Wall clock time and date at job start Wed Apr 1 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35252 * 126.06644 * 2 1 4 4 C 1.40397 * 107.86394 * 180.13985 * 3 2 1 5 5 N 1.40193 * 125.97036 * 179.82983 * 4 3 2 6 6 C 1.34777 * 120.00312 * 359.71015 * 5 4 3 7 7 O 1.21592 * 119.99576 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00490 * 180.02562 * 6 5 4 9 9 C 1.47422 * 125.64527 * 0.02992 * 8 6 5 10 10 C 1.54917 * 104.83074 * 204.09182 * 9 8 6 11 11 C 1.55158 * 101.57978 * 322.98980 * 10 9 8 12 12 O 1.42904 * 110.71691 * 276.95838 * 11 10 9 13 13 C 1.52998 * 110.71872 * 153.86699 * 11 10 9 14 14 F 1.39898 * 109.46994 * 179.97438 * 13 11 10 15 15 F 1.39908 * 109.47245 * 299.99901 * 13 11 10 16 16 C 1.47020 * 125.65281 * 179.97438 * 8 6 5 17 17 N 1.31208 * 108.05622 * 359.56382 * 4 3 2 18 18 N 1.34957 * 126.07676 * 179.65786 * 2 1 3 19 19 C 1.46506 * 125.97222 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.46781 * 270.00055 * 19 18 2 21 21 H 1.08004 * 120.00261 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99751 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00046 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99857 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46974 * 59.99876 * 24 22 20 26 26 H 1.48498 * 109.46949 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47222 * 299.99959 * 24 22 20 28 28 H 1.09001 * 109.47141 * 270.34198 * 1 2 3 29 29 H 1.08997 * 109.47386 * 30.34667 * 1 2 3 30 30 H 1.08997 * 109.46541 * 150.34636 * 1 2 3 31 31 H 1.07999 * 126.06492 * 359.96185 * 3 2 1 32 32 H 0.97002 * 120.00127 * 179.71798 * 5 4 3 33 33 H 1.08998 * 110.36873 * 85.25268 * 9 8 6 34 34 H 1.09005 * 110.36491 * 322.92676 * 9 8 6 35 35 H 1.08998 * 111.00524 * 81.06438 * 10 9 8 36 36 H 1.08996 * 111.00376 * 204.87436 * 10 9 8 37 37 H 0.96704 * 113.99457 * 179.97438 * 12 11 10 38 38 H 1.09005 * 109.47280 * 59.99527 * 13 11 10 39 39 H 1.09000 * 109.88493 * 59.55540 * 16 8 6 40 40 H 1.09003 * 109.87996 * 298.39630 * 16 8 6 41 41 H 1.08994 * 109.47364 * 29.99702 * 19 18 2 42 42 H 1.08994 * 109.47100 * 150.00623 * 19 18 2 43 43 H 0.96998 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0933 0.0000 4 6 3.6370 0.6547 -0.0033 5 7 4.7736 1.4753 -0.0077 6 6 4.6369 2.8161 -0.0151 7 8 3.5276 3.3140 -0.0174 8 7 5.7296 3.6051 -0.0198 9 6 7.1274 3.1367 -0.0184 10 6 7.9382 4.3101 0.5863 11 6 7.1969 5.5382 -0.0050 12 8 7.6625 5.8218 -1.3259 13 6 7.3659 6.7599 0.9004 14 9 6.6891 7.8502 0.3433 15 9 6.8381 6.4796 2.1654 16 6 5.7250 5.0752 -0.0285 17 7 3.6337 -0.6573 0.0044 18 7 2.3017 -1.0907 0.0065 19 6 1.8502 -2.4845 0.0154 20 6 1.6959 -2.9534 1.4392 21 1 1.9129 -2.2807 2.2559 22 6 1.2787 -4.2416 1.6994 23 7 1.0150 -5.0608 0.7050 24 14 1.0881 -4.8231 3.4644 25 1 0.0874 -3.9745 4.1598 26 1 0.6303 -6.2357 3.4734 27 1 2.3945 -4.7212 4.1629 28 1 -0.3633 0.0061 1.0276 29 1 -0.3634 0.8868 -0.5192 30 1 -0.3632 -0.8931 -0.5084 31 1 1.9719 2.1212 -0.0006 32 1 5.6586 1.0782 -0.0056 33 1 7.4596 2.9307 -1.0359 34 1 7.2285 2.2462 0.6021 35 1 7.8798 4.3053 1.6747 36 1 8.9754 4.2811 0.2528 37 1 7.2303 6.5810 -1.7407 38 1 8.4253 6.9993 0.9936 39 1 5.2046 5.4496 0.8530 40 1 5.2363 5.4391 -0.9323 41 1 0.8914 -2.5590 -0.4976 42 1 2.5847 -3.1076 -0.4947 43 1 0.7211 -5.9669 0.8880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414435718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:35 Heat of formation + Delta-G solvation = -86.980218 kcal Electronic energy + Delta-G solvation = -30067.943730 eV Core-core repulsion = 25400.292721 eV Total energy + Delta-G solvation = -4667.651009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.60723 -47.59471 -40.94100 -40.18585 -38.67754 -35.93586 -34.83935 -33.37151 -31.93622 -31.25121 -30.68507 -29.75043 -27.12662 -26.38391 -26.14176 -23.89010 -22.92931 -21.52707 -20.99035 -19.72988 -19.41736 -18.82977 -18.01204 -17.77042 -17.53553 -16.67584 -16.32076 -16.17556 -15.76675 -15.48569 -15.02317 -14.75784 -14.61899 -14.25406 -14.22965 -14.09641 -14.02067 -13.88426 -13.42146 -13.04862 -12.86252 -12.61571 -12.50003 -12.45408 -12.26341 -12.15782 -12.01280 -11.64923 -11.57118 -11.37748 -11.10033 -10.80426 -10.74953 -10.46607 -10.24262 -10.02982 -9.67479 -9.53994 -8.96689 -8.62813 -7.90589 -7.39918 -6.24126 -4.31684 2.11531 2.62811 2.93620 3.06866 3.17891 3.24184 3.27824 3.31399 3.40622 3.50167 3.55888 3.77729 3.82174 4.10715 4.22802 4.32201 4.40189 4.63840 4.78942 5.01310 5.09473 5.15220 5.21090 5.27937 5.41305 5.46917 5.71743 5.77887 5.94753 6.14032 6.25057 6.47510 6.61329 6.64193 6.76851 6.91267 7.04299 7.10656 7.51133 7.68380 7.85915 7.90750 8.08217 8.52361 8.67967 8.76765 9.34417 10.83058 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.021522 B = 0.002133 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.692031 B =13122.032300 C =13385.359860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.281 3.719 5 N -0.640 5.640 6 C 0.733 3.267 7 O -0.560 6.560 8 N -0.632 5.632 9 C 0.100 3.900 10 C -0.116 4.116 11 C 0.072 3.928 12 O -0.528 6.528 13 C 0.247 3.753 14 F -0.200 7.200 15 F -0.191 7.191 16 C 0.109 3.891 17 N -0.323 5.323 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.275 1.275 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.389 0.611 38 H 0.125 0.875 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.780 22.963 -2.453 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.028 3.972 5 N -0.290 5.290 6 C 0.435 3.565 7 O -0.435 6.435 8 N -0.372 5.372 9 C -0.023 4.023 10 C -0.154 4.154 11 C 0.029 3.971 12 O -0.336 6.336 13 C 0.193 3.807 14 F -0.181 7.181 15 F -0.173 7.173 16 C -0.015 4.015 17 N -0.153 5.153 18 N -0.100 5.100 19 C 0.142 3.858 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.177 0.823 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.239 0.761 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.843 21.411 -2.376 26.161 hybrid contribution -0.403 0.591 0.896 1.146 sum 14.440 22.002 -1.480 26.358 Atomic orbital electron populations 1.20330 0.87882 1.02807 1.03162 1.21055 0.94897 0.87129 1.00888 1.21225 0.89667 0.99816 1.21293 1.18640 0.86451 0.89267 1.02842 1.41335 1.07710 1.03399 1.76508 1.15015 0.83140 0.80261 0.78122 1.90891 1.22691 1.73352 1.56535 1.47257 1.04833 1.05758 1.79357 1.22339 0.80699 0.97410 1.01827 1.22872 1.00334 0.90814 1.01388 1.23176 0.95486 0.93879 0.84545 1.86621 1.66169 1.54440 1.26320 1.22496 0.95460 0.84320 0.78454 1.93008 1.83164 1.56716 1.85261 1.93034 1.88864 1.93742 1.41634 1.22311 0.94797 0.80319 1.04103 1.77244 0.99981 1.08205 1.29895 1.48968 1.00860 1.07768 1.52429 1.19674 0.95953 0.71333 0.98881 1.21290 1.46817 0.97946 0.91370 0.91816 1.24924 0.94692 0.96036 0.98120 1.69906 1.44907 1.06978 1.31229 0.86413 0.78797 0.77641 0.83818 1.19935 1.20967 1.20007 0.90428 0.90823 0.90871 0.82281 0.75907 0.90201 0.89842 0.87968 0.87689 0.76113 0.85813 0.89720 0.89988 0.92789 0.93037 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.11 36.01 0.36 -1.10 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -6.14 9.52 -39.83 -0.38 -6.52 16 4 C 0.28 5.90 8.11 -154.37 -1.25 4.65 16 5 N -0.64 -10.50 5.41 -15.51 -0.08 -10.58 16 6 C 0.73 11.64 8.46 -86.92 -0.74 10.91 16 7 O -0.56 -10.77 13.80 5.29 0.07 -10.70 16 8 N -0.63 -7.17 3.33 -176.24 -0.59 -7.76 16 9 C 0.10 0.76 6.57 -2.53 -0.02 0.74 16 10 C -0.12 -0.61 6.22 -24.58 -0.15 -0.76 16 11 C 0.07 0.44 0.96 -88.79 -0.09 0.35 16 12 O -0.53 -2.95 13.11 -35.23 -0.46 -3.41 16 13 C 0.25 1.31 4.65 37.16 0.17 1.49 16 14 F -0.20 -1.34 16.79 2.25 0.04 -1.30 16 15 F -0.19 -1.49 15.77 2.25 0.04 -1.46 16 16 C 0.11 1.03 6.06 -3.07 -0.02 1.01 16 17 N -0.32 -7.56 12.59 31.44 0.40 -7.16 16 18 N -0.32 -7.65 3.59 -58.33 -0.21 -7.86 16 19 C 0.26 6.71 5.99 -5.19 -0.03 6.67 16 20 C -0.54 -14.86 9.39 -34.44 -0.32 -15.18 16 21 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 24 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 31 H 0.16 3.34 5.91 -52.49 -0.31 3.03 16 32 H 0.41 5.42 7.30 -40.82 -0.30 5.12 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.55 7.30 -51.93 -0.38 0.18 16 35 H 0.10 0.49 7.55 -51.93 -0.39 0.10 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.39 1.09 8.65 45.56 0.39 1.49 16 38 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.90 7.12 -51.93 -0.37 0.53 16 40 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 42 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -34.92 367.93 -7.25 -42.17 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.59 Total: 5.39 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.12 Total: 5.36 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.25 Total: -57.79 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.39 Total: -14.11 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.76 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.92 -7.25 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414435718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.808 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds