Wall clock time and date at job start Wed Apr 1 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35234 * 126.07302 * 2 1 4 4 C 1.40396 * 107.86764 * 180.02562 * 3 2 1 5 5 N 1.40200 * 125.97280 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99970 * 359.97438 * 5 4 3 7 7 O 1.21593 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 180.27511 * 6 5 4 9 9 C 1.47424 * 125.65218 * 359.42575 * 8 6 5 10 10 C 1.55124 * 104.72581 * 155.81636 * 9 8 6 11 11 C 1.55157 * 101.48746 * 37.28923 * 10 9 8 12 12 O 1.42900 * 110.71805 * 82.70019 * 11 10 9 13 13 C 1.53001 * 110.71973 * 205.97207 * 11 10 9 14 14 F 1.39902 * 109.47243 * 294.97455 * 13 11 10 15 15 F 1.39899 * 109.47245 * 54.98045 * 13 11 10 16 16 C 1.47028 * 125.64541 * 179.72603 * 8 6 5 17 17 N 1.31210 * 108.05783 * 0.24756 * 4 3 2 18 18 N 1.34968 * 126.06469 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.97973 * 359.97438 * 18 2 1 20 20 C 1.50701 * 109.47000 * 89.99798 * 19 18 2 21 21 H 1.08005 * 120.00050 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99933 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99650 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46867 * 60.00551 * 24 22 20 26 26 H 1.48495 * 109.47277 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47305 * 300.00538 * 24 22 20 28 28 H 1.08994 * 109.47640 * 89.96622 * 1 2 3 29 29 H 1.08999 * 109.47525 * 209.97172 * 1 2 3 30 30 H 1.09002 * 109.46462 * 329.97214 * 1 2 3 31 31 H 1.08005 * 126.06460 * 0.03079 * 3 2 1 32 32 H 0.97000 * 120.00293 * 180.02562 * 5 4 3 33 33 H 1.09007 * 110.36232 * 274.74001 * 9 8 6 34 34 H 1.09000 * 110.36555 * 37.06212 * 9 8 6 35 35 H 1.09004 * 111.18844 * 279.18730 * 10 9 8 36 36 H 1.08997 * 110.94432 * 155.28923 * 10 9 8 37 37 H 0.96703 * 114.00171 * 185.02393 * 12 11 10 38 38 H 1.09008 * 109.46770 * 174.97713 * 13 11 10 39 39 H 1.09003 * 109.88466 * 300.44286 * 16 8 6 40 40 H 1.08995 * 109.88041 * 61.60769 * 16 8 6 41 41 H 1.08999 * 109.47033 * 209.99909 * 19 18 2 42 42 H 1.09004 * 109.46969 * 330.00016 * 19 18 2 43 43 H 0.97000 * 119.99611 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6544 -0.0006 5 7 4.7738 1.4750 -0.0013 6 6 4.6371 2.8158 -0.0020 7 8 3.5278 3.3138 -0.0015 8 7 5.7299 3.6045 -0.0082 9 6 7.1278 3.1361 -0.0028 10 6 7.9371 4.3028 -0.6274 11 6 7.1974 5.5373 -0.0473 12 8 7.6633 5.8324 1.2709 13 6 7.3642 6.7493 -0.9661 14 9 8.7112 7.1258 -1.0016 15 9 6.9383 6.4182 -2.2569 16 6 5.7255 5.0748 -0.0154 17 7 3.6336 -0.6577 -0.0063 18 7 2.3016 -1.0910 -0.0005 19 6 1.8500 -2.4847 -0.0006 20 6 1.6946 -2.9622 -1.4214 21 1 1.9110 -2.2945 -2.2423 22 6 1.2771 -4.2519 -1.6735 23 7 1.0140 -5.0650 -0.6739 24 14 1.0837 -4.8437 -3.4346 25 1 2.3892 -4.7458 -4.1358 26 1 0.6261 -6.2563 -3.4347 27 1 0.0819 -3.9992 -4.1335 28 1 -0.3634 0.0006 -1.0276 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3632 0.8898 0.5143 31 1 1.9721 2.1210 0.0005 32 1 5.6587 1.0777 -0.0021 33 1 7.4597 2.9448 1.0177 34 1 7.2289 2.2368 -0.6104 35 1 7.8759 4.2865 -1.7156 36 1 8.9752 4.2781 -0.2962 37 1 7.1802 6.5470 1.7081 38 1 6.7653 7.5776 -0.5872 39 1 5.2030 5.4396 -0.8998 40 1 5.2389 5.4484 0.8855 41 1 2.5848 -3.1047 0.5129 42 1 0.8915 -2.5560 0.5136 43 1 0.7200 -5.9722 -0.8512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414435721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:37 Heat of formation + Delta-G solvation = -85.774008 kcal Electronic energy + Delta-G solvation = -30013.791503 eV Core-core repulsion = 25346.192800 eV Total energy + Delta-G solvation = -4667.598704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.53274 -47.51831 -40.96756 -40.21060 -38.70532 -35.95262 -34.86158 -33.38009 -31.89024 -31.23529 -30.67116 -29.94463 -27.01003 -26.37962 -26.07176 -24.06845 -22.93832 -21.45452 -21.07369 -19.74462 -19.39996 -18.71518 -18.03592 -17.71114 -17.51214 -16.68450 -16.36106 -16.22217 -15.88560 -15.50264 -15.00446 -14.75752 -14.56609 -14.35293 -14.16942 -14.03719 -13.86227 -13.76520 -13.42090 -13.05494 -12.90635 -12.80270 -12.50719 -12.46290 -12.27528 -12.17532 -11.98275 -11.66129 -11.41816 -11.38629 -11.10994 -10.81023 -10.76230 -10.47875 -10.25124 -10.05227 -9.69401 -9.55045 -9.00343 -8.63287 -7.92233 -7.41610 -6.24720 -4.32295 2.07611 2.60736 2.96630 3.05505 3.12412 3.23828 3.27554 3.31003 3.38963 3.52094 3.58599 3.79661 3.80929 4.09165 4.23906 4.31780 4.40858 4.67151 4.77182 5.02262 5.08917 5.10285 5.19106 5.28529 5.39961 5.49960 5.70145 5.75202 5.93129 6.12495 6.23033 6.45891 6.59430 6.62007 6.77754 6.89276 7.02888 7.09350 7.49281 7.67746 7.83326 7.89979 8.06926 8.49260 8.66676 8.75903 9.33865 10.82473 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.002115 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.680668 B =13238.411308 C =13612.649559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.281 3.719 5 N -0.639 5.639 6 C 0.734 3.266 7 O -0.561 6.561 8 N -0.632 5.632 9 C 0.100 3.900 10 C -0.118 4.118 11 C 0.070 3.930 12 O -0.525 6.525 13 C 0.250 3.750 14 F -0.193 7.193 15 F -0.192 7.192 16 C 0.111 3.889 17 N -0.322 5.322 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.386 0.614 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.205 23.737 3.051 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.028 3.972 5 N -0.289 5.289 6 C 0.435 3.565 7 O -0.436 6.436 8 N -0.372 5.372 9 C -0.023 4.023 10 C -0.155 4.155 11 C 0.027 3.973 12 O -0.331 6.331 13 C 0.195 3.805 14 F -0.174 7.174 15 F -0.173 7.173 16 C -0.013 4.013 17 N -0.153 5.153 18 N -0.100 5.100 19 C 0.142 3.858 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.177 0.823 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.235 0.765 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.363 22.193 2.941 25.574 hybrid contribution -0.251 0.483 -0.934 1.081 sum 12.112 22.676 2.008 25.787 Atomic orbital electron populations 1.20330 0.87878 1.02801 1.03169 1.21056 0.94904 0.87132 1.00885 1.21212 0.89645 0.99801 1.21342 1.18641 0.86430 0.89274 1.02880 1.41337 1.07756 1.03406 1.76425 1.15001 0.83085 0.80281 0.78083 1.90887 1.22675 1.73370 1.56663 1.47246 1.04951 1.05644 1.79367 1.22405 0.80529 0.97599 1.01742 1.22893 1.00500 0.90772 1.01377 1.23169 0.95338 0.94365 0.84448 1.86690 1.61713 1.58861 1.25875 1.22301 0.79308 0.97877 0.81007 1.93027 1.35501 1.92349 1.96507 1.93031 1.89603 1.93888 1.40803 1.22277 0.94261 0.80782 1.03989 1.77255 0.99987 1.08212 1.29818 1.48979 1.00856 1.07770 1.52401 1.19678 0.95955 0.71320 0.98895 1.21287 1.46826 0.97933 0.91388 0.91818 1.24925 0.94688 0.96066 0.98103 1.69912 1.44902 1.07133 1.31067 0.86411 0.78804 0.77662 0.83782 1.20000 1.20965 1.19938 0.90427 0.90864 0.90832 0.82277 0.75858 0.90185 0.89899 0.88092 0.87823 0.76530 0.86653 0.89621 0.89843 0.93028 0.92776 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.01 0.36 -1.07 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -6.04 9.52 -39.84 -0.38 -6.42 16 4 C 0.28 5.82 8.11 -154.36 -1.25 4.57 16 5 N -0.64 -10.35 5.41 -15.51 -0.08 -10.43 16 6 C 0.73 11.27 8.46 -86.92 -0.74 10.53 16 7 O -0.56 -10.34 13.80 5.28 0.07 -10.27 16 8 N -0.63 -6.86 3.33 -176.09 -0.59 -7.44 16 9 C 0.10 0.79 6.58 -2.41 -0.02 0.77 16 10 C -0.12 -0.78 6.11 -24.47 -0.15 -0.93 16 11 C 0.07 0.42 0.92 -88.79 -0.08 0.34 16 12 O -0.53 -2.85 13.04 -35.23 -0.46 -3.31 16 13 C 0.25 1.35 4.63 37.16 0.17 1.52 16 14 F -0.19 -1.44 17.16 2.25 0.04 -1.40 16 15 F -0.19 -1.50 15.79 2.25 0.04 -1.47 16 16 C 0.11 0.89 6.15 -3.06 -0.02 0.87 16 17 N -0.32 -7.50 12.59 31.44 0.40 -7.11 16 18 N -0.32 -7.59 3.59 -58.33 -0.21 -7.80 16 19 C 0.26 6.67 5.99 -5.19 -0.03 6.64 16 20 C -0.54 -14.81 9.39 -34.44 -0.32 -15.14 16 21 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 24 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.26 7.07 -51.93 -0.37 0.90 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.16 3.26 5.91 -52.48 -0.31 2.95 16 32 H 0.41 5.41 7.29 -40.82 -0.30 5.11 16 33 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.08 0.59 7.28 -51.93 -0.38 0.21 16 35 H 0.10 0.68 7.37 -51.93 -0.38 0.30 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.39 0.44 9.09 45.56 0.41 0.85 16 38 H 0.12 0.22 8.14 -51.92 -0.42 -0.21 16 39 H 0.09 0.72 7.31 -51.93 -0.38 0.34 16 40 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 41 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -35.22 368.59 -7.21 -42.42 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.57 Total: 4.69 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -3.12 Total: 4.77 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.25 Total: -57.15 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.39 Total: -13.57 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.07 Total: -2.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.22 -7.21 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414435721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.350 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds