Wall clock time and date at job start Wed Apr 1 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00136 * 2 1 4 4 H 1.48505 * 109.47260 * 269.99521 * 3 2 1 5 5 H 1.48495 * 109.47103 * 29.99830 * 3 2 1 6 6 H 1.48500 * 109.47275 * 149.99816 * 3 2 1 7 7 C 1.38814 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00108 * 0.02562 * 7 2 1 9 9 N 1.36941 * 120.00043 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00043 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.49795 * 60.06662 * 10 9 7 12 12 O 1.42904 * 109.47068 * 304.93455 * 11 10 9 13 13 C 1.53039 * 109.52488 * 180.14870 * 10 9 7 14 14 C 1.53043 * 109.53894 * 58.59725 * 13 10 9 15 15 C 1.52768 * 109.37870 * 61.24348 * 14 13 10 16 16 N 1.46924 * 109.00826 * 305.58549 * 15 14 13 17 17 C 1.34779 * 120.63014 * 233.58857 * 16 15 14 18 18 O 1.21569 * 119.99829 * 184.38492 * 17 16 15 19 19 C 1.47704 * 119.99949 * 4.37699 * 17 16 15 20 20 C 1.41507 * 126.51672 * 173.57316 * 19 17 16 21 21 C 1.35366 * 105.50179 * 179.97438 * 20 19 17 22 22 N 1.35029 * 107.22917 * 0.22694 * 21 20 19 23 23 C 1.46499 * 124.88300 * 179.76692 * 22 21 20 24 24 F 1.39896 * 109.47430 * 300.00438 * 23 22 21 25 25 F 1.39903 * 109.47217 * 60.00666 * 23 22 21 26 26 N 1.28468 * 110.23210 * 359.61294 * 22 21 20 27 27 C 1.46927 * 118.73666 * 53.31190 * 16 15 14 28 28 H 0.97005 * 119.99369 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99531 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47231 * 64.93498 * 11 10 9 31 31 H 1.09004 * 109.47065 * 184.93793 * 11 10 9 32 32 H 0.96701 * 113.99868 * 180.02562 * 12 11 10 33 33 H 1.08994 * 109.46103 * 178.62051 * 13 10 9 34 34 H 1.09007 * 109.45794 * 298.58313 * 13 10 9 35 35 H 1.08995 * 109.49795 * 181.31325 * 14 13 10 36 36 H 1.09000 * 109.49812 * 301.42087 * 14 13 10 37 37 H 1.09005 * 109.50472 * 185.70884 * 15 14 13 38 38 H 1.08993 * 109.43128 * 65.42230 * 15 14 13 39 39 H 1.08001 * 127.24895 * 359.94774 * 20 19 17 40 40 H 1.08003 * 126.38067 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47153 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.58556 * 66.43259 * 27 16 15 43 43 H 1.09004 * 109.58510 * 186.71245 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 3.7436 -3.2733 -1.2495 12 8 2.3252 -3.4360 -1.3101 13 6 5.6170 -2.1928 0.0031 14 6 5.9814 -1.3621 1.2357 15 6 5.6320 -2.1482 2.4982 16 7 4.2201 -2.5497 2.4365 17 6 3.3773 -2.2537 3.4459 18 8 2.2318 -2.6599 3.4201 19 6 3.8456 -1.4361 4.5833 20 6 3.0537 -0.9389 5.6454 21 6 3.9065 -0.2532 6.4423 22 7 5.1319 -0.3353 5.8810 23 6 6.3457 0.2779 6.4258 24 9 6.1728 1.6638 6.5053 25 9 6.5944 -0.2352 7.7034 26 7 5.0807 -1.0312 4.8024 27 6 3.7428 -3.2745 1.2509 28 1 -0.4849 0.8401 -0.0004 29 1 3.8646 -0.3622 -0.0004 30 1 4.0865 -2.7415 -2.1370 31 1 4.2201 -4.2528 -1.2060 32 1 2.0192 -3.9369 -2.0785 33 1 6.1607 -3.1371 0.0278 34 1 5.8863 -1.6423 -0.8983 35 1 7.0494 -1.1446 1.2251 36 1 5.4192 -0.4283 1.2244 37 1 5.7956 -1.5209 3.3745 38 1 6.2619 -3.0356 2.5587 39 1 1.9924 -1.0771 5.7897 40 1 3.6531 0.2665 7.3545 41 1 7.1899 0.0542 5.7735 42 1 4.2156 -4.2557 1.2077 43 1 2.6606 -3.3924 1.3058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502571120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:38 Heat of formation + Delta-G solvation = -42.630662 kcal Electronic energy + Delta-G solvation = -32240.351340 eV Core-core repulsion = 27574.623472 eV Total energy + Delta-G solvation = -4665.727868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.80902 -47.89597 -42.76765 -39.70219 -37.69027 -35.70625 -33.90816 -32.99131 -32.22443 -31.18921 -30.88820 -29.19131 -27.14286 -25.38708 -25.25991 -23.16801 -22.68205 -21.87030 -21.48538 -19.66787 -18.87603 -18.35388 -18.25328 -17.82448 -17.67671 -16.67003 -16.23917 -15.72073 -15.59207 -15.07217 -14.73391 -14.57852 -14.35145 -14.22107 -14.17071 -14.04072 -13.86544 -13.63257 -13.30788 -13.19579 -12.85007 -12.66467 -12.50352 -12.41279 -12.04466 -11.79417 -11.57400 -11.14551 -10.84231 -10.71696 -10.63926 -10.14085 -9.97379 -9.89154 -9.60880 -9.52137 -9.35846 -9.34394 -8.90869 -8.78356 -8.05691 -7.05279 -5.47562 -2.82024 1.35613 1.49279 2.11354 3.04886 3.37288 3.45677 3.47686 3.55189 3.64998 3.81029 4.14149 4.48368 4.50989 4.73953 4.83266 4.99761 5.13625 5.21468 5.32956 5.43433 5.51245 5.54980 5.62937 5.80513 5.83444 5.86835 5.90414 5.99719 6.07182 6.13184 6.17909 6.26501 6.34735 6.48862 6.57697 6.62480 6.89661 7.13381 7.58053 7.94101 8.33609 8.46100 8.68796 8.73665 9.50882 10.17697 10.32913 11.71256 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.004299 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.535192 B = 6512.296385 C = 7175.043038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.868 3.132 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.203 4.203 8 H 0.117 0.883 9 N -0.729 5.729 10 C 0.194 3.806 11 C 0.076 3.924 12 O -0.529 6.529 13 C -0.120 4.120 14 C -0.131 4.131 15 C 0.078 3.922 16 N -0.581 5.581 17 C 0.599 3.401 18 O -0.509 6.509 19 C 0.038 3.962 20 C -0.165 4.165 21 C -0.001 4.001 22 N -0.358 5.358 23 C 0.497 3.503 24 F -0.176 7.176 25 F -0.177 7.177 26 N -0.259 5.259 27 C 0.111 3.889 28 H 0.253 0.747 29 H 0.357 0.643 30 H 0.037 0.963 31 H 0.026 0.974 32 H 0.352 0.648 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.059 0.941 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.170 0.830 42 H 0.050 0.950 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.184 -3.581 10.496 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.195 4.195 3 Si 0.700 3.300 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.333 4.333 8 H 0.135 0.865 9 N -0.371 5.371 10 C 0.101 3.899 11 C -0.005 4.005 12 O -0.332 6.332 13 C -0.158 4.158 14 C -0.169 4.169 15 C -0.046 4.046 16 N -0.313 5.313 17 C 0.384 3.616 18 O -0.382 6.382 19 C -0.126 4.126 20 C -0.192 4.192 21 C -0.141 4.141 22 N -0.153 5.153 23 C 0.363 3.637 24 F -0.157 7.157 25 F -0.158 7.158 26 N -0.091 5.091 27 C -0.013 4.013 28 H 0.063 0.937 29 H 0.191 0.809 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.197 0.803 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.189 0.811 40 H 0.202 0.798 41 H 0.186 0.814 42 H 0.068 0.932 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.540 -3.439 10.743 21.702 hybrid contribution -0.071 1.404 -0.150 1.414 sum 18.469 -2.035 10.593 21.388 Atomic orbital electron populations 1.69681 1.04761 1.24725 1.59436 1.24606 0.95042 0.96142 1.03730 0.86805 0.79142 0.86848 0.77231 1.21743 1.22232 1.21063 1.19400 0.79936 0.95237 1.38704 0.86536 1.42812 1.04415 1.00642 1.89244 1.19913 0.89907 0.88031 0.92015 1.22635 0.83065 0.96417 0.98377 1.87043 1.20227 1.77537 1.48358 1.21693 0.95600 1.00145 0.98326 1.21784 1.00520 0.99905 0.94704 1.22478 0.81491 0.99640 1.01035 1.47584 1.09285 1.56123 1.18287 1.16779 0.84853 0.79448 0.80565 1.90845 1.17364 1.52399 1.77547 1.22507 0.89367 1.02246 0.98511 1.21955 1.01607 1.01513 0.94173 1.22934 0.84479 1.04652 1.02010 1.46713 1.08440 1.40876 1.19250 1.21125 0.87490 0.73558 0.81537 1.93159 1.95802 1.30231 1.96500 1.93146 1.93536 1.86747 1.42416 1.73182 1.22574 1.11237 1.02069 1.22183 1.03076 0.92145 0.83860 0.93690 0.80930 0.94472 0.95619 0.80281 0.91512 0.91651 0.91431 0.91150 0.85458 0.92317 0.81095 0.79753 0.81352 0.93171 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.91 13.97 55.49 0.78 -30.13 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 3 Si 0.87 23.18 27.73 -169.99 -4.71 18.47 16 4 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 5 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 6 H -0.28 -7.16 6.52 56.52 0.37 -6.79 16 7 C -0.20 -5.80 8.55 -15.06 -0.13 -5.93 16 8 H 0.12 3.67 5.50 -52.49 -0.29 3.38 16 9 N -0.73 -17.10 4.55 -47.12 -0.21 -17.31 16 10 C 0.19 3.60 0.68 -131.70 -0.09 3.51 16 11 C 0.08 1.30 6.09 37.16 0.23 1.53 16 12 O -0.53 -10.55 10.05 -35.23 -0.35 -10.91 16 13 C -0.12 -1.71 4.77 -26.69 -0.13 -1.84 16 14 C -0.13 -1.84 5.90 -26.83 -0.16 -1.99 16 15 C 0.08 1.11 6.29 -3.93 -0.02 1.08 16 16 N -0.58 -10.65 2.90 -174.19 -0.50 -11.16 16 17 C 0.60 12.31 7.70 -12.39 -0.10 12.21 16 18 O -0.51 -12.45 16.36 5.31 0.09 -12.37 16 19 C 0.04 0.65 6.90 -82.77 -0.57 0.08 16 20 C -0.17 -2.49 10.81 -39.36 -0.43 -2.91 16 21 C 0.00 -0.01 11.33 -17.17 -0.19 -0.21 16 22 N -0.36 -4.17 3.56 -66.62 -0.24 -4.41 16 23 C 0.50 3.86 6.24 59.85 0.37 4.24 16 24 F -0.18 -1.58 17.46 2.25 0.04 -1.54 16 25 F -0.18 -1.42 17.46 2.25 0.04 -1.38 16 26 N -0.26 -3.65 8.31 33.42 0.28 -3.38 16 27 C 0.11 2.13 4.90 -3.71 -0.02 2.11 16 28 H 0.25 8.04 8.31 -40.82 -0.34 7.70 16 29 H 0.36 8.45 4.29 -40.82 -0.18 8.27 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.35 5.30 9.12 45.56 0.42 5.72 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.21 6.75 -51.93 -0.35 0.86 16 37 H 0.13 1.77 3.71 -117.37 -0.44 1.34 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.17 2.47 8.06 -52.49 -0.42 2.04 16 40 H 0.19 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.17 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.11 2.59 5.85 -51.93 -0.30 2.29 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -38.56 353.53 -5.34 -43.91 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -4.53 Total: 13.15 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -1.33 Total: 11.73 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: 0.10 Total: -66.38 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.27 Total: -23.28 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.71 Total: 18.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.56 -5.34 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502571120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.277 kcal (2) G-P(sol) polarization free energy of solvation -38.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds