Wall clock time and date at job start Wed Apr 1 2020 02:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99866 * 2 1 4 4 H 1.48501 * 109.46988 * 240.00252 * 3 2 1 5 5 H 1.48503 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47216 * 120.00293 * 3 2 1 7 7 C 1.37880 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99782 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.88825 * 62.43377 * 9 7 2 11 11 C 1.55402 * 111.07091 * 186.21677 * 9 7 2 12 12 C 1.54320 * 102.83117 * 153.49075 * 11 9 7 13 13 N 1.47018 * 107.40047 * 337.97166 * 12 11 9 14 14 C 1.34778 * 125.64919 * 178.82723 * 13 12 11 15 15 O 1.21343 * 120.00268 * 180.02562 * 14 13 12 16 16 C 1.49453 * 119.99973 * 0.03275 * 14 13 12 17 17 O 1.21349 * 119.99948 * 6.66792 * 16 14 13 18 18 N 1.34775 * 120.00191 * 186.68025 * 16 14 13 19 19 C 1.47150 * 120.98037 * 7.64968 * 18 16 14 20 20 C 1.53712 * 108.16141 * 129.44076 * 19 18 16 21 21 O 1.42957 * 109.14822 * 52.53461 * 20 19 18 22 22 C 1.42961 * 114.16975 * 297.29206 * 21 20 19 23 23 H 1.08999 * 109.51025 * 302.65398 * 22 21 20 24 24 C 1.52999 * 109.55692 * 182.53271 * 22 21 20 25 25 C 1.52996 * 109.47370 * 65.22548 * 24 22 21 26 26 F 1.39902 * 109.47466 * 180.02562 * 25 24 22 27 27 C 1.47146 * 120.98254 * 187.94087 * 18 16 14 28 28 C 1.47428 * 108.70440 * 358.86820 * 13 12 11 29 29 H 0.96997 * 120.00292 * 0.02562 * 1 2 3 30 30 H 0.96706 * 113.99470 * 297.56837 * 10 9 7 31 31 H 1.08997 * 110.69747 * 35.19738 * 11 9 7 32 32 H 1.09011 * 110.84983 * 271.85003 * 11 9 7 33 33 H 1.09002 * 109.87988 * 218.47956 * 12 11 9 34 34 H 1.08997 * 109.88549 * 97.47109 * 12 11 9 35 35 H 1.09010 * 109.68346 * 249.21740 * 19 18 16 36 36 H 1.08997 * 109.68636 * 9.76620 * 19 18 16 37 37 H 1.08997 * 109.65273 * 292.56864 * 20 19 18 38 38 H 1.09004 * 109.44230 * 172.37213 * 20 19 18 39 39 H 1.08995 * 109.47086 * 185.22803 * 24 22 21 40 40 H 1.09004 * 109.46588 * 305.22550 * 24 22 21 41 41 H 1.09008 * 109.46997 * 299.99986 * 25 24 22 42 42 H 1.08999 * 109.47006 * 59.99994 * 25 24 22 43 43 H 1.08995 * 109.68360 * 350.22643 * 27 18 16 44 44 H 1.08999 * 109.68603 * 110.74642 * 27 18 16 45 45 H 1.08996 * 110.36596 * 142.96603 * 28 13 12 46 46 H 1.08999 * 110.36477 * 265.28697 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4608 -2.6312 -1.1838 11 6 2.2202 -3.7038 0.1559 12 6 1.3262 -4.7807 0.8058 13 7 0.2064 -4.0871 1.4587 14 6 -0.8072 -4.6806 2.1196 15 8 -1.6820 -4.0058 2.6214 16 6 -0.8538 -6.1700 2.2344 17 8 0.0790 -6.8384 1.8400 18 7 -1.9320 -6.7708 2.7757 19 6 -3.1415 -6.0009 3.1071 20 6 -4.3517 -6.7214 2.4916 21 8 -4.3398 -8.0912 2.9005 22 6 -3.1994 -8.8265 2.4504 23 1 -3.1411 -8.7784 1.3631 24 6 -3.3246 -10.2863 2.8912 25 6 -4.5191 -10.9314 2.1857 26 9 -4.6340 -12.2661 2.5892 27 6 -1.9322 -8.2148 3.0587 28 6 0.3754 -2.6347 1.2701 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2253 -1.9558 -1.2759 31 1 3.0523 -3.4463 0.8112 32 1 2.5828 -4.0388 -0.8161 33 1 1.8983 -5.3399 1.5462 34 1 0.9471 -5.4588 0.0412 35 1 -3.2558 -5.9447 4.1897 36 1 -3.0617 -4.9957 2.6933 37 1 -4.2976 -6.6655 1.4044 38 1 -5.2704 -6.2466 2.8360 39 1 -2.4137 -10.8244 2.6291 40 1 -3.4737 -10.3284 3.9702 41 1 -5.4300 -10.3933 2.4479 42 1 -4.3699 -10.8892 1.1068 43 1 -1.0513 -8.6764 2.6127 44 1 -1.9262 -8.3777 4.1364 45 1 -0.5923 -2.1570 1.1166 46 1 0.8834 -2.1971 2.1294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335033538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:43 Heat of formation + Delta-G solvation = -193.316654 kcal Electronic energy + Delta-G solvation = -31359.773912 eV Core-core repulsion = 26778.679363 eV Total energy + Delta-G solvation = -4581.094549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.88493 -40.91810 -39.44551 -38.18625 -37.41606 -35.17096 -34.15129 -34.07972 -32.31241 -30.33597 -30.00754 -28.36052 -27.92277 -25.87321 -24.63047 -23.84409 -22.77367 -21.84094 -21.00525 -19.76161 -19.05033 -17.36949 -17.22373 -17.11486 -16.79221 -16.42400 -16.07426 -15.91780 -15.73760 -15.57675 -15.19971 -14.84246 -14.74201 -14.56459 -14.42254 -14.12830 -13.49320 -13.24103 -13.05923 -12.94774 -12.89290 -12.59197 -12.37800 -12.16955 -11.73423 -11.64537 -11.55110 -11.46160 -11.13477 -11.10052 -11.03944 -10.94740 -10.67059 -10.65707 -10.55301 -10.38561 -10.28024 -9.43659 -9.03447 -8.81403 -8.72826 -8.48668 -8.00516 -6.35791 -4.45273 1.63092 2.34351 3.17785 3.23780 3.25652 3.30964 3.41734 3.59031 4.00733 4.20464 4.39468 4.42115 4.49370 4.66360 4.70122 4.79895 4.87725 4.91766 5.00870 5.15345 5.24179 5.33183 5.36398 5.40464 5.51333 5.62919 5.70891 5.71253 5.75281 5.87118 5.96928 6.14263 6.22359 6.43014 6.65593 6.70957 6.76390 6.80926 6.97998 7.09872 7.22529 7.65169 7.66277 7.92743 7.94347 8.30616 8.58743 9.21253 9.30027 10.71451 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.002346 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.215424 B =11933.089637 C =12391.169645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.581 6.581 11 C -0.121 4.121 12 C 0.110 3.890 13 N -0.570 5.570 14 C 0.510 3.490 15 O -0.530 6.530 16 C 0.514 3.486 17 O -0.516 6.516 18 N -0.594 5.594 19 C 0.041 3.959 20 C 0.048 3.952 21 O -0.380 6.380 22 C 0.081 3.919 23 H 0.069 0.931 24 C -0.143 4.143 25 C 0.064 3.936 26 F -0.221 7.221 27 C 0.082 3.918 28 C 0.091 3.909 29 H 0.271 0.729 30 H 0.381 0.619 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.057 0.943 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 -15.561 5.205 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.390 6.390 11 C -0.159 4.159 12 C -0.013 4.013 13 N -0.300 5.300 14 C 0.292 3.708 15 O -0.411 6.411 16 C 0.297 3.703 17 O -0.391 6.391 18 N -0.329 5.329 19 C -0.081 4.081 20 C -0.029 4.029 21 O -0.299 6.299 22 C 0.022 3.978 23 H 0.087 0.913 24 C -0.181 4.181 25 C 0.009 3.991 26 F -0.202 7.202 27 C -0.041 4.041 28 C -0.030 4.030 29 H 0.081 0.919 30 H 0.231 0.769 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.167 0.833 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.285 -16.088 5.300 18.439 hybrid contribution 0.209 1.449 0.152 1.471 sum -7.076 -14.639 5.451 17.149 Atomic orbital electron populations 1.69689 1.06001 1.28137 1.49445 1.25086 0.95078 0.99826 0.93236 0.86432 0.79520 0.81925 0.78877 1.19950 1.21069 1.19987 1.21414 0.93714 0.89863 1.52551 0.91395 1.19690 0.86538 0.91886 0.81055 1.86138 1.51510 1.57073 1.44240 1.22757 0.97605 0.95092 1.00478 1.22169 0.87409 0.95204 0.96519 1.48723 1.21995 1.10668 1.48639 1.19504 0.82701 0.87614 0.80934 1.90468 1.36838 1.65041 1.48759 1.20413 0.82471 0.89390 0.78000 1.90719 1.36048 1.65900 1.46395 1.47907 1.14943 1.08544 1.61514 1.23573 0.82627 0.99736 1.02145 1.23181 0.99116 0.81432 0.99176 1.87923 1.42655 1.22493 1.76791 1.22340 0.85961 0.90980 0.98485 0.91319 1.22136 0.99786 0.93235 1.02936 1.21935 1.00166 0.77363 0.99606 1.92765 1.97417 1.37334 1.92655 1.22331 0.99585 0.80624 1.01513 1.23545 1.03325 0.75388 1.00698 0.91871 0.76933 0.90256 0.90433 0.91440 0.91361 0.90532 0.83250 0.92489 0.87226 0.88933 0.89457 0.89837 0.90821 0.87805 0.90207 0.88932 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.80 10.69 55.43 0.59 -22.21 16 2 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 3 Si 0.91 19.72 29.54 -169.99 -5.02 14.70 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.46 8.27 -34.44 -0.28 -13.75 16 8 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 9 C 0.25 5.80 0.87 -89.49 -0.08 5.72 16 10 O -0.58 -14.25 13.16 -35.23 -0.46 -14.71 16 11 C -0.12 -2.39 6.15 -24.76 -0.15 -2.54 16 12 C 0.11 2.04 5.49 -3.07 -0.02 2.02 16 13 N -0.57 -11.54 3.33 -171.03 -0.57 -12.11 16 14 C 0.51 9.72 7.77 -11.58 -0.09 9.63 16 15 O -0.53 -10.58 13.46 5.50 0.07 -10.51 16 16 C 0.51 8.52 7.70 -11.58 -0.09 8.43 16 17 O -0.52 -9.08 13.65 5.50 0.08 -9.01 16 18 N -0.59 -7.99 3.01 -172.53 -0.52 -8.51 16 19 C 0.04 0.50 6.16 -3.32 -0.02 0.47 16 20 C 0.05 0.47 7.00 37.53 0.26 0.73 16 21 O -0.38 -3.80 9.93 -35.23 -0.35 -4.15 16 22 C 0.08 0.73 2.77 -26.58 -0.07 0.66 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 C -0.14 -1.03 5.38 -26.73 -0.14 -1.17 16 25 C 0.06 0.47 7.45 37.16 0.28 0.75 16 26 F -0.22 -2.16 17.36 2.25 0.04 -2.12 16 27 C 0.08 0.87 5.94 -3.54 -0.02 0.85 16 28 C 0.09 2.07 5.39 -2.53 -0.01 2.06 16 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.38 9.49 7.56 45.56 0.34 9.84 16 31 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 32 H 0.08 1.47 8.14 -51.92 -0.42 1.04 16 33 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 34 H 0.07 1.28 7.73 -51.93 -0.40 0.87 16 35 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.15 2.17 4.48 -54.03 -0.24 1.93 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.60 7.83 -51.92 -0.41 0.19 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 1.12 7.06 -51.93 -0.37 0.75 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 2.31 7.33 -51.93 -0.38 1.93 16 46 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -28.13 372.10 -7.10 -35.23 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.03 Total: 12.23 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: -0.54 Total: 15.56 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.50 Total: -42.82 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.66 Total: -38.38 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.13 -7.10 -35.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335033538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.086 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds