Wall clock time and date at job start Wed Apr 1 2020 02:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.54468 * 119.80921 * 2 1 4 4 C 1.55150 * 82.11842 * 161.52539 * 3 2 1 5 5 C 1.55995 * 82.48272 * 317.94509 * 4 3 2 6 6 C 1.56747 * 101.77272 * 63.19087 * 4 3 2 7 7 N 1.49192 * 99.23627 * 316.69963 * 6 4 3 8 8 C 1.34774 * 129.44561 * 179.82199 * 7 6 4 9 9 O 1.21346 * 120.00167 * 180.02562 * 8 7 6 10 10 C 1.49452 * 119.99949 * 359.75351 * 8 7 6 11 11 O 1.21346 * 119.99829 * 0.27003 * 10 8 7 12 12 N 1.34778 * 119.99892 * 180.27488 * 10 8 7 13 13 C 1.46499 * 119.99866 * 179.97438 * 12 10 8 14 14 C 1.50695 * 109.47364 * 179.97438 * 13 12 10 15 15 C 1.38325 * 119.96489 * 269.72569 * 14 13 12 16 16 C 1.38282 * 120.13695 * 179.75945 * 15 14 13 17 17 C 1.38121 * 120.06799 * 0.51599 * 16 15 14 18 18 C 1.38859 * 119.93167 * 359.74208 * 17 16 15 19 19 O 1.35748 * 120.07036 * 179.97438 * 18 17 16 20 20 C 1.34835 * 117.00199 * 354.48527 * 19 18 17 21 21 H 1.07997 * 119.99505 * 5.05409 * 20 19 18 22 22 C 1.38648 * 120.00065 * 185.05992 * 20 19 18 23 23 N 1.31561 * 119.99807 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00223 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47129 * 89.99918 * 24 22 20 26 26 H 1.48507 * 109.46996 * 210.00105 * 24 22 20 27 27 H 1.48501 * 109.46903 * 330.00070 * 24 22 20 28 28 C 1.38079 * 119.96679 * 89.99746 * 14 13 12 29 29 H 1.08994 * 109.46957 * 182.87919 * 1 2 3 30 30 H 1.09006 * 109.46785 * 302.88136 * 1 2 3 31 31 H 1.08994 * 109.46796 * 62.87816 * 1 2 3 32 32 H 1.08997 * 114.49108 * 48.18882 * 3 2 1 33 33 H 1.09001 * 114.34235 * 274.85786 * 3 2 1 34 34 H 1.09008 * 121.02028 * 197.10198 * 4 3 2 35 35 H 1.08996 * 114.53210 * 154.99087 * 5 4 3 36 36 H 1.09000 * 114.53622 * 288.70401 * 5 4 3 37 37 H 1.09002 * 111.44450 * 199.19737 * 6 4 3 38 38 H 1.09000 * 111.49039 * 74.22029 * 6 4 3 39 39 H 0.96995 * 119.99833 * 359.97438 * 12 10 8 40 40 H 1.09000 * 109.47166 * 300.00005 * 13 12 10 41 41 H 1.09005 * 109.47077 * 60.00081 * 13 12 10 42 42 H 1.07994 * 119.93094 * 0.02562 * 15 14 13 43 43 H 1.07996 * 119.96941 * 180.25294 * 16 15 14 44 44 H 1.08001 * 120.03783 * 179.76151 * 17 16 15 45 45 H 0.96998 * 119.99803 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.03178 * 359.95818 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2979 1.3403 0.0000 4 6 3.4569 0.4311 0.4870 5 6 2.3246 -0.1989 1.3556 6 6 3.6535 -0.5222 -0.7417 7 7 2.2229 -0.8068 -1.0552 8 6 1.6963 -1.5766 -2.0281 9 8 0.4922 -1.6885 -2.1283 10 6 2.5952 -2.2874 -2.9874 11 8 3.7993 -2.1754 -2.8873 12 7 2.0684 -3.0528 -3.9637 13 6 2.9496 -3.7491 -4.9044 14 6 2.1172 -4.5301 -5.8883 15 6 1.7689 -5.8400 -5.6121 16 6 1.0010 -6.5584 -6.5101 17 6 0.5884 -5.9730 -7.6912 18 6 0.9410 -4.6600 -7.9738 19 8 0.5374 -4.0821 -9.1340 20 6 -0.1050 -4.8703 -10.0195 21 1 -0.3495 -5.8890 -9.7574 22 6 -0.4513 -4.3729 -11.2665 23 7 -1.0776 -5.1422 -12.1307 24 14 -0.0287 -2.6107 -11.7196 25 1 1.3144 -2.5706 -12.3518 26 1 -1.0405 -2.0885 -12.6730 27 1 -0.0241 -1.7721 -10.4941 28 6 1.7078 -3.9393 -7.0673 29 1 -0.3633 -1.0263 0.0516 30 1 -0.3633 0.5580 0.8631 31 1 -0.3633 0.4685 -0.9146 32 1 1.9487 2.0611 0.7393 33 1 2.4483 1.7719 -0.9895 34 1 4.3414 0.8548 0.9627 35 1 2.5027 -1.2329 1.6507 36 1 1.9759 0.4332 2.1724 37 1 4.1880 -1.4296 -0.4605 38 1 4.1486 -0.0118 -1.5678 39 1 1.1059 -3.1425 -4.0435 40 1 3.5576 -3.0203 -5.4403 41 1 3.5993 -4.4316 -4.3564 42 1 2.0937 -6.3012 -4.6912 43 1 0.7272 -7.5796 -6.2898 44 1 -0.0080 -6.5358 -8.3940 45 1 -1.3203 -4.7942 -13.0029 46 1 1.9832 -2.9178 -7.2840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334080755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:52 Heat of formation + Delta-G solvation = -18.204047 kcal Electronic energy + Delta-G solvation = -28993.203590 eV Core-core repulsion = 24850.471718 eV Total energy + Delta-G solvation = -4142.731872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.51800 -41.24377 -40.78702 -39.23427 -38.59962 -36.06635 -34.47695 -33.71641 -32.37830 -31.56632 -31.04537 -28.15994 -27.32469 -26.98622 -26.21978 -25.34131 -23.38994 -22.68639 -22.22842 -21.21819 -20.19739 -19.66166 -19.04520 -18.47592 -17.67446 -17.26854 -16.91980 -16.68086 -16.61942 -16.44807 -15.93604 -15.71874 -15.53398 -15.43304 -14.97032 -14.81271 -14.72853 -14.50768 -14.27991 -14.16543 -14.04570 -13.90095 -13.46823 -13.14871 -13.02415 -12.71201 -12.70165 -12.55505 -12.50594 -12.42869 -12.29626 -12.17008 -11.97197 -11.50609 -11.35505 -11.17556 -10.94373 -10.68934 -10.37928 -9.83650 -9.77723 -9.16091 -8.52170 -6.25044 0.25220 0.27174 0.60943 1.14901 1.29768 1.33408 1.49681 2.05001 2.25645 2.31352 2.75128 2.95292 3.08374 3.20623 3.27312 3.37529 3.49016 3.52182 3.67659 4.01649 4.03095 4.21732 4.32951 4.35687 4.44552 4.51754 4.56356 4.65005 4.67660 4.71021 4.78067 4.79197 4.87577 4.88996 4.94061 5.01646 5.07889 5.10156 5.14562 5.19159 5.32270 5.34011 5.57584 5.64349 5.71455 5.85961 5.97364 6.15993 6.22257 6.53903 6.82116 6.84891 7.55452 8.59182 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002116 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.126007 B =13230.147003 C =13902.731764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.099 3.901 3 C -0.143 4.143 4 C -0.123 4.123 5 C -0.122 4.122 6 C 0.114 3.886 7 N -0.594 5.594 8 C 0.523 3.477 9 O -0.544 6.544 10 C 0.510 3.490 11 O -0.534 6.534 12 N -0.687 5.687 13 C 0.173 3.827 14 C -0.067 4.067 15 C -0.157 4.157 16 C -0.075 4.075 17 C -0.226 4.226 18 C 0.118 3.882 19 O -0.245 6.245 20 C -0.399 4.399 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.921 5.921 24 Si 0.968 3.032 25 H -0.265 1.265 26 H -0.268 1.268 27 H -0.265 1.265 28 C -0.169 4.169 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.046 0.954 32 H 0.129 0.871 33 H 0.057 0.943 34 H 0.151 0.849 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.416 0.584 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.111 0.889 45 H 0.285 0.715 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.220 11.302 30.213 33.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.016 3.984 3 C -0.180 4.180 4 C -0.141 4.141 5 C -0.160 4.160 6 C -0.007 4.007 7 N -0.329 5.329 8 C 0.307 3.693 9 O -0.422 6.422 10 C 0.291 3.709 11 O -0.411 6.411 12 N -0.339 5.339 13 C 0.051 3.949 14 C -0.067 4.067 15 C -0.176 4.176 16 C -0.092 4.092 17 C -0.245 4.245 18 C 0.069 3.931 19 O -0.152 6.152 20 C -0.475 4.475 21 H 0.101 0.899 22 C -0.188 4.188 23 N -0.562 5.562 24 Si 0.791 3.209 25 H -0.190 1.190 26 H -0.192 1.192 27 H -0.189 1.189 28 C -0.189 4.189 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.076 0.924 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.252 0.748 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.129 0.871 45 H 0.094 0.906 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.332 11.434 29.814 33.561 hybrid contribution -0.825 -0.135 -1.445 1.670 sum 9.507 11.299 28.369 31.982 Atomic orbital electron populations 1.21302 0.90759 1.02332 1.02721 1.24026 0.93382 0.92492 0.88534 1.24209 0.96203 0.95144 1.02486 1.24528 0.98230 0.96385 0.94945 1.24793 0.94669 1.02230 0.94308 1.23208 0.80236 0.99718 0.97508 1.49360 1.10969 1.44389 1.28158 1.19743 0.87662 0.80195 0.81739 1.90766 1.15350 1.63320 1.72742 1.20031 0.88075 0.80495 0.82303 1.90725 1.14853 1.62674 1.72832 1.45908 1.12185 1.46667 1.29189 1.20283 0.90744 0.95304 0.88519 1.19442 0.98798 0.94857 0.93618 1.21068 1.01709 0.93853 1.01000 1.21158 0.95773 1.00347 0.91967 1.21423 1.06726 0.95783 1.00617 1.19577 0.93998 0.92628 0.86902 1.83521 1.68064 1.38502 1.25146 1.20707 1.35532 0.96604 0.94660 0.89864 1.25255 0.95755 1.03717 0.94069 1.69724 1.40144 1.38409 1.07880 0.85248 0.78703 0.78425 0.78531 1.19033 1.19222 1.18933 1.20302 1.02914 1.00643 0.95004 0.93207 0.88242 0.93499 0.85324 0.92440 0.83181 0.91352 0.84689 0.89794 0.89931 0.74787 0.89919 0.88114 0.83111 0.83692 0.87086 0.90557 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 8.71 71.98 0.63 -1.24 16 2 C 0.10 1.48 2.53 1.35 0.00 1.49 16 3 C -0.14 -1.40 7.31 29.52 0.22 -1.18 16 4 C -0.12 -0.99 6.33 -11.73 -0.07 -1.07 16 5 C -0.12 -1.00 7.89 31.25 0.25 -0.75 16 6 C 0.11 1.76 5.71 87.17 0.50 2.26 16 7 N -0.59 -12.28 3.38 -763.04 -2.58 -14.85 16 8 C 0.52 13.70 8.02 87.27 0.70 14.40 16 9 O -0.54 -16.61 15.00 -3.23 -0.05 -16.66 16 10 C 0.51 13.26 7.88 87.27 0.69 13.95 16 11 O -0.53 -14.72 14.87 -3.23 -0.05 -14.76 16 12 N -0.69 -17.12 5.54 -468.15 -2.59 -19.72 16 13 C 0.17 4.16 5.80 85.63 0.50 4.66 16 14 C -0.07 -1.95 5.25 -19.88 -0.10 -2.05 16 15 C -0.16 -4.34 9.70 22.30 0.22 -4.13 16 16 C -0.07 -2.40 10.04 22.25 0.22 -2.17 16 17 C -0.23 -9.57 9.17 22.39 0.21 -9.37 16 18 C 0.12 5.40 6.65 22.58 0.15 5.55 16 19 O -0.24 -13.21 8.59 -22.77 -0.20 -13.40 16 20 C -0.40 -23.36 9.95 67.92 0.68 -22.68 16 21 H 0.08 5.07 5.44 -2.91 -0.02 5.06 16 22 C 0.01 0.62 5.49 84.83 0.47 1.08 16 23 N -0.92 -54.92 13.96 21.61 0.30 -54.62 16 24 Si 0.97 45.68 28.62 68.60 1.96 47.64 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 28 C -0.17 -6.29 9.65 22.39 0.22 -6.07 16 29 H 0.05 1.02 7.54 -2.39 -0.02 1.01 16 30 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.05 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.13 0.56 7.89 -2.39 -0.02 0.54 16 33 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 34 H 0.15 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.14 0.34 7.90 -2.39 -0.02 0.33 16 37 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16 38 H 0.08 1.38 7.98 -2.39 -0.02 1.36 16 39 H 0.42 10.65 7.94 -92.71 -0.74 9.92 16 40 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 41 H 0.10 2.09 8.08 -2.38 -0.02 2.07 16 42 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.11 5.19 5.64 -2.91 -0.02 5.17 16 45 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -72.09 384.92 2.53 -69.56 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.28 Total: 24.15 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.45 Total: -7.33 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -4.87 Total: -89.19 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.29 Total: -44.82 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.96 Total: 47.64 kcal Total: -72.09 2.53 -69.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334080755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.355 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds