Wall clock time and date at job start Wed Apr 1 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35252 * 126.06644 * 2 1 4 4 C 1.40397 * 107.86394 * 180.13985 * 3 2 1 5 5 N 1.40193 * 125.97036 * 179.82983 * 4 3 2 6 6 C 1.34777 * 120.00312 * 359.71015 * 5 4 3 7 7 O 1.21592 * 119.99576 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00490 * 180.02562 * 6 5 4 9 9 C 1.47422 * 125.64527 * 0.02992 * 8 6 5 10 10 C 1.54917 * 104.83074 * 204.09182 * 9 8 6 11 11 C 1.55158 * 101.57978 * 322.98980 * 10 9 8 12 12 O 1.42904 * 110.71691 * 276.95838 * 11 10 9 13 13 C 1.52998 * 110.71872 * 153.86699 * 11 10 9 14 14 F 1.39898 * 109.46994 * 179.97438 * 13 11 10 15 15 F 1.39908 * 109.47245 * 299.99901 * 13 11 10 16 16 C 1.47020 * 125.65281 * 179.97438 * 8 6 5 17 17 N 1.31208 * 108.05622 * 359.56382 * 4 3 2 18 18 N 1.34957 * 126.07676 * 179.65786 * 2 1 3 19 19 C 1.46506 * 125.97222 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.46781 * 270.00055 * 19 18 2 21 21 H 1.08004 * 120.00261 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99751 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00046 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99857 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46974 * 59.99876 * 24 22 20 26 26 H 1.48498 * 109.46949 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47222 * 299.99959 * 24 22 20 28 28 H 1.09001 * 109.47141 * 270.34198 * 1 2 3 29 29 H 1.08997 * 109.47386 * 30.34667 * 1 2 3 30 30 H 1.08997 * 109.46541 * 150.34636 * 1 2 3 31 31 H 1.07999 * 126.06492 * 359.96185 * 3 2 1 32 32 H 0.97002 * 120.00127 * 179.71798 * 5 4 3 33 33 H 1.08998 * 110.36873 * 85.25268 * 9 8 6 34 34 H 1.09005 * 110.36491 * 322.92676 * 9 8 6 35 35 H 1.08998 * 111.00524 * 81.06438 * 10 9 8 36 36 H 1.08996 * 111.00376 * 204.87436 * 10 9 8 37 37 H 0.96704 * 113.99457 * 179.97438 * 12 11 10 38 38 H 1.09005 * 109.47280 * 59.99527 * 13 11 10 39 39 H 1.09000 * 109.88493 * 59.55540 * 16 8 6 40 40 H 1.09003 * 109.87996 * 298.39630 * 16 8 6 41 41 H 1.08994 * 109.47364 * 29.99702 * 19 18 2 42 42 H 1.08994 * 109.47100 * 150.00623 * 19 18 2 43 43 H 0.96998 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0933 0.0000 4 6 3.6370 0.6547 -0.0033 5 7 4.7736 1.4753 -0.0077 6 6 4.6369 2.8161 -0.0151 7 8 3.5276 3.3140 -0.0174 8 7 5.7296 3.6051 -0.0198 9 6 7.1274 3.1367 -0.0184 10 6 7.9382 4.3101 0.5863 11 6 7.1969 5.5382 -0.0050 12 8 7.6625 5.8218 -1.3259 13 6 7.3659 6.7599 0.9004 14 9 6.6891 7.8502 0.3433 15 9 6.8381 6.4796 2.1654 16 6 5.7250 5.0752 -0.0285 17 7 3.6337 -0.6573 0.0044 18 7 2.3017 -1.0907 0.0065 19 6 1.8502 -2.4845 0.0154 20 6 1.6959 -2.9534 1.4392 21 1 1.9129 -2.2807 2.2559 22 6 1.2787 -4.2416 1.6994 23 7 1.0150 -5.0608 0.7050 24 14 1.0881 -4.8231 3.4644 25 1 0.0874 -3.9745 4.1598 26 1 0.6303 -6.2357 3.4734 27 1 2.3945 -4.7212 4.1629 28 1 -0.3633 0.0061 1.0276 29 1 -0.3634 0.8868 -0.5192 30 1 -0.3632 -0.8931 -0.5084 31 1 1.9719 2.1212 -0.0006 32 1 5.6586 1.0782 -0.0056 33 1 7.4596 2.9307 -1.0359 34 1 7.2285 2.2462 0.6021 35 1 7.8798 4.3053 1.6747 36 1 8.9754 4.2811 0.2528 37 1 7.2303 6.5810 -1.7407 38 1 8.4253 6.9993 0.9936 39 1 5.2046 5.4496 0.8530 40 1 5.2363 5.4391 -0.9323 41 1 0.8914 -2.5590 -0.4976 42 1 2.5847 -3.1076 -0.4947 43 1 0.7211 -5.9669 0.8880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414435718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:34 Heat of formation + Delta-G solvation = -112.172683 kcal Electronic energy + Delta-G solvation = -30069.036157 eV Core-core repulsion = 25400.292721 eV Total energy + Delta-G solvation = -4668.743436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.08286 -48.08665 -42.39010 -41.38294 -39.59893 -36.64980 -36.37775 -35.30415 -33.21832 -32.69494 -32.11193 -30.37093 -28.69986 -27.90264 -27.28949 -25.07555 -24.38548 -22.62715 -21.75124 -21.26060 -20.73326 -19.38852 -19.09161 -18.76866 -18.25106 -18.11161 -17.73911 -17.18482 -17.16058 -16.50760 -16.37605 -16.04002 -15.86626 -15.44049 -15.20928 -14.79915 -14.70286 -14.61705 -14.46282 -14.35194 -14.26875 -13.82992 -13.73776 -13.57183 -13.47417 -13.16617 -13.13471 -12.95696 -12.84789 -12.65867 -12.51708 -12.24403 -12.14409 -12.05896 -11.62166 -11.39915 -11.27875 -11.15062 -10.72896 -9.96810 -9.58081 -9.10091 -8.32197 -6.49888 0.90753 1.00540 1.38533 1.40069 1.48864 1.58918 1.90796 2.29311 2.34530 2.50156 2.73068 2.83184 2.97440 2.99753 3.16988 3.29335 3.75565 3.82533 3.97802 4.11416 4.15016 4.23731 4.37297 4.45671 4.46739 4.61807 4.69157 4.71535 4.81873 4.88950 4.93612 4.97031 4.99229 5.04490 5.14378 5.33131 5.53934 5.72189 5.81496 5.91874 6.25675 6.45853 6.53636 6.62650 7.03545 7.20833 7.27081 8.73546 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.021522 B = 0.002133 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.692031 B =13122.032300 C =13385.359860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.089 3.911 3 C -0.299 4.299 4 C 0.291 3.709 5 N -0.631 5.631 6 C 0.728 3.272 7 O -0.599 6.599 8 N -0.625 5.625 9 C 0.089 3.911 10 C -0.108 4.108 11 C 0.085 3.915 12 O -0.531 6.531 13 C 0.246 3.754 14 F -0.210 7.210 15 F -0.207 7.207 16 C 0.099 3.901 17 N -0.356 5.356 18 N -0.342 5.342 19 C 0.275 3.725 20 C -0.554 4.554 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.272 1.272 27 H -0.275 1.275 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.164 0.836 32 H 0.420 0.580 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.401 0.599 38 H 0.166 0.834 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.025 0.975 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.284 24.187 -1.709 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.330 4.330 4 C 0.036 3.964 5 N -0.283 5.283 6 C 0.429 3.571 7 O -0.477 6.477 8 N -0.363 5.363 9 C -0.032 4.032 10 C -0.146 4.146 11 C 0.042 3.958 12 O -0.340 6.340 13 C 0.192 3.808 14 F -0.191 7.191 15 F -0.189 7.189 16 C -0.025 4.025 17 N -0.187 5.187 18 N -0.125 5.125 19 C 0.157 3.843 20 C -0.592 4.592 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.191 1.191 26 H -0.197 1.197 27 H -0.200 1.200 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.257 0.743 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.151 0.849 37 H 0.252 0.748 38 H 0.183 0.817 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.408 22.681 -1.649 28.042 hybrid contribution -0.802 0.344 0.585 1.051 sum 15.605 23.025 -1.064 27.835 Atomic orbital electron populations 1.20469 0.85274 1.04231 1.03978 1.21721 0.96659 0.86368 0.99362 1.21374 0.89987 0.99838 1.21773 1.18915 0.87892 0.88957 1.00660 1.41296 1.07176 1.03439 1.76403 1.15200 0.83823 0.80062 0.77980 1.90847 1.24682 1.73889 1.58263 1.47296 1.05305 1.06339 1.77344 1.22687 0.78601 0.98987 1.02973 1.22935 1.01156 0.88793 1.01675 1.23037 0.92910 0.94633 0.85229 1.86608 1.66035 1.55281 1.26039 1.22872 0.97118 0.83504 0.77296 1.92991 1.83623 1.57147 1.85362 1.93005 1.89298 1.93837 1.42740 1.22525 0.97698 0.79072 1.03157 1.77165 1.00092 1.09456 1.31979 1.48786 1.01612 1.07542 1.54528 1.19257 0.94966 0.72293 0.97807 1.21407 1.47652 0.98384 0.91746 0.93261 1.25725 0.93933 0.95855 1.02262 1.69989 1.44999 1.07399 1.33197 0.85419 0.78745 0.77678 0.78728 1.19090 1.19706 1.20041 0.89787 0.87658 0.91114 0.81909 0.74250 0.89328 0.88860 0.87306 0.84873 0.74755 0.81736 0.91225 0.90566 0.92930 0.95665 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.81 10.11 71.24 0.72 -2.09 16 2 C 0.09 3.89 6.92 41.39 0.29 4.18 16 3 C -0.30 -12.84 9.52 22.11 0.21 -12.63 16 4 C 0.29 12.36 8.11 133.31 1.08 13.44 16 5 N -0.63 -20.69 5.41 -321.24 -1.74 -22.43 16 6 C 0.73 23.09 8.46 179.05 1.51 24.61 16 7 O -0.60 -23.39 13.80 -4.00 -0.06 -23.44 16 8 N -0.62 -13.65 3.33 -829.75 -2.76 -16.41 16 9 C 0.09 1.15 6.57 86.86 0.57 1.72 16 10 C -0.11 -0.79 6.22 31.99 0.20 -0.59 16 11 C 0.09 0.83 0.96 -9.61 -0.01 0.82 16 12 O -0.53 -4.46 13.11 -148.98 -1.95 -6.41 16 13 C 0.25 1.99 4.65 71.98 0.33 2.33 16 14 F -0.21 -2.45 16.79 44.97 0.75 -1.70 16 15 F -0.21 -2.90 15.77 44.97 0.71 -2.19 16 16 C 0.10 1.80 6.06 86.73 0.53 2.33 16 17 N -0.36 -17.11 12.59 -54.44 -0.69 -17.80 16 18 N -0.34 -16.93 3.59 -338.44 -1.22 -18.14 16 19 C 0.28 14.73 5.99 85.63 0.51 15.25 16 20 C -0.55 -31.30 9.39 25.60 0.24 -31.06 16 21 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 22 C 0.02 1.28 5.46 84.66 0.46 1.74 16 23 N -0.92 -52.03 13.29 21.45 0.28 -51.74 16 24 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.07 2.46 7.07 -2.39 -0.02 2.45 16 31 H 0.16 6.91 5.91 -2.91 -0.02 6.89 16 32 H 0.42 11.00 7.30 -92.71 -0.68 10.32 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.04 7.30 -2.38 -0.02 1.03 16 35 H 0.11 0.71 7.55 -2.39 -0.02 0.70 16 36 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.40 1.35 8.65 -74.05 -0.64 0.71 16 38 H 0.17 0.07 8.14 -2.38 -0.02 0.05 16 39 H 0.07 1.49 7.12 -2.39 -0.02 1.47 16 40 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 41 H 0.05 2.78 7.04 -2.39 -0.02 2.76 16 42 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -77.01 367.93 1.79 -75.22 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.23 Total: 19.74 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.65 Total: 20.04 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -6.11 Total: -126.52 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -2.01 Total: -29.86 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 1.46 Total: -3.89 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -77.01 1.79 -75.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414435718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.951 kcal (2) G-P(sol) polarization free energy of solvation -77.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds