Wall clock time and date at job start Wed Apr 1 2020 02:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99966 * 2 1 4 4 H 1.48504 * 109.46753 * 269.99525 * 3 2 1 5 5 H 1.48494 * 109.47692 * 29.99368 * 3 2 1 6 6 H 1.48505 * 109.47419 * 149.99976 * 3 2 1 7 7 C 1.37879 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99850 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47017 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99720 * 170.00119 * 10 9 7 12 12 C 1.53239 * 109.33696 * 187.25555 * 11 10 9 13 13 N 1.47078 * 108.52241 * 306.16972 * 12 11 10 14 14 C 1.34782 * 120.88240 * 231.18803 * 13 12 11 15 15 O 1.21288 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00375 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47386 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47009 * 179.97438 * 17 16 14 19 19 N 1.30274 * 126.27888 * 89.97830 * 18 17 16 20 20 N 1.28669 * 109.38134 * 180.02562 * 19 18 17 21 21 C 1.30274 * 109.37957 * 359.97438 * 20 19 18 22 22 C 1.50701 * 126.28238 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47423 * 30.02479 * 22 21 20 24 24 F 1.39900 * 109.46992 * 150.02621 * 22 21 20 25 25 O 1.34355 * 126.28321 * 269.99594 * 18 17 16 26 26 C 1.47073 * 118.23948 * 51.45855 * 13 12 11 27 27 C 1.46897 * 111.00166 * 294.30140 * 10 9 7 28 28 H 0.96996 * 120.00056 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46986 * 59.99904 * 9 7 2 30 30 H 1.08997 * 109.47204 * 299.99699 * 9 7 2 31 31 H 1.08992 * 109.49854 * 67.29849 * 11 10 9 32 32 H 1.09001 * 109.49203 * 307.21312 * 11 10 9 33 33 H 1.08998 * 109.62857 * 186.45852 * 12 11 10 34 34 H 1.09005 * 109.62959 * 65.87901 * 12 11 10 35 35 H 1.09002 * 109.47195 * 59.99746 * 16 14 13 36 36 H 1.09006 * 109.46774 * 300.00454 * 16 14 13 37 37 H 1.09000 * 109.46940 * 60.00355 * 17 16 14 38 38 H 1.09001 * 109.46992 * 299.99762 * 17 16 14 39 39 H 1.09004 * 109.46853 * 270.02496 * 22 21 20 40 40 H 1.08998 * 109.63378 * 68.25029 * 26 13 12 41 41 H 1.08998 * 109.63288 * 188.83713 * 26 13 12 42 42 H 1.09002 * 109.49372 * 292.70423 * 27 10 9 43 43 H 1.09003 * 109.49213 * 52.78766 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0022 11 6 5.4501 -2.6253 -0.2353 12 6 5.8899 -4.0832 -0.4070 13 7 5.4259 -4.8515 0.7581 14 6 6.2757 -5.6309 1.4559 15 8 7.4402 -5.7059 1.1252 16 6 5.7791 -6.4092 2.6469 17 6 6.9359 -7.2052 3.2544 18 6 6.4393 -7.9830 4.4459 19 7 5.9551 -9.1923 4.4296 20 7 5.6309 -9.5386 5.6256 21 6 5.8978 -8.5622 6.4457 22 6 5.6679 -8.5604 7.9351 23 9 5.7846 -9.8650 8.4265 24 9 6.6201 -7.7425 8.5528 25 8 6.4144 -7.5565 5.7197 26 6 4.0086 -4.7515 1.1380 27 6 3.6441 -3.2627 1.2524 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8912 30 1 3.8752 -0.6805 -0.8888 31 1 5.9723 -2.1856 0.6144 32 1 5.6886 -2.0646 -1.1391 33 1 6.9770 -4.1328 -0.4690 34 1 5.4494 -4.4939 -1.3155 35 1 4.9925 -7.0945 2.3309 36 1 5.3823 -5.7195 3.3919 37 1 7.7221 -6.5196 3.5706 38 1 7.3330 -7.8949 2.5096 39 1 4.6689 -8.1799 8.1481 40 1 3.3906 -5.2252 0.3752 41 1 3.8512 -5.2431 2.0980 42 1 4.1914 -2.8141 2.0815 43 1 2.5728 -3.1643 1.4276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471237164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:12 Heat of formation + Delta-G solvation = -105.223244 kcal Electronic energy + Delta-G solvation = -29398.033710 eV Core-core repulsion = 24729.591624 eV Total energy + Delta-G solvation = -4668.442086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.36285 -48.39600 -45.62497 -41.29532 -39.10710 -37.58749 -36.00507 -35.65483 -34.42961 -32.80833 -31.93789 -30.52206 -28.78661 -27.52820 -26.27463 -24.67406 -24.10057 -23.68781 -23.10067 -21.85660 -19.92773 -19.46720 -19.31746 -18.94203 -18.52469 -18.42795 -18.03780 -17.58986 -16.96630 -16.82973 -16.56127 -16.04179 -15.84379 -15.59988 -15.22426 -15.17897 -15.06449 -14.70036 -14.62508 -14.48340 -14.40625 -14.02216 -13.84089 -13.73302 -13.47096 -13.30779 -13.12385 -13.06803 -12.88215 -12.55371 -12.47387 -12.31298 -12.23090 -12.17817 -11.93748 -11.84193 -11.41475 -11.12546 -10.86285 -10.77466 -9.79088 -9.05594 -8.27718 -6.30678 -0.35774 0.60864 0.93015 1.35598 1.36740 1.46142 1.52967 1.82235 2.05864 2.34254 2.75685 2.87167 3.05066 3.15847 3.27730 3.42249 3.57216 3.63467 3.83930 3.94891 3.97548 3.99546 4.04710 4.11721 4.22702 4.27846 4.40950 4.42022 4.58130 4.68312 4.74469 4.80410 4.82212 4.87749 4.94271 5.05366 5.13821 5.40958 5.53101 5.92682 6.29182 6.38203 6.60571 6.75958 6.84341 7.04497 7.33132 8.88157 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.002078 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.211405 B =13468.853743 C =14659.803350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.513 4.513 8 H 0.046 0.954 9 C 0.172 3.828 10 N -0.541 5.541 11 C 0.041 3.959 12 C 0.124 3.876 13 N -0.610 5.610 14 C 0.522 3.478 15 O -0.576 6.576 16 C -0.133 4.133 17 C -0.006 4.006 18 C 0.203 3.797 19 N -0.306 5.306 20 N -0.268 5.268 21 C 0.081 3.919 22 C 0.391 3.609 23 F -0.177 7.177 24 F -0.186 7.186 25 O -0.205 6.205 26 C 0.119 3.881 27 C 0.048 3.952 28 H 0.266 0.734 29 H -0.015 1.015 30 H 0.029 0.971 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.212 0.788 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.027 0.973 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.555 -15.224 13.893 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.044 3.956 10 N -0.266 5.266 11 C -0.088 4.088 12 C 0.001 3.999 13 N -0.342 5.342 14 C 0.311 3.689 15 O -0.457 6.457 16 C -0.174 4.174 17 C -0.044 4.044 18 C -0.008 4.008 19 N -0.153 5.153 20 N -0.116 5.116 21 C -0.133 4.133 22 C 0.336 3.664 23 F -0.158 7.158 24 F -0.167 7.167 25 O -0.083 6.083 26 C -0.004 4.004 27 C -0.081 4.081 28 H 0.075 0.925 29 H 0.003 0.997 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.229 0.771 40 H 0.099 0.901 41 H 0.136 0.864 42 H 0.046 0.954 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.428 -16.559 12.928 24.933 hybrid contribution 0.673 2.430 0.839 2.657 sum 14.101 -14.130 13.767 24.249 Atomic orbital electron populations 1.70031 1.07979 1.28032 1.52545 1.25771 0.95515 1.02873 0.94553 0.85793 0.79297 0.79165 0.79126 1.19216 1.20993 1.17761 1.21225 0.90782 0.93392 1.49690 0.93574 1.19933 0.94464 0.86180 0.94975 1.61802 1.12353 1.17152 1.35261 1.22510 0.88032 0.97113 1.01173 1.21651 1.00550 0.89489 0.88177 1.48279 1.10463 1.45285 1.30214 1.20678 0.85099 0.79052 0.84028 1.90698 1.18403 1.66077 1.70477 1.21672 0.99366 1.00170 0.96166 1.20092 0.98202 0.98503 0.87628 1.28558 0.95962 0.91784 0.84449 1.74512 1.15797 1.11445 1.13521 1.74382 1.17115 1.24064 0.96033 1.29179 1.00065 0.84073 0.99938 1.20044 0.95608 0.75097 0.75653 1.93111 1.97223 1.38540 1.86928 1.93102 1.68452 1.72232 1.82894 1.84844 1.62493 1.41598 1.19397 1.22098 0.79990 0.95432 1.02851 1.22452 1.01523 0.94154 0.89943 0.92474 0.99691 0.95333 0.95601 0.89309 0.88630 0.90300 0.85946 0.86163 0.86372 0.85447 0.77145 0.90053 0.86380 0.95442 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.67 13.96 21.45 0.30 -56.37 16 2 C 0.01 0.59 5.47 84.65 0.46 1.05 16 3 Si 0.94 42.21 27.47 68.60 1.88 44.10 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.51 -27.69 8.96 25.60 0.23 -27.46 16 8 H 0.05 2.75 7.37 -2.91 -0.02 2.73 16 9 C 0.17 7.64 3.79 85.56 0.32 7.96 16 10 N -0.54 -19.89 4.62 -898.87 -4.15 -24.04 16 11 C 0.04 1.20 5.62 86.38 0.49 1.68 16 12 C 0.12 3.10 6.60 86.35 0.57 3.67 16 13 N -0.61 -14.02 3.00 -817.05 -2.45 -16.47 16 14 C 0.52 10.98 7.71 87.65 0.68 11.65 16 15 O -0.58 -15.51 15.44 -3.05 -0.05 -15.56 16 16 C -0.13 -1.77 4.05 29.85 0.12 -1.65 16 17 C -0.01 -0.07 5.13 29.85 0.15 0.08 16 18 C 0.20 3.45 7.73 88.34 0.68 4.13 16 19 N -0.31 -6.68 12.22 -165.51 -2.02 -8.70 16 20 N -0.27 -5.78 12.17 -165.49 -2.01 -7.79 16 21 C 0.08 1.30 7.95 88.34 0.70 2.00 16 22 C 0.39 3.38 5.86 71.24 0.42 3.80 16 23 F -0.18 -2.29 17.28 44.97 0.78 -1.51 16 24 F -0.19 -2.19 17.32 44.97 0.78 -1.41 16 25 O -0.21 -3.41 10.87 -3.63 -0.04 -3.45 16 26 C 0.12 2.64 6.53 86.51 0.57 3.20 16 27 C 0.05 1.53 5.47 86.54 0.47 2.00 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H -0.01 -0.66 7.18 -2.39 -0.02 -0.67 16 30 H 0.03 1.26 7.40 -2.39 -0.02 1.24 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 2.49 7.99 -2.39 -0.02 2.47 16 33 H 0.10 2.34 7.06 -2.39 -0.02 2.32 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.12 1.33 7.99 -2.39 -0.02 1.31 16 36 H 0.12 1.23 7.67 -2.38 -0.02 1.21 16 37 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 38 H 0.13 1.74 8.10 -2.39 -0.02 1.72 16 39 H 0.21 -0.37 8.14 -2.38 -0.02 -0.39 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 41 H 0.12 1.75 6.02 -2.39 -0.01 1.73 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 2.85 6.67 -2.39 -0.02 2.84 16 Total: -1.00 -74.20 366.53 -0.13 -74.32 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.00 Total: 4.78 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.86 Total: 12.12 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -10.34 Total: -113.38 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.09 Total: -19.01 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 1.56 Total: -2.92 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.10 kcal Total: -74.20 -0.13 -74.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471237164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.898 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds