Wall clock time and date at job start Wed Apr 1 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99866 * 2 1 4 4 H 1.48501 * 109.46988 * 240.00252 * 3 2 1 5 5 H 1.48503 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47216 * 120.00293 * 3 2 1 7 7 C 1.37880 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99782 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.88825 * 62.43377 * 9 7 2 11 11 C 1.55402 * 111.07091 * 186.21677 * 9 7 2 12 12 C 1.54320 * 102.83117 * 153.49075 * 11 9 7 13 13 N 1.47018 * 107.40047 * 337.97166 * 12 11 9 14 14 C 1.34778 * 125.64919 * 178.82723 * 13 12 11 15 15 O 1.21343 * 120.00268 * 180.02562 * 14 13 12 16 16 C 1.49453 * 119.99973 * 0.03275 * 14 13 12 17 17 O 1.21349 * 119.99948 * 6.66792 * 16 14 13 18 18 N 1.34775 * 120.00191 * 186.68025 * 16 14 13 19 19 C 1.47150 * 120.98037 * 7.64968 * 18 16 14 20 20 C 1.53712 * 108.16141 * 129.44076 * 19 18 16 21 21 O 1.42957 * 109.14822 * 52.53461 * 20 19 18 22 22 C 1.42961 * 114.16975 * 297.29206 * 21 20 19 23 23 H 1.08999 * 109.51025 * 302.65398 * 22 21 20 24 24 C 1.52999 * 109.55692 * 182.53271 * 22 21 20 25 25 C 1.52996 * 109.47370 * 65.22548 * 24 22 21 26 26 F 1.39902 * 109.47466 * 180.02562 * 25 24 22 27 27 C 1.47146 * 120.98254 * 187.94087 * 18 16 14 28 28 C 1.47428 * 108.70440 * 358.86820 * 13 12 11 29 29 H 0.96997 * 120.00292 * 0.02562 * 1 2 3 30 30 H 0.96706 * 113.99470 * 297.56837 * 10 9 7 31 31 H 1.08997 * 110.69747 * 35.19738 * 11 9 7 32 32 H 1.09011 * 110.84983 * 271.85003 * 11 9 7 33 33 H 1.09002 * 109.87988 * 218.47956 * 12 11 9 34 34 H 1.08997 * 109.88549 * 97.47109 * 12 11 9 35 35 H 1.09010 * 109.68346 * 249.21740 * 19 18 16 36 36 H 1.08997 * 109.68636 * 9.76620 * 19 18 16 37 37 H 1.08997 * 109.65273 * 292.56864 * 20 19 18 38 38 H 1.09004 * 109.44230 * 172.37213 * 20 19 18 39 39 H 1.08995 * 109.47086 * 185.22803 * 24 22 21 40 40 H 1.09004 * 109.46588 * 305.22550 * 24 22 21 41 41 H 1.09008 * 109.46997 * 299.99986 * 25 24 22 42 42 H 1.08999 * 109.47006 * 59.99994 * 25 24 22 43 43 H 1.08995 * 109.68360 * 350.22643 * 27 18 16 44 44 H 1.08999 * 109.68603 * 110.74642 * 27 18 16 45 45 H 1.08996 * 110.36596 * 142.96603 * 28 13 12 46 46 H 1.08999 * 110.36477 * 265.28697 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4608 -2.6312 -1.1838 11 6 2.2202 -3.7038 0.1559 12 6 1.3262 -4.7807 0.8058 13 7 0.2064 -4.0871 1.4587 14 6 -0.8072 -4.6806 2.1196 15 8 -1.6820 -4.0058 2.6214 16 6 -0.8538 -6.1700 2.2344 17 8 0.0790 -6.8384 1.8400 18 7 -1.9320 -6.7708 2.7757 19 6 -3.1415 -6.0009 3.1071 20 6 -4.3517 -6.7214 2.4916 21 8 -4.3398 -8.0912 2.9005 22 6 -3.1994 -8.8265 2.4504 23 1 -3.1411 -8.7784 1.3631 24 6 -3.3246 -10.2863 2.8912 25 6 -4.5191 -10.9314 2.1857 26 9 -4.6340 -12.2661 2.5892 27 6 -1.9322 -8.2148 3.0587 28 6 0.3754 -2.6347 1.2701 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2253 -1.9558 -1.2759 31 1 3.0523 -3.4463 0.8112 32 1 2.5828 -4.0388 -0.8161 33 1 1.8983 -5.3399 1.5462 34 1 0.9471 -5.4588 0.0412 35 1 -3.2558 -5.9447 4.1897 36 1 -3.0617 -4.9957 2.6933 37 1 -4.2976 -6.6655 1.4044 38 1 -5.2704 -6.2466 2.8360 39 1 -2.4137 -10.8244 2.6291 40 1 -3.4737 -10.3284 3.9702 41 1 -5.4300 -10.3933 2.4479 42 1 -4.3699 -10.8892 1.1068 43 1 -1.0513 -8.6764 2.6127 44 1 -1.9262 -8.3777 4.1364 45 1 -0.5923 -2.1570 1.1166 46 1 0.8834 -2.1971 2.1294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335033538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:42 Heat of formation + Delta-G solvation = -213.239616 kcal Electronic energy + Delta-G solvation = -31360.637837 eV Core-core repulsion = 26778.679363 eV Total energy + Delta-G solvation = -4581.958473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.55531 -42.18465 -40.65872 -39.46936 -38.99678 -36.51343 -35.64059 -34.79070 -34.24487 -31.98639 -30.80456 -29.76670 -29.28174 -27.51385 -25.70577 -25.05433 -23.94204 -22.85099 -22.00667 -21.51864 -20.37016 -19.13720 -18.43904 -18.28985 -17.85014 -17.53457 -17.19363 -16.96861 -16.86924 -16.72712 -16.45217 -16.29207 -16.00807 -15.62827 -15.52422 -15.07259 -14.95258 -14.80743 -14.68965 -14.31010 -14.00841 -13.74565 -13.54074 -13.45519 -13.31665 -13.05095 -12.81970 -12.65191 -12.39345 -12.36360 -12.32250 -12.26948 -12.12684 -12.02502 -11.78325 -11.57896 -11.30111 -11.19627 -10.67709 -10.42636 -10.33260 -9.81919 -9.63184 -8.25783 -6.42113 0.23485 1.08966 1.45030 1.46312 1.53572 1.99664 2.20442 2.39557 2.62047 2.99427 3.03064 3.31623 3.72999 3.75074 3.83745 3.86823 4.00511 4.03625 4.08225 4.12711 4.20095 4.24287 4.29391 4.37344 4.43080 4.59845 4.63249 4.67285 4.72685 4.80733 4.86417 4.91458 4.97194 5.04394 5.06542 5.14897 5.23494 5.31466 5.42179 5.73786 5.80285 6.02413 6.04052 6.23914 6.50132 6.65875 6.82226 7.26315 7.34581 8.79645 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.002346 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.215424 B =11933.089637 C =12391.169645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.234 3.766 10 O -0.587 6.587 11 C -0.116 4.116 12 C 0.118 3.882 13 N -0.580 5.580 14 C 0.503 3.497 15 O -0.544 6.544 16 C 0.517 3.483 17 O -0.528 6.528 18 N -0.586 5.586 19 C 0.039 3.961 20 C 0.054 3.946 21 O -0.381 6.381 22 C 0.085 3.915 23 H 0.070 0.930 24 C -0.136 4.136 25 C 0.062 3.938 26 F -0.234 7.234 27 C 0.079 3.921 28 C 0.107 3.893 29 H 0.271 0.729 30 H 0.375 0.625 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.133 0.867 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 -16.930 5.706 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.004 4.004 13 N -0.311 5.311 14 C 0.287 3.713 15 O -0.425 6.425 16 C 0.299 3.701 17 O -0.405 6.405 18 N -0.319 5.319 19 C -0.082 4.082 20 C -0.023 4.023 21 O -0.300 6.300 22 C 0.026 3.974 23 H 0.088 0.912 24 C -0.174 4.174 25 C 0.007 3.993 26 F -0.216 7.216 27 C -0.042 4.042 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.223 0.777 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.074 0.926 38 H 0.150 0.850 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.320 -17.497 5.818 19.839 hybrid contribution 0.131 1.850 0.035 1.855 sum -7.189 -15.647 5.853 18.187 Atomic orbital electron populations 1.69795 1.06989 1.28594 1.49797 1.25778 0.95798 1.02632 0.92972 0.85524 0.78329 0.78419 0.78859 1.19733 1.21047 1.19519 1.21710 0.93975 0.90958 1.52754 0.91310 1.19901 0.87091 0.93028 0.80648 1.86130 1.51476 1.56809 1.45070 1.22765 0.97376 0.93782 1.01404 1.22154 0.86822 0.94622 0.96766 1.48742 1.23082 1.09673 1.49605 1.20115 0.81942 0.89111 0.80126 1.90487 1.37097 1.66021 1.48942 1.19861 0.83397 0.87880 0.78932 1.90708 1.36743 1.65517 1.47549 1.48009 1.14164 1.09940 1.59836 1.23561 0.83069 0.98867 1.02725 1.23183 0.98751 0.81365 0.98967 1.87940 1.42910 1.22328 1.76838 1.22367 0.84837 0.91687 0.98458 0.91233 1.22089 1.00364 0.91897 1.03012 1.22040 1.00318 0.76488 1.00444 1.92738 1.97477 1.38483 1.92865 1.22596 1.00552 0.78445 1.02635 1.23075 1.01371 0.77005 1.00044 0.91991 0.77662 0.88977 0.89607 0.89738 0.91352 0.89592 0.85641 0.92621 0.84958 0.87685 0.89258 0.89648 0.89500 0.87772 0.88705 0.91886 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.48 10.69 21.45 0.23 -47.25 16 2 C 0.03 1.49 5.29 84.66 0.45 1.94 16 3 Si 0.96 40.43 29.54 68.60 2.03 42.46 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.56 -28.01 8.27 25.60 0.21 -27.80 16 8 H 0.07 3.37 7.79 -2.91 -0.02 3.34 16 9 C 0.23 11.00 0.87 -10.06 -0.01 11.00 16 10 O -0.59 -29.30 13.16 -148.98 -1.96 -31.26 16 11 C -0.12 -4.46 6.15 31.87 0.20 -4.27 16 12 C 0.12 4.31 5.49 86.73 0.48 4.79 16 13 N -0.58 -23.66 3.33 -813.39 -2.71 -26.37 16 14 C 0.50 19.30 7.77 87.27 0.68 19.98 16 15 O -0.54 -22.15 13.46 -3.22 -0.04 -22.20 16 16 C 0.52 16.72 7.70 87.27 0.67 17.39 16 17 O -0.53 -17.94 13.65 -3.24 -0.04 -17.98 16 18 N -0.59 -14.92 3.01 -818.13 -2.47 -17.39 16 19 C 0.04 0.91 6.16 86.50 0.53 1.44 16 20 C 0.05 0.96 7.00 72.22 0.51 1.46 16 21 O -0.38 -6.64 9.93 -148.98 -1.48 -8.12 16 22 C 0.09 1.32 2.77 30.69 0.09 1.40 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 C -0.14 -1.60 5.38 30.59 0.16 -1.43 16 25 C 0.06 0.77 7.45 71.98 0.54 1.31 16 26 F -0.23 -4.18 17.36 44.97 0.78 -3.40 16 27 C 0.08 1.49 5.94 86.36 0.51 2.00 16 28 C 0.11 4.99 5.39 86.85 0.47 5.46 16 29 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 30 H 0.37 19.30 7.56 -74.05 -0.56 18.74 16 31 H 0.09 3.29 8.03 -2.39 -0.02 3.27 16 32 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 33 H 0.08 2.80 7.56 -2.39 -0.02 2.78 16 34 H 0.07 2.49 7.73 -2.39 -0.02 2.47 16 35 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.13 3.64 4.48 -35.56 -0.16 3.48 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.04 7.83 -2.38 -0.02 1.02 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 2.01 7.06 -2.39 -0.02 2.00 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 3.28 7.33 -2.39 -0.02 3.27 16 46 H 0.06 2.71 8.03 -2.39 -0.02 2.69 16 Total: -1.00 -60.05 372.10 0.12 -59.93 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.31 Total: 36.89 kcal Atomic # 6 Polarization: 29.19 SS G_CDS: 5.48 Total: 34.67 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -4.94 Total: -91.00 kcal Atomic # 8 Polarization: -76.03 SS G_CDS: -3.53 Total: -79.56 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -60.05 0.12 -59.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335033538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.306 kcal (2) G-P(sol) polarization free energy of solvation -60.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds