Wall clock time and date at job start Wed Apr 1 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47039 * 269.99927 * 3 2 1 5 5 H 1.48496 * 109.47027 * 30.00303 * 3 2 1 6 6 H 1.48502 * 109.46927 * 150.00260 * 3 2 1 7 7 C 1.38660 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99575 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.35757 * 116.99637 * 185.40532 * 9 7 2 11 11 C 1.38961 * 120.02873 * 185.62983 * 10 9 7 12 12 C 1.38132 * 120.08188 * 179.73658 * 11 10 9 13 13 C 1.38181 * 120.14603 * 0.56320 * 12 11 10 14 14 C 1.38987 * 120.05708 * 359.69352 * 13 12 11 15 15 N 1.39722 * 120.03993 * 180.02562 * 14 13 12 16 16 C 1.34778 * 120.00076 * 326.29787 * 15 14 13 17 17 O 1.21379 * 119.99851 * 354.79231 * 16 15 14 18 18 C 1.49356 * 120.00261 * 174.78635 * 16 15 14 19 19 O 1.21358 * 119.99424 * 0.02562 * 18 16 15 20 20 N 1.34774 * 119.99819 * 180.02562 * 18 16 15 21 21 C 1.46504 * 119.99584 * 180.02562 * 20 18 16 22 22 H 1.08997 * 112.84128 * 23.83828 * 21 20 18 23 23 C 1.53773 * 113.59777 * 252.57823 * 21 20 18 24 24 C 1.53506 * 87.10003 * 219.51683 * 23 21 20 25 25 H 1.09000 * 115.86539 * 268.44205 * 24 23 21 26 26 C 1.53380 * 114.29289 * 132.09928 * 24 23 21 27 27 C 1.53507 * 107.41524 * 282.66111 * 26 24 23 28 28 C 1.53572 * 107.19861 * 0.66781 * 27 26 24 29 29 C 1.53918 * 113.60117 * 154.99823 * 21 20 18 30 30 H 1.09003 * 116.10841 * 259.60739 * 29 21 20 31 31 C 1.38716 * 120.03290 * 5.90091 * 10 9 7 32 32 H 0.97002 * 119.99408 * 359.97438 * 1 2 3 33 33 H 1.08002 * 119.95756 * 0.02748 * 11 10 9 34 34 H 1.08003 * 119.92755 * 180.24792 * 12 11 10 35 35 H 1.08000 * 119.97079 * 179.71732 * 13 12 11 36 36 H 0.97002 * 120.00262 * 146.30062 * 15 14 13 37 37 H 0.96992 * 120.00642 * 359.97438 * 20 18 16 38 38 H 1.09000 * 113.61501 * 334.07786 * 23 21 20 39 39 H 1.09004 * 113.61195 * 104.97062 * 23 21 20 40 40 H 1.09006 * 109.85864 * 163.19830 * 26 24 23 41 41 H 1.09004 * 109.96505 * 42.18149 * 26 24 23 42 42 H 1.08996 * 109.89485 * 241.27143 * 27 26 24 43 43 H 1.09003 * 110.03400 * 120.14635 * 27 26 24 44 44 H 1.08993 * 110.12491 * 222.96184 * 28 27 26 45 45 H 1.09005 * 110.12205 * 101.29547 * 28 27 26 46 46 H 1.08003 * 120.06912 * 0.02562 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0693 -3.5044 0.1129 11 6 1.4532 -4.7450 0.0025 12 6 2.2007 -5.9015 0.1123 13 6 3.5610 -5.8292 0.3437 14 6 4.1825 -4.5915 0.4604 15 7 5.5581 -4.5188 0.6939 16 6 6.1649 -5.4593 1.4447 17 8 5.5040 -6.3154 1.9958 18 6 7.6505 -5.4484 1.5986 19 8 8.3111 -4.5922 1.0479 20 7 8.2571 -6.3892 2.3490 21 6 9.7143 -6.3781 2.5003 22 1 10.1493 -5.3924 2.3353 23 6 10.4222 -7.5029 1.7268 24 6 11.3559 -7.6416 2.9373 25 1 12.2691 -7.0475 2.9040 26 6 11.5543 -9.0842 3.4191 27 6 10.2998 -9.4811 4.2098 28 6 9.3466 -8.2773 4.1834 29 6 10.2052 -7.0603 3.7899 30 1 10.4704 -6.3963 4.6127 31 6 3.4349 -3.4277 0.3446 32 1 -0.4849 0.8401 0.0004 33 1 0.3894 -4.8051 -0.1740 34 1 1.7199 -6.8644 0.0221 35 1 4.1419 -6.7352 0.4336 36 1 6.0766 -3.7914 0.3157 37 1 7.7291 -7.0733 2.7894 38 1 9.7947 -8.3778 1.5567 39 1 10.9268 -7.1607 0.8232 40 1 12.4318 -9.1421 4.0632 41 1 11.6784 -9.7485 2.5638 42 1 10.5696 -9.7181 5.2389 43 1 9.8219 -10.3430 3.7440 44 1 8.9087 -8.1240 5.1697 45 1 8.5613 -8.4369 3.4445 46 1 3.9151 -2.4646 0.4355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349272313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:45 Heat of formation + Delta-G solvation = -45.997805 kcal Electronic energy + Delta-G solvation = -28944.408317 eV Core-core repulsion = 24800.471217 eV Total energy + Delta-G solvation = -4143.937100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51208 -40.55321 -39.12818 -38.29348 -36.55729 -35.00301 -34.14388 -32.39917 -32.26676 -29.59326 -29.38343 -28.72940 -26.05247 -25.40937 -25.07766 -23.38925 -21.92538 -21.81453 -20.57095 -19.97507 -19.33458 -18.52335 -18.02671 -17.30127 -17.07111 -16.43095 -16.06981 -15.84428 -15.48131 -15.15147 -15.01530 -14.65863 -14.34215 -14.04115 -13.91793 -13.80298 -13.59163 -13.39522 -13.04921 -12.94496 -12.58432 -12.41467 -11.96154 -11.78813 -11.72250 -11.60323 -11.50751 -11.29792 -11.08679 -10.95117 -10.93137 -10.87274 -10.84630 -10.61804 -10.46831 -9.93493 -9.65756 -9.42554 -9.41450 -8.84005 -7.83514 -7.23761 -6.47574 -4.07346 1.17775 2.07191 2.26161 2.36659 3.10980 3.12769 3.17225 3.17899 3.55917 3.76699 3.94653 3.99280 4.10347 4.33950 4.37155 4.53676 4.66995 4.77938 4.89556 5.00301 5.06884 5.13550 5.14149 5.22287 5.27629 5.37207 5.49033 5.51063 5.61045 5.61486 5.66670 5.78618 5.87743 5.89914 5.93339 5.96179 6.07716 6.13246 6.18019 6.52631 6.71295 6.85936 6.97390 7.07966 7.22122 7.35941 7.44792 7.65838 7.72134 7.95512 8.01052 8.97759 9.66322 10.70116 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.002093 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.273985 B =13376.442036 C =14459.054911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.173 6.173 10 C 0.168 3.832 11 C -0.195 4.195 12 C -0.063 4.063 13 C -0.205 4.205 14 C 0.173 3.827 15 N -0.635 5.635 16 C 0.502 3.498 17 O -0.502 6.502 18 C 0.512 3.488 19 O -0.518 6.518 20 N -0.692 5.692 21 C 0.126 3.874 22 H 0.120 0.880 23 C -0.142 4.142 24 C -0.109 4.109 25 H 0.101 0.899 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.115 4.115 29 C -0.120 4.120 30 H 0.095 0.905 31 C -0.250 4.250 32 H 0.270 0.730 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.419 0.581 37 H 0.413 0.587 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.872 -16.215 6.364 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.077 6.077 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.082 4.082 13 C -0.225 4.225 14 C 0.081 3.919 15 N -0.281 5.281 16 C 0.284 3.716 17 O -0.376 6.376 18 C 0.293 3.707 19 O -0.393 6.393 20 N -0.347 5.347 21 C 0.021 3.979 22 H 0.138 0.862 23 C -0.181 4.181 24 C -0.128 4.128 25 H 0.119 0.881 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.152 4.152 29 C -0.139 4.139 30 H 0.113 0.887 31 C -0.271 4.271 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.256 0.744 37 H 0.252 0.748 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.463 -15.999 6.346 27.512 hybrid contribution 0.538 0.951 0.095 1.097 sum 22.002 -15.048 6.440 27.423 Atomic orbital electron populations 1.70040 1.05942 1.27728 1.45796 1.25292 0.95855 0.98840 0.96463 0.85719 0.78927 0.80084 0.78758 1.19819 1.20235 1.19203 1.21286 0.91714 0.80817 1.53101 0.89159 1.84024 1.33901 1.11383 1.78345 1.19074 0.89400 0.88206 0.92018 1.20288 1.00187 0.89949 1.11035 1.20519 0.93005 0.97042 0.97588 1.20518 0.95298 0.95609 1.11102 1.17397 0.80837 0.94349 0.99344 1.43147 1.08061 1.27718 1.49181 1.20092 0.88361 0.83009 0.80182 1.90783 1.65642 1.36312 1.44901 1.20168 0.88489 0.82153 0.79914 1.90768 1.66144 1.36455 1.45941 1.45889 1.08144 1.30817 1.49814 1.22716 0.78650 1.00153 0.96372 0.86187 1.23399 0.97987 0.99019 0.97647 1.22928 0.97007 0.96682 0.96159 0.88097 1.21815 0.98049 0.95512 0.99676 1.21963 0.95498 0.97858 1.00528 1.21966 0.97886 0.93453 1.01929 1.23674 0.96638 0.97089 0.96501 0.88658 1.20842 0.94422 0.97288 1.14596 0.91966 0.86195 0.86412 0.86346 0.74414 0.74806 0.89341 0.90647 0.91670 0.91537 0.91645 0.91599 0.90974 0.91341 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.83 9.44 30.89 0.29 -10.54 16 8 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 9 O -0.17 -4.88 9.76 0.03 0.00 -4.88 16 10 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 11 C -0.19 -4.09 9.99 -39.35 -0.39 -4.48 16 12 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 13 C -0.20 -3.81 8.65 -39.32 -0.34 -4.15 16 14 C 0.17 3.32 6.27 -83.77 -0.52 2.79 16 15 N -0.64 -10.26 5.32 -10.31 -0.05 -10.31 16 16 C 0.50 7.64 7.62 -11.63 -0.09 7.56 16 17 O -0.50 -8.43 14.18 5.47 0.08 -8.35 16 18 C 0.51 6.70 7.89 -11.63 -0.09 6.61 16 19 O -0.52 -7.68 16.08 5.49 0.09 -7.59 16 20 N -0.69 -6.94 5.21 -53.41 -0.28 -7.22 16 21 C 0.13 1.03 4.07 -67.05 -0.27 0.75 16 22 H 0.12 1.09 7.46 -51.93 -0.39 0.70 16 23 C -0.14 -0.98 7.03 -26.07 -0.18 -1.16 16 24 C -0.11 -0.61 4.79 -89.34 -0.43 -1.04 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 C -0.11 -0.57 6.31 -26.27 -0.17 -0.74 16 27 C -0.12 -0.63 6.77 -26.17 -0.18 -0.81 16 28 C -0.11 -0.69 5.57 -25.89 -0.14 -0.83 16 29 C -0.12 -0.76 5.05 -88.77 -0.45 -1.20 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 C -0.25 -5.41 9.05 -39.20 -0.35 -5.76 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.12 2.09 6.43 -52.49 -0.34 1.76 16 36 H 0.42 6.05 8.30 -40.82 -0.34 5.72 16 37 H 0.41 3.80 5.92 -40.82 -0.24 3.56 16 38 H 0.09 0.62 7.58 -51.93 -0.39 0.23 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.44 5.57 -51.93 -0.29 0.15 16 46 H 0.13 2.83 5.71 -52.48 -0.30 2.53 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -31.90 377.59 -8.75 -40.64 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.93 Total: 10.69 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -4.08 Total: -9.80 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.43 Total: -41.77 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.17 Total: -20.82 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.90 -8.75 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349272313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.355 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds