Wall clock time and date at job start Wed Apr 1 2020 02:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48504 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47166 * 300.00407 * 3 2 1 6 6 H 1.48495 * 109.47283 * 60.00264 * 3 2 1 7 7 C 1.37882 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99754 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.78100 * 298.21433 * 9 7 2 11 11 C 1.55159 * 110.71600 * 174.97486 * 9 7 2 12 12 C 1.55132 * 101.48412 * 205.96699 * 11 9 7 13 13 N 1.47423 * 104.72056 * 37.30035 * 12 11 9 14 14 C 1.34776 * 125.65009 * 155.81573 * 13 12 11 15 15 O 1.21342 * 120.00341 * 179.69312 * 14 13 12 16 16 C 1.49451 * 119.99695 * 359.69042 * 14 13 12 17 17 O 1.21347 * 120.00191 * 6.51968 * 16 14 13 18 18 N 1.34781 * 120.00094 * 186.52404 * 16 14 13 19 19 C 1.47158 * 120.97972 * 358.37210 * 18 16 14 20 20 C 1.53292 * 108.38516 * 129.47996 * 19 18 16 21 21 O 1.42963 * 109.22323 * 52.30000 * 20 19 18 22 22 C 1.42964 * 114.17002 * 297.42214 * 21 20 19 23 23 H 1.09003 * 109.51037 * 302.60879 * 22 21 20 24 24 C 1.52993 * 109.51683 * 182.50177 * 22 21 20 25 25 C 1.53006 * 109.47157 * 65.09686 * 24 22 21 26 26 F 1.39898 * 109.47492 * 179.97438 * 25 24 22 27 27 C 1.47166 * 120.94299 * 178.35470 * 18 16 14 28 28 C 1.47023 * 108.70310 * 335.54763 * 13 12 11 29 29 H 0.97003 * 119.99970 * 359.97438 * 1 2 3 30 30 H 0.96699 * 113.99757 * 61.79064 * 10 9 7 31 31 H 1.08995 * 111.00720 * 324.21180 * 11 9 7 32 32 H 1.08998 * 111.00179 * 88.06668 * 11 9 7 33 33 H 1.08992 * 110.50008 * 278.45448 * 12 11 9 34 34 H 1.09004 * 110.33823 * 156.06095 * 12 11 9 35 35 H 1.08994 * 109.68040 * 9.75551 * 19 18 16 36 36 H 1.09003 * 109.71001 * 249.21872 * 19 18 16 37 37 H 1.09001 * 109.51330 * 292.37749 * 20 19 18 38 38 H 1.08997 * 109.55552 * 172.25104 * 20 19 18 39 39 H 1.08997 * 109.47424 * 305.10128 * 24 22 21 40 40 H 1.08999 * 109.47351 * 185.09855 * 24 22 21 41 41 H 1.09007 * 109.46697 * 60.00067 * 25 24 22 42 42 H 1.08994 * 109.47487 * 300.00639 * 25 24 22 43 43 H 1.09003 * 109.64555 * 110.77829 * 27 18 16 44 44 H 1.08997 * 109.72953 * 350.21477 * 27 18 16 45 45 H 1.09010 * 109.87781 * 120.70364 * 28 13 12 46 46 H 1.08995 * 109.88485 * 241.71631 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4509 -2.6227 1.1770 11 6 2.2284 -3.6974 -0.1283 12 6 1.3159 -4.7729 -0.7742 13 7 0.4640 -4.0246 -1.7164 14 6 -0.1422 -4.5380 -2.8052 15 8 -0.8279 -3.8269 -3.5099 16 6 0.0301 -5.9832 -3.1445 17 8 0.6162 -6.7205 -2.3793 18 7 -0.4653 -6.4677 -4.3005 19 6 -1.2102 -5.6011 -5.2277 20 6 -0.6123 -5.7659 -6.6295 21 8 -0.5637 -7.1559 -6.9601 22 6 0.2749 -7.9328 -6.1017 23 1 1.2867 -7.5276 -6.1170 24 6 0.2981 -9.3838 -6.5862 25 6 0.9605 -9.4509 -7.9638 26 9 0.9823 -10.7778 -8.4067 27 6 -0.2764 -7.8791 -4.6722 28 6 0.3801 -2.6269 -1.2682 29 1 -0.4850 0.8401 0.0004 30 1 -0.2289 -1.9404 1.2640 31 1 3.0671 -3.4498 -0.7789 32 1 2.5786 -4.0221 0.8515 33 1 0.7045 -5.2606 -0.0152 34 1 1.9171 -5.5086 -1.3085 35 1 -1.1214 -4.5621 -4.9105 36 1 -2.2605 -5.8927 -5.2399 37 1 0.3960 -5.3522 -6.6462 38 1 -1.2333 -5.2406 -7.3551 39 1 -0.7225 -9.7602 -6.6552 40 1 0.8633 -9.9934 -5.8812 41 1 1.9812 -9.0745 -7.8948 42 1 0.3955 -8.8414 -8.6689 43 1 -1.2324 -8.4009 -4.6277 44 1 0.4307 -8.3483 -3.9882 45 1 0.7592 -1.9646 -2.0466 46 1 -0.6544 -2.3731 -1.0371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335033543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:48 Heat of formation + Delta-G solvation = -188.867990 kcal Electronic energy + Delta-G solvation = -31324.898449 eV Core-core repulsion = 26743.996808 eV Total energy + Delta-G solvation = -4580.901640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.89631 -40.97073 -39.47210 -38.21702 -37.50943 -35.20955 -34.17888 -34.09349 -32.31943 -30.30331 -30.01413 -28.38106 -27.94757 -25.89664 -24.63907 -23.85843 -22.78364 -21.90810 -21.03258 -19.70724 -19.17557 -17.34961 -17.26367 -17.12475 -16.84639 -16.33566 -16.07017 -16.05814 -15.75197 -15.69785 -15.28865 -14.87145 -14.66741 -14.58616 -14.43125 -14.09718 -13.39672 -13.19860 -13.10571 -13.00010 -12.94319 -12.58837 -12.46961 -12.22013 -11.84389 -11.63788 -11.60290 -11.46889 -11.16085 -11.14640 -11.01601 -10.95132 -10.71009 -10.63551 -10.52606 -10.41324 -10.19144 -9.39544 -8.94009 -8.82937 -8.72938 -8.41395 -8.16745 -6.37157 -4.45779 1.59463 2.31348 3.14799 3.24198 3.27552 3.30173 3.37709 3.56508 4.00278 4.20115 4.35227 4.39130 4.48030 4.66305 4.69633 4.78550 4.87790 4.91065 4.99853 5.14327 5.23753 5.32858 5.35383 5.39933 5.50638 5.63372 5.70095 5.71635 5.77575 5.89115 5.93756 6.13091 6.20939 6.42038 6.67187 6.71453 6.73787 6.80808 6.96871 7.10057 7.22841 7.62854 7.65366 7.90279 7.94066 8.26598 8.58742 9.20612 9.29635 10.70692 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.002385 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.085366 B =11735.921143 C =12115.415755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.121 4.121 12 C 0.100 3.900 13 N -0.569 5.569 14 C 0.510 3.490 15 O -0.528 6.528 16 C 0.513 3.487 17 O -0.516 6.516 18 N -0.591 5.591 19 C 0.019 3.981 20 C 0.050 3.950 21 O -0.380 6.380 22 C 0.081 3.919 23 H 0.068 0.932 24 C -0.143 4.143 25 C 0.064 3.936 26 F -0.220 7.220 27 C 0.081 3.919 28 C 0.099 3.901 29 H 0.270 0.730 30 H 0.382 0.618 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.168 0.832 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 -13.829 -12.444 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.159 4.159 12 C -0.022 4.022 13 N -0.300 5.300 14 C 0.293 3.707 15 O -0.410 6.410 16 C 0.297 3.703 17 O -0.391 6.391 18 N -0.325 5.325 19 C -0.102 4.102 20 C -0.027 4.027 21 O -0.299 6.299 22 C 0.022 3.978 23 H 0.086 0.914 24 C -0.181 4.181 25 C 0.009 3.991 26 F -0.202 7.202 27 C -0.041 4.041 28 C -0.022 4.022 29 H 0.080 0.920 30 H 0.232 0.768 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.184 0.816 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.288 -14.369 -12.473 19.030 hybrid contribution -0.039 1.427 -0.001 1.428 sum -0.326 -12.942 -12.473 17.978 Atomic orbital electron populations 1.69697 1.06004 1.27945 1.49680 1.25089 0.95080 0.99855 0.93305 0.86332 0.80087 0.82610 0.77803 1.19553 1.20758 1.20691 1.21535 0.93782 0.89885 1.52254 0.91317 1.19525 0.86485 0.92363 0.80921 1.86138 1.51667 1.56631 1.44682 1.22873 0.97412 0.95000 1.00595 1.22688 0.92882 0.94859 0.91812 1.48770 1.44914 1.13586 1.22680 1.19529 0.81740 0.87466 0.81964 1.90271 1.40909 1.60975 1.48799 1.20335 0.79216 0.89199 0.81561 1.90709 1.40703 1.59511 1.48206 1.47941 1.54286 1.10491 1.19831 1.23931 0.95494 1.01944 0.88818 1.23066 1.01363 0.81796 0.96472 1.87927 1.68204 1.19724 1.54094 1.22339 0.94323 0.91807 0.89283 0.91397 1.22138 1.03684 0.94878 0.97406 1.21933 1.02268 0.78788 0.96068 1.92764 1.98083 1.38383 1.90926 1.22344 1.03071 0.82504 0.96221 1.23306 1.02438 0.77056 0.99372 0.91972 0.76759 0.90363 0.90199 0.91002 0.89856 0.81589 0.90788 0.92584 0.87298 0.89448 0.88931 0.90850 0.89831 0.90202 0.87820 0.90676 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.80 10.98 55.43 0.61 -22.19 16 2 C 0.07 1.76 5.28 -17.82 -0.09 1.66 16 3 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -13.46 8.12 -34.44 -0.28 -13.74 16 8 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 9 C 0.25 5.76 0.85 -89.94 -0.08 5.68 16 10 O -0.58 -14.16 13.08 -35.23 -0.46 -14.62 16 11 C -0.12 -2.37 6.24 -24.46 -0.15 -2.53 16 12 C 0.10 1.84 5.98 -2.41 -0.01 1.83 16 13 N -0.57 -11.39 3.32 -170.89 -0.57 -11.96 16 14 C 0.51 9.53 7.83 -11.59 -0.09 9.44 16 15 O -0.53 -10.29 13.37 5.50 0.07 -10.22 16 16 C 0.51 8.35 7.72 -11.58 -0.09 8.27 16 17 O -0.52 -8.94 13.35 5.50 0.07 -8.86 16 18 N -0.59 -7.83 3.02 -172.77 -0.52 -8.35 16 19 C 0.02 0.23 6.39 -3.53 -0.02 0.21 16 20 C 0.05 0.49 6.98 37.31 0.26 0.75 16 21 O -0.38 -3.78 9.93 -35.23 -0.35 -4.13 16 22 C 0.08 0.72 2.78 -26.58 -0.07 0.64 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 C -0.14 -1.02 5.38 -26.73 -0.14 -1.16 16 25 C 0.06 0.47 7.45 37.16 0.28 0.74 16 26 F -0.22 -2.14 17.36 2.25 0.04 -2.10 16 27 C 0.08 0.85 5.92 -3.52 -0.02 0.83 16 28 C 0.10 2.25 5.23 -3.06 -0.02 2.24 16 29 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.38 9.44 7.47 45.56 0.34 9.78 16 31 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.43 6.33 -51.93 -0.33 1.11 16 35 H 0.17 2.38 3.96 -56.37 -0.22 2.16 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.59 7.83 -51.93 -0.41 0.19 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 1.10 7.09 -51.93 -0.37 0.73 16 45 H 0.07 1.83 7.81 -51.92 -0.41 1.42 16 46 H 0.07 1.81 7.93 -51.93 -0.41 1.40 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -27.92 371.39 -7.06 -34.98 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.99 Total: 12.27 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: -0.54 Total: 14.86 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.48 Total: -42.51 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.66 Total: -37.83 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.92 -7.06 -34.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335033543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.886 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds