Delta-G solvation = -31240.105466 eV Core-core repulsion = 26572.041058 eV Total energy + Delta-G solvation = -4668.064408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.15787 -48.18675 -43.66705 -41.10353 -39.88760 -36.94055 -35.74803 -34.93653 -34.34653 -32.48773 -31.54841 -30.11062 -29.95142 -27.63999 -25.74306 -24.94071 -23.99257 -22.67044 -22.07331 -21.65910 -21.18784 -19.85696 -19.09891 -18.65041 -18.52332 -18.26820 -17.91066 -17.30017 -17.08623 -16.62745 -16.37695 -15.93718 -15.81225 -15.61125 -15.40797 -15.18208 -15.09185 -14.90753 -14.55818 -14.52831 -14.46149 -14.39494 -13.94685 -13.85802 -13.60571 -13.38399 -13.26306 -12.96458 -12.42798 -12.41575 -12.23423 -12.09955 -11.98983 -11.89233 -11.62800 -11.27041 -10.99367 -10.75966 -10.52475 -10.26878 -10.14071 -8.82931 -8.23472 -5.68762 0.02317 1.01891 1.23361 1.38381 1.50566 1.51078 1.90294 2.02868 2.38744 2.58049 2.99042 3.04403 3.05105 3.18839 3.21082 3.35823 3.57850 3.58791 3.66961 3.69272 3.78293 4.01906 4.17287 4.28777 4.39195 4.42155 4.48768 4.55620 4.68441 4.76782 4.78955 4.82340 4.99137 5.02389 5.15568 5.32037 5.35980 5.54274 5.81033 6.10602 6.15658 6.63703 6.76117 6.83207 6.92920 7.46174 8.10946 8.96580 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.003328 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.723452 B = 8410.448307 C = 8735.808866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.031 4.031 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.308 1.308 6 H -0.258 1.258 7 C -0.249 4.249 8 H 0.045 0.955 9 N -0.624 5.624 10 C 0.124 3.876 11 C -0.103 4.103 12 C 0.122 3.878 13 O -0.547 6.547 14 C 0.118 3.882 15 N -0.706 5.706 16 C 0.592 3.408 17 O -0.559 6.559 18 C -0.052 4.052 19 C -0.175 4.175 20 C 0.010 3.990 21 N -0.289 5.289 22 N -0.272 5.272 23 C 0.069 3.931 24 C 0.254 3.746 25 F -0.214 7.214 26 F -0.197 7.197 27 C 0.094 3.906 28 H 0.265 0.735 29 H 0.048 0.952 30 H 0.027 0.973 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.383 0.617 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.409 0.591 37 H 0.189 0.811 38 H 0.224 0.776 39 H 0.129 0.871 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.024 0.976 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.359 8.982 -13.270 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.226 4.226 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.237 1.237 6 H -0.183 1.183 7 C -0.378 4.378 8 H 0.063 0.937 9 N -0.351 5.351 10 C 0.000 4.000 11 C -0.141 4.141 12 C 0.080 3.920 13 O -0.354 6.354 14 C -0.006 4.006 15 N -0.359 5.359 16 C 0.378 3.622 17 O -0.438 6.438 18 C -0.179 4.179 19 C -0.203 4.203 20 C -0.166 4.166 21 N -0.120 5.120 22 N -0.060 5.060 23 C -0.052 4.052 24 C 0.199 3.801 25 F -0.195 7.195 26 F -0.178 7.178 27 C -0.031 4.031 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.233 0.767 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.246 0.754 37 H 0.206 0.794 38 H 0.241 0.759 39 H 0.147 0.853 40 H 0.177 0.823 41 H 0.156 0.844 42 H 0.041 0.959 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.815 7.958 -14.615 26.649 hybrid contribution -1.161 1.053 0.863 1.789 sum 19.654 9.010 -13.751 25.623 Atomic orbital electron populations 1.69925 1.07656 1.27698 1.54826 1.26240 0.96019 1.01955 0.98433 0.85642 0.78132 0.78616 0.78761 1.18614 1.23670 1.18324 1.18489 0.82808 0.92840 1.43678 0.93686 1.44651 1.03294 1.45466 1.41711 1.21854 0.88992 0.94235 0.94968 1.22743 0.99630 0.92619 0.99149 1.22273 0.88088 0.92965 0.88665 1.86581 1.73252 1.22528 1.53009 1.21949 1.03098 0.82966 0.92595 1.45510 1.64078 1.11006 1.15273 1.17015 0.77138 0.86399 0.81660 1.90775 1.51149 1.45742 1.56103 1.21450 1.12643 0.95347 0.88494 1.22782 1.05118 0.89798 1.02638 1.24275 1.02040 1.02203 0.88115 1.73236 1.20730 0.91084 1.26900 1.45340 1.48420 1.04018 1.08217 1.23210 0.97561 0.96071 0.88382 1.22361 0.88896 0.90275 0.78560 1.93044 1.70217 1.81452 1.74809 1.93008 1.93068 1.78968 1.52741 1.22490 0.93038 0.94581 0.93015 0.92637 0.93316 0.95538 0.88301 0.87330 0.76747 0.90581 0.88432 0.75388 0.79374 0.75942 0.85335 0.82304 0.84423 0.95867 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.19 13.97 21.65 0.30 -59.89 16 2 C -0.03 -1.79 5.47 84.86 0.46 -1.33 16 3 Si 0.96 45.02 24.63 68.60 1.69 46.71 16 4 H -0.26 -10.97 6.86 99.48 0.68 -10.29 16 5 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.26 -11.56 7.06 99.48 0.70 -10.85 16 7 C -0.25 -14.40 10.53 84.03 0.88 -13.52 16 8 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 9 N -0.62 -29.29 2.95 -691.99 -2.04 -31.34 16 10 C 0.12 4.70 7.23 86.85 0.63 5.32 16 11 C -0.10 -2.86 6.26 31.99 0.20 -2.66 16 12 C 0.12 3.43 0.92 -9.60 -0.01 3.42 16 13 O -0.55 -14.25 13.09 -148.98 -1.95 -16.20 16 14 C 0.12 2.82 4.75 86.38 0.41 3.23 16 15 N -0.71 -15.57 5.18 -466.64 -2.42 -17.98 16 16 C 0.59 14.60 7.79 86.59 0.67 15.27 16 17 O -0.56 -16.55 13.92 -4.12 -0.06 -16.61 16 18 C -0.05 -1.11 6.96 40.79 0.28 -0.82 16 19 C -0.17 -2.76 10.50 22.66 0.24 -2.53 16 20 C 0.01 0.15 12.03 85.18 1.02 1.17 16 21 N -0.29 -5.25 11.90 -57.14 -0.68 -5.93 16 22 N -0.27 -5.33 3.33 -334.70 -1.12 -6.45 16 23 C 0.07 1.15 6.09 86.38 0.53 1.67 16 24 C 0.25 4.63 5.55 71.98 0.40 5.03 16 25 F -0.21 -5.80 16.60 44.97 0.75 -5.05 16 26 F -0.20 -3.82 17.34 44.97 0.78 -3.04 16 27 C 0.09 3.62 5.05 86.73 0.44 4.05 16 28 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 2.50 8.05 -2.39 -0.02 2.48 16 32 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.38 7.18 7.78 -74.06 -0.58 6.60 16 34 H 0.08 2.04 8.06 -2.39 -0.02 2.02 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.41 7.50 6.34 -92.70 -0.59 6.91 16 37 H 0.19 1.89 7.62 -2.91 -0.02 1.87 16 38 H 0.22 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.13 2.51 6.13 -2.39 -0.01 2.50 16 40 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.02 0.94 3.38 -2.39 -0.01 0.93 16 43 H 0.03 1.41 7.76 -2.39 -0.02 1.40 16 Total: -1.00 -79.17 361.46 1.31 -77.85 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.11 Total: 19.60 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 6.16 Total: 18.32 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -5.95 Total: -121.58 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -2.01 Total: -32.81 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 1.53 Total: -8.09 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.69 Total: 46.71 kcal Total: -79.17 1.31 -77.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325095171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.659 kcal (2) G-P(sol) polarization free energy of solvation -79.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds