Wall clock time and date at job start Wed Apr 1 2020 02:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00085 * 2 1 4 4 H 1.48501 * 109.47009 * 240.00366 * 3 2 1 5 5 H 1.48497 * 109.46811 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46832 * 120.00377 * 3 2 1 7 7 C 1.38818 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99600 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64929 * 359.95742 * 9 7 2 11 11 C 1.54910 * 104.83386 * 204.16579 * 10 9 7 12 12 C 1.55163 * 101.57891 * 322.99384 * 11 10 9 13 13 O 1.42906 * 110.86970 * 277.06391 * 12 11 10 14 14 C 1.53001 * 110.71962 * 153.86871 * 12 11 10 15 15 N 1.46499 * 109.47000 * 190.02038 * 14 12 11 16 16 C 1.34778 * 119.99800 * 179.97438 * 15 14 12 17 17 O 1.21622 * 119.99792 * 5.11610 * 16 15 14 18 18 C 1.47164 * 119.99776 * 185.11839 * 16 15 14 19 19 C 1.38400 * 126.88626 * 354.38169 * 18 16 15 20 20 C 1.39668 * 105.36129 * 179.97438 * 19 18 16 21 21 N 1.30860 * 107.86196 * 0.02562 * 20 19 18 22 22 N 1.28447 * 110.92578 * 0.02562 * 21 20 19 23 23 C 1.46498 * 125.18729 * 180.02562 * 22 21 20 24 24 C 1.53002 * 109.47232 * 274.11485 * 23 22 21 25 25 F 1.39899 * 109.46809 * 65.00028 * 24 23 22 26 26 F 1.39900 * 109.47372 * 185.00392 * 24 23 22 27 27 C 1.47023 * 125.64840 * 180.02562 * 9 7 2 28 28 H 0.96994 * 119.99871 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36362 * 323.00906 * 10 9 7 30 30 H 1.09000 * 110.36283 * 85.32448 * 10 9 7 31 31 H 1.08997 * 111.00506 * 204.92210 * 11 10 9 32 32 H 1.08995 * 111.00356 * 81.06494 * 11 10 9 33 33 H 0.96701 * 114.00065 * 177.45441 * 13 12 11 34 34 H 1.08998 * 109.47259 * 70.01588 * 14 12 11 35 35 H 1.09004 * 109.46764 * 310.02252 * 14 12 11 36 36 H 0.97001 * 120.00164 * 0.02562 * 15 14 12 37 37 H 1.08000 * 127.31657 * 359.70873 * 19 18 16 38 38 H 1.07999 * 126.07155 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47808 * 34.11742 * 23 22 21 40 40 H 1.09007 * 109.47123 * 154.11967 * 23 22 21 41 41 H 1.09007 * 109.47141 * 305.00709 * 24 23 22 42 42 H 1.09000 * 109.88284 * 59.48774 * 27 9 7 43 43 H 1.08992 * 109.88078 * 298.32145 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0009 11 6 -0.4011 -3.9322 0.6134 12 6 0.7785 -4.7524 0.0274 13 8 0.4751 -5.2090 -1.2924 14 6 1.1240 -5.9312 0.9396 15 7 2.3794 -6.5414 0.4946 16 6 2.8831 -7.6036 1.1537 17 8 2.2506 -8.1134 2.0588 18 6 4.1983 -8.1465 0.7781 19 6 4.9861 -7.7516 -0.2891 20 6 6.1266 -8.5552 -0.2244 21 7 5.9984 -9.3519 0.8058 22 7 4.8859 -9.1417 1.4126 23 6 4.4259 -9.8585 2.6045 24 6 3.7113 -11.1439 2.1826 25 9 4.6248 -12.0036 1.5632 26 9 3.1729 -11.7704 3.3117 27 6 1.9318 -3.7275 -0.0005 28 1 -0.4849 0.8400 0.0004 29 1 -0.5987 -1.7587 0.6167 30 1 -0.5282 -2.4871 -1.0172 31 1 -1.3587 -4.3328 0.2808 32 1 -0.3504 -3.8978 1.7016 33 1 1.1965 -5.6936 -1.7165 34 1 0.3248 -6.6710 0.8958 35 1 1.2354 -5.5770 1.9644 36 1 2.8484 -6.1804 -0.2739 37 1 4.7638 -6.9877 -1.0195 38 1 6.9651 -8.5250 -0.9044 39 1 5.2819 -10.1079 3.2316 40 1 3.7367 -9.2269 3.1650 41 1 2.9097 -10.9016 1.4846 42 1 2.5588 -3.8507 0.8825 43 1 2.5276 -3.8647 -0.9028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325095174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:20 Heat of formation + Delta-G solvation = -72.061932 kcal Electronic energy + Delta-G solvation = -30448.182267 eV Core-core repulsion = 25781.178164 eV Total energy + Delta-G solvation = -4667.004104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.41713 -47.41619 -42.95126 -39.96526 -38.52628 -35.35828 -34.81622 -34.11690 -32.24165 -31.43948 -29.63343 -29.38190 -28.23777 -25.94044 -24.51067 -23.95717 -22.97571 -21.82048 -20.72245 -20.11333 -20.00022 -18.90845 -17.98122 -17.73416 -17.22540 -17.02868 -16.50006 -16.31997 -15.81082 -15.58092 -15.06853 -14.81739 -14.70006 -14.43118 -14.27147 -14.05855 -13.92251 -13.79043 -13.75492 -13.36366 -13.27348 -13.05872 -12.67979 -12.41212 -12.18336 -11.70591 -11.67051 -11.20689 -11.11816 -10.92129 -10.88495 -10.59868 -10.36117 -10.23024 -9.99049 -9.79836 -9.71193 -9.54355 -9.50872 -9.28497 -8.71394 -6.93570 -5.72795 -3.15571 0.79990 1.73437 2.21108 2.74395 2.87196 3.25149 3.35680 3.39981 3.41531 3.71884 3.81641 4.15538 4.25233 4.35826 4.39854 4.40182 4.65875 4.74603 4.79974 4.94939 5.05853 5.19093 5.25427 5.34740 5.41470 5.52404 5.71735 5.83475 6.00960 6.07560 6.14246 6.20430 6.30012 6.40541 6.49171 6.51601 7.05196 7.48755 7.53399 7.59640 7.74665 7.77543 7.83249 8.27343 9.13359 9.73784 10.37365 11.30920 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.002400 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.008409 B =11665.268787 C =12399.735130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.916 3.084 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.156 3.844 11 C -0.128 4.128 12 C 0.105 3.895 13 O -0.542 6.542 14 C 0.105 3.895 15 N -0.706 5.706 16 C 0.591 3.409 17 O -0.543 6.543 18 C -0.037 4.037 19 C -0.177 4.177 20 C 0.007 3.993 21 N -0.267 5.267 22 N -0.265 5.265 23 C 0.072 3.928 24 C 0.259 3.741 25 F -0.195 7.195 26 F -0.190 7.190 27 C 0.116 3.884 28 H 0.254 0.746 29 H 0.109 0.891 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.365 0.635 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.404 0.596 37 H 0.167 0.833 38 H 0.192 0.808 39 H 0.122 0.878 40 H 0.148 0.852 41 H 0.117 0.883 42 H 0.031 0.969 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.571 -19.722 1.410 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.167 4.167 12 C 0.063 3.937 13 O -0.346 6.346 14 C -0.019 4.019 15 N -0.357 5.357 16 C 0.376 3.624 17 O -0.422 6.422 18 C -0.165 4.165 19 C -0.206 4.206 20 C -0.170 4.170 21 N -0.097 5.097 22 N -0.053 5.053 23 C -0.050 4.050 24 C 0.204 3.796 25 F -0.176 7.176 26 F -0.172 7.172 27 C -0.011 4.011 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.211 0.789 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.240 0.760 37 H 0.184 0.816 38 H 0.209 0.791 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.048 0.952 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.972 -20.477 2.931 21.829 hybrid contribution 1.036 1.239 -1.001 1.900 sum 8.008 -19.238 1.930 20.927 Atomic orbital electron populations 1.69770 1.04920 1.25088 1.57043 1.24801 0.95738 0.97788 1.02085 0.86137 0.78422 0.82916 0.77910 1.21155 1.21486 1.21110 1.19001 0.90431 0.82345 1.43848 0.90547 1.44392 1.01959 0.99269 1.86883 1.21955 0.84445 0.91774 0.98720 1.23064 0.95521 0.98285 0.99790 1.22580 0.98110 0.90891 0.82115 1.86648 1.43087 1.76069 1.28808 1.22238 0.84582 0.95465 0.99589 1.45699 1.25778 1.31033 1.33202 1.16868 0.83181 0.80262 0.82108 1.90787 1.60604 1.59948 1.30854 1.21489 0.97538 0.98280 0.99150 1.22384 0.95037 1.03715 0.99446 1.23699 1.00329 0.95629 0.97356 1.73323 1.03435 1.23784 1.09207 1.45236 1.12522 1.25676 1.21853 1.23127 1.03241 0.93591 0.85077 1.22006 0.89388 0.84684 0.83542 1.93049 1.69004 1.72707 1.82878 1.93027 1.86469 1.83887 1.53789 1.21923 0.93627 0.87326 0.98259 0.93517 0.87376 0.96298 0.90952 0.90515 0.78912 0.90078 0.89814 0.76028 0.81596 0.79132 0.85939 0.83438 0.86583 0.95162 0.95868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.09 55.49 0.56 -25.59 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.12 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.57 3.39 -170.07 -0.58 -15.15 16 10 C 0.16 3.65 5.88 -2.53 -0.01 3.64 16 11 C -0.13 -2.28 6.26 -24.58 -0.15 -2.43 16 12 C 0.10 1.62 0.93 -88.78 -0.08 1.53 16 13 O -0.54 -8.15 13.10 -35.23 -0.46 -8.61 16 14 C 0.10 1.32 4.80 -4.04 -0.02 1.30 16 15 N -0.71 -7.41 5.12 -61.47 -0.31 -7.73 16 16 C 0.59 6.72 7.78 -12.64 -0.10 6.62 16 17 O -0.54 -7.30 14.68 5.26 0.08 -7.23 16 18 C -0.04 -0.38 6.96 -82.06 -0.57 -0.96 16 19 C -0.18 -1.48 10.50 -38.99 -0.41 -1.89 16 20 C 0.01 0.06 12.03 -17.43 -0.21 -0.15 16 21 N -0.27 -2.87 11.90 30.59 0.36 -2.50 16 22 N -0.26 -2.75 3.33 -57.14 -0.19 -2.94 16 23 C 0.07 0.63 6.05 -4.04 -0.02 0.61 16 24 C 0.26 2.34 5.55 37.16 0.21 2.55 16 25 F -0.20 -2.11 17.32 2.25 0.04 -2.07 16 26 F -0.19 -1.87 17.34 2.25 0.04 -1.83 16 27 C 0.12 2.14 5.76 -3.07 -0.02 2.12 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 29 H 0.11 2.85 5.87 -51.93 -0.31 2.54 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.29 7.96 -51.93 -0.41 0.87 16 33 H 0.36 3.88 8.44 45.56 0.38 4.26 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.12 8.03 -51.93 -0.42 0.71 16 36 H 0.40 3.49 6.51 -40.82 -0.27 3.22 16 37 H 0.17 0.94 7.59 -52.49 -0.40 0.54 16 38 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.15 1.31 6.20 -51.93 -0.32 0.99 16 41 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.03 0.56 7.82 -51.93 -0.41 0.15 16 43 H 0.02 0.41 8.07 -51.93 -0.42 0.00 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -33.30 366.83 -6.25 -39.55 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.64 Total: 5.79 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -1.65 Total: 6.34 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.16 Total: -53.91 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.38 Total: -15.84 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.08 Total: -3.90 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.30 -6.25 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325095174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.509 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds