Wall clock time and date at job start Wed Apr 1 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00085 * 2 1 4 4 H 1.48501 * 109.47009 * 240.00366 * 3 2 1 5 5 H 1.48497 * 109.46811 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46832 * 120.00377 * 3 2 1 7 7 C 1.38818 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99600 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64929 * 359.95742 * 9 7 2 11 11 C 1.54910 * 104.83386 * 204.16579 * 10 9 7 12 12 C 1.55163 * 101.57891 * 322.99384 * 11 10 9 13 13 O 1.42906 * 110.86970 * 277.06391 * 12 11 10 14 14 C 1.53001 * 110.71962 * 153.86871 * 12 11 10 15 15 N 1.46499 * 109.47000 * 190.02038 * 14 12 11 16 16 C 1.34778 * 119.99800 * 179.97438 * 15 14 12 17 17 O 1.21622 * 119.99792 * 5.11610 * 16 15 14 18 18 C 1.47164 * 119.99776 * 185.11839 * 16 15 14 19 19 C 1.38400 * 126.88626 * 354.38169 * 18 16 15 20 20 C 1.39668 * 105.36129 * 179.97438 * 19 18 16 21 21 N 1.30860 * 107.86196 * 0.02562 * 20 19 18 22 22 N 1.28447 * 110.92578 * 0.02562 * 21 20 19 23 23 C 1.46498 * 125.18729 * 180.02562 * 22 21 20 24 24 C 1.53002 * 109.47232 * 274.11485 * 23 22 21 25 25 F 1.39899 * 109.46809 * 65.00028 * 24 23 22 26 26 F 1.39900 * 109.47372 * 185.00392 * 24 23 22 27 27 C 1.47023 * 125.64840 * 180.02562 * 9 7 2 28 28 H 0.96994 * 119.99871 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36362 * 323.00906 * 10 9 7 30 30 H 1.09000 * 110.36283 * 85.32448 * 10 9 7 31 31 H 1.08997 * 111.00506 * 204.92210 * 11 10 9 32 32 H 1.08995 * 111.00356 * 81.06494 * 11 10 9 33 33 H 0.96701 * 114.00065 * 177.45441 * 13 12 11 34 34 H 1.08998 * 109.47259 * 70.01588 * 14 12 11 35 35 H 1.09004 * 109.46764 * 310.02252 * 14 12 11 36 36 H 0.97001 * 120.00164 * 0.02562 * 15 14 12 37 37 H 1.08000 * 127.31657 * 359.70873 * 19 18 16 38 38 H 1.07999 * 126.07155 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47808 * 34.11742 * 23 22 21 40 40 H 1.09007 * 109.47123 * 154.11967 * 23 22 21 41 41 H 1.09007 * 109.47141 * 305.00709 * 24 23 22 42 42 H 1.09000 * 109.88284 * 59.48774 * 27 9 7 43 43 H 1.08992 * 109.88078 * 298.32145 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0009 11 6 -0.4011 -3.9322 0.6134 12 6 0.7785 -4.7524 0.0274 13 8 0.4751 -5.2090 -1.2924 14 6 1.1240 -5.9312 0.9396 15 7 2.3794 -6.5414 0.4946 16 6 2.8831 -7.6036 1.1537 17 8 2.2506 -8.1134 2.0588 18 6 4.1983 -8.1465 0.7781 19 6 4.9861 -7.7516 -0.2891 20 6 6.1266 -8.5552 -0.2244 21 7 5.9984 -9.3519 0.8058 22 7 4.8859 -9.1417 1.4126 23 6 4.4259 -9.8585 2.6045 24 6 3.7113 -11.1439 2.1826 25 9 4.6248 -12.0036 1.5632 26 9 3.1729 -11.7704 3.3117 27 6 1.9318 -3.7275 -0.0005 28 1 -0.4849 0.8400 0.0004 29 1 -0.5987 -1.7587 0.6167 30 1 -0.5282 -2.4871 -1.0172 31 1 -1.3587 -4.3328 0.2808 32 1 -0.3504 -3.8978 1.7016 33 1 1.1965 -5.6936 -1.7165 34 1 0.3248 -6.6710 0.8958 35 1 1.2354 -5.5770 1.9644 36 1 2.8484 -6.1804 -0.2739 37 1 4.7638 -6.9877 -1.0195 38 1 6.9651 -8.5250 -0.9044 39 1 5.2819 -10.1079 3.2316 40 1 3.7367 -9.2269 3.1650 41 1 2.9097 -10.9016 1.4846 42 1 2.5588 -3.8507 0.8825 43 1 2.5276 -3.8647 -0.9028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325095174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:19 Heat of formation + Delta-G solvation = -97.212686 kcal Electronic energy + Delta-G solvation = -30449.272886 eV Core-core repulsion = 25781.178164 eV Total energy + Delta-G solvation = -4668.094722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.17726 -48.18651 -43.64641 -41.00419 -39.76334 -36.82763 -35.76750 -34.92617 -33.97835 -32.33786 -31.23461 -30.07512 -29.59679 -27.51318 -25.71553 -24.94653 -23.91311 -22.66306 -22.10645 -21.35150 -21.14394 -19.74651 -18.88629 -18.71345 -18.48212 -18.03578 -17.63692 -17.21494 -16.73072 -16.66888 -16.48000 -15.93909 -15.72676 -15.53604 -15.42354 -15.17822 -14.80568 -14.74801 -14.56169 -14.53538 -14.45085 -14.01444 -13.87824 -13.66321 -13.34858 -13.26007 -12.92570 -12.72101 -12.41484 -12.35587 -12.08530 -12.02682 -11.90344 -11.79764 -11.62447 -11.24794 -10.90143 -10.71498 -10.51617 -10.24274 -10.09211 -8.88464 -7.76208 -5.20729 0.05403 1.04372 1.48582 1.51105 1.53990 1.57514 1.91807 2.06363 2.50348 2.55328 3.02618 3.16641 3.18669 3.32673 3.35150 3.49705 3.57441 3.72809 3.73691 3.92236 3.97141 4.03718 4.17009 4.29604 4.49618 4.53123 4.63463 4.68975 4.81354 4.82209 4.96738 5.02247 5.08922 5.18758 5.41970 5.48460 5.56515 5.63888 5.82003 6.23166 6.31397 6.82068 6.87799 6.96757 7.11151 7.78932 8.41974 9.25619 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.002400 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.008409 B =11665.268787 C =12399.735130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.238 4.238 8 H 0.084 0.916 9 N -0.623 5.623 10 C 0.159 3.841 11 C -0.120 4.120 12 C 0.125 3.875 13 O -0.554 6.554 14 C 0.121 3.879 15 N -0.697 5.697 16 C 0.594 3.406 17 O -0.567 6.567 18 C -0.055 4.055 19 C -0.165 4.165 20 C 0.006 3.994 21 N -0.291 5.291 22 N -0.274 5.274 23 C 0.073 3.927 24 C 0.262 3.738 25 F -0.206 7.206 26 F -0.196 7.196 27 C 0.111 3.889 28 H 0.247 0.753 29 H 0.073 0.927 30 H -0.016 1.016 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.386 0.614 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.415 0.585 37 H 0.195 0.805 38 H 0.220 0.780 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.123 0.877 42 H 0.039 0.961 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -20.743 0.907 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.102 0.898 9 N -0.349 5.349 10 C 0.034 3.966 11 C -0.159 4.159 12 C 0.084 3.916 13 O -0.362 6.362 14 C -0.003 4.003 15 N -0.349 5.349 16 C 0.380 3.620 17 O -0.447 6.447 18 C -0.182 4.182 19 C -0.194 4.194 20 C -0.171 4.171 21 N -0.122 5.122 22 N -0.062 5.062 23 C -0.049 4.049 24 C 0.207 3.793 25 F -0.187 7.187 26 F -0.177 7.177 27 C -0.015 4.015 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.002 0.998 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.236 0.764 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.253 0.747 37 H 0.212 0.788 38 H 0.237 0.763 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.140 0.860 42 H 0.057 0.943 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.630 -21.539 2.408 23.328 hybrid contribution 0.585 1.512 -0.909 1.859 sum 9.215 -20.027 1.499 22.096 Atomic orbital electron populations 1.70038 1.06276 1.25099 1.58512 1.25633 0.96572 1.01037 1.02766 0.85144 0.77103 0.78821 0.78212 1.20397 1.22259 1.20213 1.19421 0.91079 0.83648 1.42587 0.89791 1.44680 1.02516 1.00836 1.86847 1.21655 0.84290 0.94283 0.96403 1.22905 0.97407 0.95284 1.00316 1.22202 0.95449 0.91026 0.82958 1.86615 1.44480 1.76413 1.28660 1.21907 0.85737 0.94345 0.98360 1.45499 1.25135 1.30786 1.33481 1.16966 0.83402 0.79996 0.81616 1.90782 1.61324 1.60688 1.31906 1.21475 0.97426 0.99076 1.00226 1.22794 0.94172 1.03532 0.98872 1.24292 1.01156 0.94733 0.96941 1.73318 1.03840 1.24853 1.10223 1.45334 1.12595 1.26004 1.22242 1.23128 1.03607 0.93179 0.85011 1.22072 0.89357 0.84470 0.83393 1.93023 1.69465 1.73131 1.83093 1.93013 1.86539 1.84038 1.54112 1.22160 0.94808 0.85436 0.99059 0.94359 0.90876 0.99812 0.89585 0.89357 0.76439 0.89367 0.90273 0.74748 0.78824 0.76304 0.84874 0.83658 0.85953 0.94272 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.70 10.09 21.65 0.22 -55.48 16 2 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 3 Si 0.98 44.40 29.55 68.60 2.03 46.43 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.24 -12.79 10.27 84.04 0.86 -11.92 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.62 -30.21 3.39 -691.99 -2.35 -32.56 16 10 C 0.16 7.62 5.88 86.85 0.51 8.13 16 11 C -0.12 -4.18 6.26 31.99 0.20 -3.98 16 12 C 0.13 3.59 0.93 -9.60 -0.01 3.58 16 13 O -0.55 -15.22 13.10 -148.98 -1.95 -17.18 16 14 C 0.12 2.71 4.80 86.38 0.41 3.12 16 15 N -0.70 -12.53 5.12 -466.63 -2.39 -14.92 16 16 C 0.59 12.14 7.78 86.59 0.67 12.81 16 17 O -0.57 -14.29 14.68 -4.10 -0.06 -14.35 16 18 C -0.06 -1.01 6.96 40.79 0.28 -0.72 16 19 C -0.17 -2.22 10.50 22.65 0.24 -1.98 16 20 C 0.01 0.08 12.03 85.18 1.02 1.10 16 21 N -0.29 -5.71 11.90 -57.15 -0.68 -6.39 16 22 N -0.27 -5.24 3.33 -334.69 -1.12 -6.35 16 23 C 0.07 1.21 6.05 86.38 0.52 1.73 16 24 C 0.26 4.53 5.55 71.98 0.40 4.93 16 25 F -0.21 -4.30 17.32 44.97 0.78 -3.52 16 26 F -0.20 -3.72 17.34 44.97 0.78 -2.94 16 27 C 0.11 3.88 5.76 86.73 0.50 4.38 16 28 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.07 4.02 5.87 -2.39 -0.01 4.01 16 30 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 32 H 0.09 2.86 7.96 -2.39 -0.02 2.84 16 33 H 0.39 6.86 8.44 -74.06 -0.62 6.23 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.08 1.92 8.03 -2.38 -0.02 1.90 16 36 H 0.41 5.62 6.51 -92.71 -0.60 5.02 16 37 H 0.19 1.34 7.59 -2.91 -0.02 1.31 16 38 H 0.22 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.15 2.48 6.20 -2.38 -0.01 2.46 16 41 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.04 1.33 7.82 -2.39 -0.02 1.31 16 43 H 0.04 1.25 8.07 -2.39 -0.02 1.23 16 Total: -1.00 -73.26 366.83 1.20 -72.07 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.15 Total: 17.27 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 6.09 Total: 17.93 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -6.32 Total: -115.70 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -2.01 Total: -31.53 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.56 Total: -6.46 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.26 1.20 -72.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325095174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.146 kcal (2) G-P(sol) polarization free energy of solvation -73.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds