Wall clock time and date at job start Wed Apr 1 2020 02:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.57991 * 119.98869 * 2 1 4 4 C 1.55989 * 80.73586 * 161.26043 * 3 2 1 5 5 C 1.54875 * 119.93035 * 98.34500 * 2 1 3 6 6 C 1.56749 * 106.37149 * 59.01396 * 4 3 2 7 7 N 1.49192 * 99.23235 * 317.77573 * 6 4 3 8 8 C 1.34778 * 129.44143 * 180.17922 * 7 6 4 9 9 O 1.21355 * 120.00241 * 179.97438 * 8 7 6 10 10 C 1.49454 * 120.00145 * 359.97283 * 8 7 6 11 11 O 1.21347 * 119.99840 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00144 * 180.02562 * 10 8 7 13 13 C 1.46494 * 120.00107 * 179.97438 * 12 10 8 14 14 C 1.50704 * 109.47237 * 179.97438 * 13 12 10 15 15 C 1.38296 * 119.93248 * 269.72991 * 14 13 12 16 16 C 1.38099 * 120.06933 * 179.72766 * 15 14 13 17 17 C 1.38887 * 119.92876 * 0.56276 * 16 15 14 18 18 O 1.35744 * 120.06908 * 179.68627 * 17 16 15 19 19 C 1.34834 * 117.00220 * 174.48720 * 18 17 16 20 20 H 1.07992 * 119.99502 * 5.06196 * 19 18 17 21 21 C 1.38653 * 120.00214 * 185.05375 * 19 18 17 22 22 N 1.31555 * 120.00044 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99996 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46959 * 60.00503 * 23 21 19 25 25 H 1.48500 * 109.47331 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47395 * 300.00409 * 23 21 19 27 27 C 1.38876 * 119.85994 * 359.71123 * 17 16 15 28 28 C 1.38099 * 119.93183 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47157 * 198.95787 * 1 2 3 30 30 H 1.08998 * 109.46831 * 318.95914 * 1 2 3 31 31 H 1.08997 * 109.46837 * 78.95596 * 1 2 3 32 32 H 1.09003 * 114.92741 * 48.42099 * 3 2 1 33 33 H 1.09001 * 114.70829 * 274.10011 * 3 2 1 34 34 H 1.09003 * 120.19795 * 197.24134 * 4 3 2 35 35 H 1.08989 * 113.74814 * 85.32590 * 5 2 1 36 36 H 1.09000 * 115.16174 * 311.88361 * 5 2 1 37 37 H 1.09003 * 111.44801 * 75.27840 * 6 4 3 38 38 H 1.09000 * 111.44535 * 200.27132 * 6 4 3 39 39 H 0.97001 * 119.99794 * 359.97438 * 12 10 8 40 40 H 1.08994 * 109.47290 * 299.99611 * 13 12 10 41 41 H 1.08998 * 109.47195 * 60.00036 * 13 12 10 42 42 H 1.08006 * 119.96651 * 359.97420 * 15 14 13 43 43 H 1.08001 * 120.03632 * 180.27442 * 16 15 14 44 44 H 0.96993 * 120.00244 * 179.97438 * 22 21 19 45 45 H 1.07994 * 120.03396 * 179.97438 * 27 17 16 46 46 H 1.08003 * 119.96651 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.3197 1.3684 0.0000 4 6 3.4569 0.4222 0.4946 5 6 2.3028 -0.1948 1.3280 6 6 3.6536 -0.6557 -0.6263 7 7 2.2229 -0.9300 -0.9483 8 6 1.6963 -1.7838 -1.8485 9 8 0.4920 -1.8710 -1.9698 10 6 2.5955 -2.6231 -2.6973 11 8 3.7998 -2.5356 -2.5764 12 7 2.0689 -3.4765 -3.5978 13 6 2.9503 -4.2989 -4.4302 14 6 2.1180 -5.1597 -5.3453 15 6 1.7209 -6.4195 -4.9355 16 6 0.9534 -7.2084 -5.7695 17 6 0.5902 -6.7402 -7.0256 18 8 -0.1588 -7.5159 -7.8502 19 6 -0.5722 -6.9589 -9.0064 20 1 -0.2377 -5.9689 -9.2787 21 6 -1.4266 -7.6574 -9.8459 22 7 -1.8343 -8.8633 -9.5141 23 14 -1.9998 -6.8854 -11.4473 24 1 -0.8227 -6.5863 -12.3018 25 1 -2.9003 -7.8289 -12.1573 26 1 -2.7325 -5.6270 -11.1559 27 6 0.9953 -5.4770 -7.4364 28 6 1.7572 -4.6902 -6.5952 29 1 -0.3633 -0.9719 0.3339 30 1 -0.3633 0.7751 0.6748 31 1 -0.3633 0.1969 -1.0086 32 1 1.9811 2.0942 0.7394 33 1 2.4861 1.7984 -0.9877 34 1 4.3416 0.8350 0.9794 35 1 2.4513 -1.2396 1.6002 36 1 1.9632 0.4259 2.1571 37 1 4.1838 -0.2450 -1.4856 38 1 4.1529 -1.5448 -0.2411 39 1 1.1063 -3.5462 -3.6947 40 1 3.5949 -3.6524 -5.0258 41 1 3.5636 -4.9349 -3.7920 42 1 2.0080 -6.7851 -3.9606 43 1 0.6399 -8.1904 -5.4472 44 1 -2.4323 -9.3518 -10.1011 45 1 0.7148 -5.1103 -8.4127 46 1 2.0722 -3.7076 -6.9139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330429016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:50 Heat of formation + Delta-G solvation = -1.303540 kcal Electronic energy + Delta-G solvation = -28780.669829 eV Core-core repulsion = 24638.670818 eV Total energy + Delta-G solvation = -4141.999011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79614 -40.07353 -39.12611 -38.12581 -36.91772 -34.69184 -32.86269 -32.38002 -30.92408 -30.32632 -30.07735 -26.85989 -26.17815 -25.75060 -25.29483 -24.04196 -22.08194 -21.71368 -20.69779 -20.44254 -19.14849 -18.09607 -17.77609 -17.02631 -16.66416 -16.19975 -15.84060 -15.63963 -15.07449 -14.75505 -14.56379 -14.45712 -14.29379 -13.98911 -13.92794 -13.73128 -13.53074 -13.39258 -13.29250 -12.81161 -12.75379 -12.34042 -12.21491 -12.14700 -11.78483 -11.70596 -11.56908 -11.53304 -11.37250 -10.97990 -10.92555 -10.83734 -10.73389 -10.62036 -10.50910 -9.60755 -9.45070 -9.19895 -8.96858 -8.91573 -8.30350 -7.35429 -6.53712 -4.12613 1.34725 1.82169 2.11839 2.24130 3.08749 3.09718 3.11520 3.12948 3.35203 3.77660 3.86953 3.90087 4.02939 4.07360 4.31494 4.53723 4.62179 4.98948 5.00406 5.10525 5.12464 5.18785 5.20921 5.22559 5.33995 5.37864 5.38572 5.42638 5.46502 5.59601 5.62100 5.66016 5.73259 5.74367 5.78403 6.02056 6.10431 6.24468 6.31989 6.57358 6.78007 6.91859 7.00709 7.11091 7.21986 7.25037 7.33664 7.62073 7.69396 7.90749 7.94611 8.91317 9.58892 10.63572 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.001857 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.039761 B =15076.592739 C =15570.498484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.130 3.870 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.151 4.151 6 C 0.125 3.875 7 N -0.593 5.593 8 C 0.530 3.470 9 O -0.514 6.514 10 C 0.505 3.495 11 O -0.526 6.526 12 N -0.688 5.688 13 C 0.179 3.821 14 C -0.220 4.220 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.162 3.838 18 O -0.171 6.171 19 C -0.394 4.394 20 H 0.093 0.907 21 C 0.041 3.959 22 N -0.859 5.859 23 Si 0.943 3.057 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.237 4.237 28 C -0.048 4.048 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.414 0.586 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.272 0.728 45 H 0.129 0.871 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.148 18.590 19.201 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.045 3.955 3 C -0.177 4.177 4 C -0.158 4.158 5 C -0.189 4.189 6 C 0.003 3.997 7 N -0.329 5.329 8 C 0.313 3.687 9 O -0.389 6.389 10 C 0.285 3.715 11 O -0.403 6.403 12 N -0.341 5.341 13 C 0.057 3.943 14 C -0.221 4.221 15 C -0.071 4.071 16 C -0.214 4.214 17 C 0.107 3.893 18 O -0.074 6.074 19 C -0.470 4.470 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.492 5.492 23 Si 0.767 3.233 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.256 4.256 28 C -0.067 4.067 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.251 0.749 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.147 0.853 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.058 18.020 18.983 27.697 hybrid contribution -0.612 0.296 -0.948 1.166 sum 8.446 18.316 18.036 27.057 Atomic orbital electron populations 1.21347 0.90173 1.02702 1.03301 1.23542 0.93350 0.89932 0.88630 1.24649 0.96020 0.94775 1.02235 1.24532 0.97280 0.96665 0.97309 1.24224 0.96677 1.01832 0.96184 1.23014 0.81561 0.97799 0.97280 1.49161 1.09362 1.38174 1.36238 1.19900 0.88137 0.80421 0.80208 1.90782 1.14520 1.66433 1.67211 1.19960 0.88168 0.81585 0.81759 1.90726 1.14512 1.66971 1.68112 1.46238 1.12303 1.39063 1.36449 1.20132 0.90953 0.91872 0.91317 1.19132 1.09624 0.96707 0.96675 1.20527 0.95576 0.93049 0.97915 1.20215 1.06126 1.01771 0.93322 1.19446 0.90153 0.89669 0.90032 1.83976 1.57829 1.37228 1.28346 1.21317 1.28623 1.02360 0.94696 0.88927 1.25326 0.95800 0.95753 0.99582 1.70023 1.31219 1.10652 1.37347 0.85754 0.78950 0.78730 0.79879 1.19411 1.20195 1.19397 1.21152 1.06216 0.96183 1.02079 1.20639 0.95314 0.97919 0.92814 0.91355 0.91256 0.90965 0.87625 0.90836 0.86165 0.90960 0.88183 0.89632 0.89315 0.74908 0.90966 0.90927 0.86898 0.86286 0.91789 0.85344 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.71 37.16 0.32 -0.70 16 2 C 0.13 1.11 2.53 -132.46 -0.34 0.77 16 3 C -0.14 -0.84 7.85 -25.96 -0.20 -1.05 16 4 C -0.14 -0.82 6.33 -92.07 -0.58 -1.40 16 5 C -0.15 -0.96 7.33 -28.17 -0.21 -1.17 16 6 C 0.13 1.08 5.70 -0.52 0.00 1.08 16 7 N -0.59 -6.47 3.38 -155.13 -0.52 -6.99 16 8 C 0.53 7.08 8.02 -11.58 -0.09 6.98 16 9 O -0.51 -7.81 15.00 5.49 0.08 -7.73 16 10 C 0.51 6.94 7.88 -11.58 -0.09 6.85 16 11 O -0.53 -7.77 14.87 5.50 0.08 -7.69 16 12 N -0.69 -9.29 5.54 -61.91 -0.34 -9.64 16 13 C 0.18 2.44 5.80 -5.19 -0.03 2.41 16 14 C -0.22 -3.53 5.25 -104.58 -0.55 -4.08 16 15 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 16 C -0.20 -3.95 9.99 -39.39 -0.39 -4.34 16 17 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 18 O -0.17 -4.77 9.76 0.06 0.00 -4.77 16 19 C -0.39 -10.75 9.49 30.89 0.29 -10.45 16 20 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -24.70 13.67 55.48 0.76 -23.94 16 23 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.24 -4.93 9.17 -39.40 -0.36 -5.30 16 28 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 29 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.76 7.55 -51.93 -0.39 0.36 16 32 H 0.11 0.42 7.94 -51.93 -0.41 0.01 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.54 8.10 -51.94 -0.42 0.12 16 36 H 0.10 0.44 7.93 -51.93 -0.41 0.03 16 37 H 0.09 0.77 8.00 -51.93 -0.42 0.35 16 38 H 0.09 0.79 7.99 -51.93 -0.41 0.37 16 39 H 0.41 5.67 7.94 -40.82 -0.32 5.35 16 40 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 44 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 46 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -31.47 386.09 -8.79 -40.26 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.29 Total: 7.94 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.36 Total: -8.36 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.11 Total: -40.57 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.16 Total: -20.18 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.47 -8.79 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330429016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.960 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds