Wall clock time and date at job start Wed Apr 1 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99966 * 2 1 4 4 H 1.48504 * 109.46753 * 269.99525 * 3 2 1 5 5 H 1.48494 * 109.47692 * 29.99368 * 3 2 1 6 6 H 1.48505 * 109.47419 * 149.99976 * 3 2 1 7 7 C 1.37879 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99850 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47017 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99720 * 170.00119 * 10 9 7 12 12 C 1.53239 * 109.33696 * 187.25555 * 11 10 9 13 13 N 1.47078 * 108.52241 * 306.16972 * 12 11 10 14 14 C 1.34782 * 120.88240 * 231.18803 * 13 12 11 15 15 O 1.21288 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00375 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47386 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47009 * 179.97438 * 17 16 14 19 19 N 1.30274 * 126.27888 * 89.97830 * 18 17 16 20 20 N 1.28669 * 109.38134 * 180.02562 * 19 18 17 21 21 C 1.30274 * 109.37957 * 359.97438 * 20 19 18 22 22 C 1.50701 * 126.28238 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47423 * 30.02479 * 22 21 20 24 24 F 1.39900 * 109.46992 * 150.02621 * 22 21 20 25 25 O 1.34355 * 126.28321 * 269.99594 * 18 17 16 26 26 C 1.47073 * 118.23948 * 51.45855 * 13 12 11 27 27 C 1.46897 * 111.00166 * 294.30140 * 10 9 7 28 28 H 0.96996 * 120.00056 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46986 * 59.99904 * 9 7 2 30 30 H 1.08997 * 109.47204 * 299.99699 * 9 7 2 31 31 H 1.08992 * 109.49854 * 67.29849 * 11 10 9 32 32 H 1.09001 * 109.49203 * 307.21312 * 11 10 9 33 33 H 1.08998 * 109.62857 * 186.45852 * 12 11 10 34 34 H 1.09005 * 109.62959 * 65.87901 * 12 11 10 35 35 H 1.09002 * 109.47195 * 59.99746 * 16 14 13 36 36 H 1.09006 * 109.46774 * 300.00454 * 16 14 13 37 37 H 1.09000 * 109.46940 * 60.00355 * 17 16 14 38 38 H 1.09001 * 109.46992 * 299.99762 * 17 16 14 39 39 H 1.09004 * 109.46853 * 270.02496 * 22 21 20 40 40 H 1.08998 * 109.63378 * 68.25029 * 26 13 12 41 41 H 1.08998 * 109.63288 * 188.83713 * 26 13 12 42 42 H 1.09002 * 109.49372 * 292.70423 * 27 10 9 43 43 H 1.09003 * 109.49213 * 52.78766 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0022 11 6 5.4501 -2.6253 -0.2353 12 6 5.8899 -4.0832 -0.4070 13 7 5.4259 -4.8515 0.7581 14 6 6.2757 -5.6309 1.4559 15 8 7.4402 -5.7059 1.1252 16 6 5.7791 -6.4092 2.6469 17 6 6.9359 -7.2052 3.2544 18 6 6.4393 -7.9830 4.4459 19 7 5.9551 -9.1923 4.4296 20 7 5.6309 -9.5386 5.6256 21 6 5.8978 -8.5622 6.4457 22 6 5.6679 -8.5604 7.9351 23 9 5.7846 -9.8650 8.4265 24 9 6.6201 -7.7425 8.5528 25 8 6.4144 -7.5565 5.7197 26 6 4.0086 -4.7515 1.1380 27 6 3.6441 -3.2627 1.2524 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8912 30 1 3.8752 -0.6805 -0.8888 31 1 5.9723 -2.1856 0.6144 32 1 5.6886 -2.0646 -1.1391 33 1 6.9770 -4.1328 -0.4690 34 1 5.4494 -4.4939 -1.3155 35 1 4.9925 -7.0945 2.3309 36 1 5.3823 -5.7195 3.3919 37 1 7.7221 -6.5196 3.5706 38 1 7.3330 -7.8949 2.5096 39 1 4.6689 -8.1799 8.1481 40 1 3.3906 -5.2252 0.3752 41 1 3.8512 -5.2431 2.0980 42 1 4.1914 -2.8141 2.0815 43 1 2.5728 -3.1643 1.4276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471237164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:13 Heat of formation + Delta-G solvation = -77.525089 kcal Electronic energy + Delta-G solvation = -29396.832628 eV Core-core repulsion = 24729.591624 eV Total energy + Delta-G solvation = -4667.241004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.88346 -47.90643 -44.91357 -40.28355 -37.86901 -36.85970 -34.94092 -34.64417 -32.53723 -31.98183 -30.89309 -28.99029 -28.02941 -26.36815 -25.22488 -23.56424 -23.39953 -22.74451 -21.69408 -20.58772 -18.98626 -18.89753 -18.66731 -17.97308 -17.65129 -17.39022 -16.93516 -16.84395 -16.03362 -15.91299 -15.04757 -14.74987 -14.68491 -14.56237 -14.47278 -14.20517 -14.08593 -13.90281 -13.70526 -13.60022 -13.08321 -12.95379 -12.86479 -12.68537 -12.50769 -12.45551 -12.24235 -11.86418 -11.65673 -11.54854 -11.28338 -11.23343 -10.90937 -10.67799 -10.44889 -10.36881 -10.00004 -9.90388 -9.43320 -8.69608 -8.66994 -7.58081 -6.16468 -4.14982 0.31071 1.21752 1.65824 2.44273 2.50337 2.90223 3.13782 3.20304 3.28393 3.29413 3.49797 3.82119 3.92955 4.19210 4.31810 4.33205 4.46955 4.50367 4.57219 4.63538 4.77900 4.99674 5.10700 5.14563 5.21390 5.27996 5.33738 5.40586 5.45472 5.58420 5.65548 5.84564 6.05573 6.23434 6.29366 6.44286 6.69997 6.81905 7.30021 7.43775 7.55983 7.70460 7.84662 7.98739 8.51036 8.90040 9.44775 10.96246 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.002078 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.211405 B =13468.853743 C =14659.803350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.527 5.527 11 C 0.038 3.962 12 C 0.118 3.882 13 N -0.605 5.605 14 C 0.519 3.481 15 O -0.549 6.549 16 C -0.141 4.141 17 C -0.012 4.012 18 C 0.196 3.804 19 N -0.279 5.279 20 N -0.235 5.235 21 C 0.072 3.928 22 C 0.390 3.610 23 F -0.166 7.166 24 F -0.178 7.178 25 O -0.202 6.202 26 C 0.107 3.893 27 C 0.049 3.951 28 H 0.265 0.735 29 H -0.011 1.011 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.160 0.840 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.026 0.974 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 -15.283 12.894 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.552 4.552 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.092 4.092 12 C -0.004 4.004 13 N -0.338 5.338 14 C 0.307 3.693 15 O -0.428 6.428 16 C -0.182 4.182 17 C -0.051 4.051 18 C -0.014 4.014 19 N -0.126 5.126 20 N -0.084 5.084 21 C -0.141 4.141 22 C 0.334 3.666 23 F -0.147 7.147 24 F -0.159 7.159 25 O -0.080 6.080 26 C -0.016 4.016 27 C -0.080 4.080 28 H 0.075 0.925 29 H 0.007 0.993 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.177 0.823 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.051 -16.579 11.926 23.713 hybrid contribution 1.086 2.532 1.131 2.978 sum 13.137 -14.047 13.057 23.246 Atomic orbital electron populations 1.69883 1.06118 1.26998 1.50620 1.24896 0.94741 0.98894 0.94699 0.86872 0.80237 0.84012 0.78683 1.20062 1.21145 1.19352 1.20988 0.88539 0.94743 1.50892 0.90054 1.20182 0.97205 0.83676 0.95270 1.61893 1.10113 1.19399 1.33723 1.22466 0.90328 0.95354 1.01018 1.21773 1.00310 0.90799 0.87521 1.48225 1.10251 1.45032 1.30266 1.20174 0.85739 0.79603 0.83772 1.90703 1.17200 1.65263 1.69664 1.21682 0.99036 1.00017 0.97422 1.20092 0.98223 0.98579 0.88164 1.28402 0.96637 0.92225 0.84100 1.74571 1.14658 1.10395 1.13001 1.74441 1.15447 1.22878 0.95622 1.28458 1.01893 0.84932 0.98792 1.19334 0.93830 0.75639 0.77769 1.93133 1.97095 1.37439 1.87031 1.93118 1.67697 1.72089 1.83024 1.84826 1.62375 1.41422 1.19365 1.22171 0.80249 0.98371 1.00801 1.22459 1.03151 0.91512 0.90896 0.92539 0.99338 0.95547 0.95424 0.89905 0.89148 0.90567 0.87475 0.87966 0.87006 0.85513 0.82343 0.89982 0.90083 0.95573 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.51 -13.61 8.96 -34.44 -0.31 -13.92 16 8 H 0.08 2.33 7.37 -52.49 -0.39 1.94 16 9 C 0.16 3.66 3.79 -4.98 -0.02 3.64 16 10 N -0.53 -9.85 4.62 -235.46 -1.09 -10.94 16 11 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 12 C 0.12 1.59 6.60 -3.60 -0.02 1.56 16 13 N -0.61 -7.64 3.00 -172.18 -0.52 -8.16 16 14 C 0.52 6.12 7.71 -10.99 -0.08 6.03 16 15 O -0.55 -7.95 15.44 5.55 0.09 -7.86 16 16 C -0.14 -1.15 4.05 -27.89 -0.11 -1.26 16 17 C -0.01 -0.09 5.13 -27.88 -0.14 -0.24 16 18 C 0.20 1.84 7.73 -12.94 -0.10 1.74 16 19 N -0.28 -3.20 12.22 32.55 0.40 -2.80 16 20 N -0.24 -2.65 12.17 32.55 0.40 -2.26 16 21 C 0.07 0.64 7.95 -12.94 -0.10 0.54 16 22 C 0.39 2.14 5.86 36.01 0.21 2.35 16 23 F -0.17 -1.20 17.28 2.25 0.04 -1.16 16 24 F -0.18 -1.23 17.32 2.25 0.04 -1.19 16 25 O -0.20 -1.88 10.87 5.39 0.06 -1.82 16 26 C 0.11 1.30 6.53 -3.36 -0.02 1.28 16 27 C 0.05 0.79 5.47 -3.46 -0.02 0.77 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 29 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 30 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.23 7.99 -51.93 -0.41 0.81 16 33 H 0.09 1.19 7.06 -51.93 -0.37 0.82 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 0.76 7.99 -51.93 -0.41 0.35 16 36 H 0.10 0.72 7.67 -51.93 -0.40 0.32 16 37 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.13 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.16 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 0.74 6.02 -51.93 -0.31 0.42 16 42 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 1.89 6.67 -51.93 -0.35 1.55 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -33.48 366.53 -5.32 -38.80 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.52 Total: -3.38 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.84 Total: 4.88 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.04 Total: -49.68 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.14 Total: -9.69 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.08 Total: -2.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.48 -5.32 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471237164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.723 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds