Wall clock time and date at job start Wed Apr 1 2020 02:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47039 * 269.99927 * 3 2 1 5 5 H 1.48496 * 109.47027 * 30.00303 * 3 2 1 6 6 H 1.48502 * 109.46927 * 150.00260 * 3 2 1 7 7 C 1.38660 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99575 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.35757 * 116.99637 * 185.40532 * 9 7 2 11 11 C 1.38961 * 120.02873 * 185.62983 * 10 9 7 12 12 C 1.38132 * 120.08188 * 179.73658 * 11 10 9 13 13 C 1.38181 * 120.14603 * 0.56320 * 12 11 10 14 14 C 1.38987 * 120.05708 * 359.69352 * 13 12 11 15 15 N 1.39722 * 120.03993 * 180.02562 * 14 13 12 16 16 C 1.34778 * 120.00076 * 326.29787 * 15 14 13 17 17 O 1.21379 * 119.99851 * 354.79231 * 16 15 14 18 18 C 1.49356 * 120.00261 * 174.78635 * 16 15 14 19 19 O 1.21358 * 119.99424 * 0.02562 * 18 16 15 20 20 N 1.34774 * 119.99819 * 180.02562 * 18 16 15 21 21 C 1.46504 * 119.99584 * 180.02562 * 20 18 16 22 22 H 1.08997 * 112.84128 * 23.83828 * 21 20 18 23 23 C 1.53773 * 113.59777 * 252.57823 * 21 20 18 24 24 C 1.53506 * 87.10003 * 219.51683 * 23 21 20 25 25 H 1.09000 * 115.86539 * 268.44205 * 24 23 21 26 26 C 1.53380 * 114.29289 * 132.09928 * 24 23 21 27 27 C 1.53507 * 107.41524 * 282.66111 * 26 24 23 28 28 C 1.53572 * 107.19861 * 0.66781 * 27 26 24 29 29 C 1.53918 * 113.60117 * 154.99823 * 21 20 18 30 30 H 1.09003 * 116.10841 * 259.60739 * 29 21 20 31 31 C 1.38716 * 120.03290 * 5.90091 * 10 9 7 32 32 H 0.97002 * 119.99408 * 359.97438 * 1 2 3 33 33 H 1.08002 * 119.95756 * 0.02748 * 11 10 9 34 34 H 1.08003 * 119.92755 * 180.24792 * 12 11 10 35 35 H 1.08000 * 119.97079 * 179.71732 * 13 12 11 36 36 H 0.97002 * 120.00262 * 146.30062 * 15 14 13 37 37 H 0.96992 * 120.00642 * 359.97438 * 20 18 16 38 38 H 1.09000 * 113.61501 * 334.07786 * 23 21 20 39 39 H 1.09004 * 113.61195 * 104.97062 * 23 21 20 40 40 H 1.09006 * 109.85864 * 163.19830 * 26 24 23 41 41 H 1.09004 * 109.96505 * 42.18149 * 26 24 23 42 42 H 1.08996 * 109.89485 * 241.27143 * 27 26 24 43 43 H 1.09003 * 110.03400 * 120.14635 * 27 26 24 44 44 H 1.08993 * 110.12491 * 222.96184 * 28 27 26 45 45 H 1.09005 * 110.12205 * 101.29547 * 28 27 26 46 46 H 1.08003 * 120.06912 * 0.02562 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0693 -3.5044 0.1129 11 6 1.4532 -4.7450 0.0025 12 6 2.2007 -5.9015 0.1123 13 6 3.5610 -5.8292 0.3437 14 6 4.1825 -4.5915 0.4604 15 7 5.5581 -4.5188 0.6939 16 6 6.1649 -5.4593 1.4447 17 8 5.5040 -6.3154 1.9958 18 6 7.6505 -5.4484 1.5986 19 8 8.3111 -4.5922 1.0479 20 7 8.2571 -6.3892 2.3490 21 6 9.7143 -6.3781 2.5003 22 1 10.1493 -5.3924 2.3353 23 6 10.4222 -7.5029 1.7268 24 6 11.3559 -7.6416 2.9373 25 1 12.2691 -7.0475 2.9040 26 6 11.5543 -9.0842 3.4191 27 6 10.2998 -9.4811 4.2098 28 6 9.3466 -8.2773 4.1834 29 6 10.2052 -7.0603 3.7899 30 1 10.4704 -6.3963 4.6127 31 6 3.4349 -3.4277 0.3446 32 1 -0.4849 0.8401 0.0004 33 1 0.3894 -4.8051 -0.1740 34 1 1.7199 -6.8644 0.0221 35 1 4.1419 -6.7352 0.4336 36 1 6.0766 -3.7914 0.3157 37 1 7.7291 -7.0733 2.7894 38 1 9.7947 -8.3778 1.5567 39 1 10.9268 -7.1607 0.8232 40 1 12.4318 -9.1421 4.0632 41 1 11.6784 -9.7485 2.5638 42 1 10.5696 -9.7181 5.2389 43 1 9.8219 -10.3430 3.7440 44 1 8.9087 -8.1240 5.1697 45 1 8.5613 -8.4369 3.4445 46 1 3.9151 -2.4646 0.4355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349272313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:44 Heat of formation + Delta-G solvation = -66.347984 kcal Electronic energy + Delta-G solvation = -28945.290767 eV Core-core repulsion = 24800.471217 eV Total energy + Delta-G solvation = -4144.819550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.37849 -41.60687 -40.62341 -39.60337 -38.19478 -36.14889 -35.25328 -34.24458 -33.01871 -31.15961 -30.42257 -29.87076 -27.47178 -26.80944 -25.85112 -24.24231 -23.56757 -22.99372 -21.70879 -20.74222 -20.41917 -19.72820 -19.42143 -18.82885 -17.99687 -17.29565 -17.17409 -17.02543 -16.79476 -16.62864 -16.06373 -15.98934 -15.72317 -15.52759 -15.33543 -15.02733 -14.61707 -14.51151 -14.20888 -13.90091 -13.60930 -13.51015 -13.34757 -13.21661 -13.05870 -12.70168 -12.59351 -12.46601 -12.17112 -12.13458 -12.04440 -11.74822 -11.48661 -11.45769 -11.39757 -11.37188 -11.08301 -10.79997 -10.71460 -10.22574 -9.44535 -8.95665 -8.47927 -6.16448 -0.08167 0.57633 0.69422 1.15193 1.35605 1.44364 1.52330 1.97773 2.16809 2.46847 2.80190 3.13335 3.23734 3.26789 3.46211 3.46818 3.61679 3.79240 4.07203 4.21355 4.27428 4.33475 4.34523 4.38243 4.50785 4.56501 4.58191 4.64340 4.70274 4.80793 4.84685 4.93183 4.98475 5.05771 5.09042 5.13688 5.21745 5.24896 5.26571 5.30310 5.37407 5.43295 5.53793 5.59826 5.63203 5.85745 5.99739 6.11324 6.22863 6.58058 6.77626 6.96559 7.74677 8.74659 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.002093 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.273985 B =13376.442036 C =14459.054911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.223 6.223 10 C 0.134 3.866 11 C -0.205 4.205 12 C -0.048 4.048 13 C -0.194 4.194 14 C 0.178 3.822 15 N -0.635 5.635 16 C 0.506 3.494 17 O -0.516 6.516 18 C 0.518 3.482 19 O -0.538 6.538 20 N -0.675 5.675 21 C 0.114 3.886 22 H 0.112 0.888 23 C -0.139 4.139 24 C -0.101 4.101 25 H 0.111 0.889 26 C -0.112 4.112 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.114 4.114 30 H 0.101 0.899 31 C -0.257 4.257 32 H 0.273 0.727 33 H 0.124 0.876 34 H 0.161 0.839 35 H 0.137 0.863 36 H 0.426 0.574 37 H 0.418 0.582 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.656 -18.044 7.083 31.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.129 6.129 10 C 0.083 3.917 11 C -0.225 4.225 12 C -0.066 4.066 13 C -0.215 4.215 14 C 0.084 3.916 15 N -0.281 5.281 16 C 0.288 3.712 17 O -0.391 6.391 18 C 0.298 3.702 19 O -0.415 6.415 20 N -0.329 5.329 21 C 0.010 3.990 22 H 0.130 0.870 23 C -0.178 4.178 24 C -0.120 4.120 25 H 0.129 0.871 26 C -0.149 4.149 27 C -0.158 4.158 28 C -0.155 4.155 29 C -0.134 4.134 30 H 0.119 0.881 31 C -0.278 4.278 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.179 0.821 35 H 0.155 0.845 36 H 0.265 0.735 37 H 0.258 0.742 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 24.308 -17.902 7.084 31.009 hybrid contribution -0.194 1.170 -0.080 1.189 sum 24.114 -16.732 7.004 30.174 Atomic orbital electron populations 1.70179 1.07923 1.28834 1.48485 1.26552 0.96846 1.02643 0.95814 0.84619 0.77794 0.74741 0.79293 1.18725 1.19636 1.17811 1.21766 0.92433 0.81374 1.53345 0.88161 1.83987 1.35433 1.12456 1.81053 1.19610 0.90527 0.88220 0.93367 1.20558 1.00855 0.89873 1.11214 1.20957 0.92747 0.97787 0.95130 1.20889 0.95690 0.95899 1.08992 1.17436 0.82166 0.93771 0.98238 1.43132 1.06926 1.28510 1.49569 1.20488 0.89379 0.82135 0.79204 1.90768 1.66276 1.36732 1.45290 1.19742 0.87181 0.82731 0.80547 1.90772 1.65999 1.37496 1.47222 1.45943 1.09106 1.29639 1.48204 1.22979 0.77171 1.00447 0.98386 0.87042 1.23384 0.98084 0.98257 0.98053 1.22926 0.96917 0.97284 0.94853 0.87094 1.21821 0.98283 0.94941 0.99898 1.21969 0.95369 0.97475 1.00982 1.21996 0.97933 0.93660 1.01867 1.23686 0.96773 0.97004 0.95890 0.88079 1.20846 0.93909 0.98115 1.14935 0.91783 0.85830 0.82142 0.84518 0.73511 0.74164 0.89305 0.90824 0.90804 0.91308 0.91084 0.91460 0.90761 0.91840 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.68 13.67 21.62 0.30 -55.39 16 2 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 3 Si 1.02 42.63 29.55 68.60 2.03 44.66 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.41 -23.74 9.44 67.92 0.64 -23.10 16 8 H 0.10 5.29 5.30 -2.91 -0.02 5.27 16 9 O -0.22 -13.22 9.76 -22.81 -0.22 -13.44 16 10 C 0.13 6.62 6.64 22.56 0.15 6.77 16 11 C -0.21 -8.59 9.99 22.42 0.22 -8.37 16 12 C -0.05 -1.63 10.03 22.23 0.22 -1.40 16 13 C -0.19 -6.76 8.65 22.44 0.19 -6.56 16 14 C 0.18 6.61 6.27 38.20 0.24 6.85 16 15 N -0.64 -19.72 5.32 -304.88 -1.62 -21.34 16 16 C 0.51 14.54 7.62 87.24 0.66 15.20 16 17 O -0.52 -16.18 14.18 -3.34 -0.05 -16.23 16 18 C 0.52 12.78 7.89 87.24 0.69 13.47 16 19 O -0.54 -15.31 16.08 -3.27 -0.05 -15.37 16 20 N -0.68 -12.37 5.21 -441.25 -2.30 -14.67 16 21 C 0.11 1.66 4.07 45.56 0.19 1.85 16 22 H 0.11 1.88 7.46 -2.39 -0.02 1.86 16 23 C -0.14 -1.65 7.03 31.02 0.22 -1.43 16 24 C -0.10 -0.89 4.79 -9.96 -0.05 -0.93 16 25 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 26 C -0.11 -0.83 6.31 30.89 0.19 -0.64 16 27 C -0.12 -0.97 6.77 30.96 0.21 -0.76 16 28 C -0.12 -1.15 5.57 31.14 0.17 -0.97 16 29 C -0.11 -1.19 5.05 -9.60 -0.05 -1.24 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 C -0.26 -11.25 9.05 22.52 0.20 -11.05 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 34 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 35 H 0.14 4.34 6.43 -2.91 -0.02 4.33 16 36 H 0.43 11.98 8.30 -92.71 -0.77 11.21 16 37 H 0.42 6.87 5.92 -92.71 -0.55 6.33 16 38 H 0.09 1.06 7.58 -2.39 -0.02 1.05 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.07 0.50 8.14 -2.38 -0.02 0.49 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 0.68 5.57 -2.38 -0.01 0.67 16 46 H 0.13 5.58 5.71 -2.91 -0.02 5.57 16 Total: -1.00 -71.51 377.59 2.39 -69.12 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.27 Total: 35.67 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.58 Total: -13.02 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.62 Total: -91.40 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.32 Total: -45.04 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.51 2.39 -69.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349272313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.775 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds