Wall clock time and date at job start Wed Apr 1 2020 02:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00136 * 2 1 4 4 H 1.48505 * 109.47260 * 269.99521 * 3 2 1 5 5 H 1.48495 * 109.47103 * 29.99830 * 3 2 1 6 6 H 1.48500 * 109.47275 * 149.99816 * 3 2 1 7 7 C 1.38814 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00108 * 0.02562 * 7 2 1 9 9 N 1.36941 * 120.00043 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00043 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.49795 * 60.06662 * 10 9 7 12 12 O 1.42904 * 109.47068 * 304.93455 * 11 10 9 13 13 C 1.53039 * 109.52488 * 180.14870 * 10 9 7 14 14 C 1.53043 * 109.53894 * 58.59725 * 13 10 9 15 15 C 1.52768 * 109.37870 * 61.24348 * 14 13 10 16 16 N 1.46924 * 109.00826 * 305.58549 * 15 14 13 17 17 C 1.34779 * 120.63014 * 233.58857 * 16 15 14 18 18 O 1.21569 * 119.99829 * 184.38492 * 17 16 15 19 19 C 1.47704 * 119.99949 * 4.37699 * 17 16 15 20 20 C 1.41507 * 126.51672 * 173.57316 * 19 17 16 21 21 C 1.35366 * 105.50179 * 179.97438 * 20 19 17 22 22 N 1.35029 * 107.22917 * 0.22694 * 21 20 19 23 23 C 1.46499 * 124.88300 * 179.76692 * 22 21 20 24 24 F 1.39896 * 109.47430 * 300.00438 * 23 22 21 25 25 F 1.39903 * 109.47217 * 60.00666 * 23 22 21 26 26 N 1.28468 * 110.23210 * 359.61294 * 22 21 20 27 27 C 1.46927 * 118.73666 * 53.31190 * 16 15 14 28 28 H 0.97005 * 119.99369 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99531 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47231 * 64.93498 * 11 10 9 31 31 H 1.09004 * 109.47065 * 184.93793 * 11 10 9 32 32 H 0.96701 * 113.99868 * 180.02562 * 12 11 10 33 33 H 1.08994 * 109.46103 * 178.62051 * 13 10 9 34 34 H 1.09007 * 109.45794 * 298.58313 * 13 10 9 35 35 H 1.08995 * 109.49795 * 181.31325 * 14 13 10 36 36 H 1.09000 * 109.49812 * 301.42087 * 14 13 10 37 37 H 1.09005 * 109.50472 * 185.70884 * 15 14 13 38 38 H 1.08993 * 109.43128 * 65.42230 * 15 14 13 39 39 H 1.08001 * 127.24895 * 359.94774 * 20 19 17 40 40 H 1.08003 * 126.38067 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47153 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.58556 * 66.43259 * 27 16 15 43 43 H 1.09004 * 109.58510 * 186.71245 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 3.7436 -3.2733 -1.2495 12 8 2.3252 -3.4360 -1.3101 13 6 5.6170 -2.1928 0.0031 14 6 5.9814 -1.3621 1.2357 15 6 5.6320 -2.1482 2.4982 16 7 4.2201 -2.5497 2.4365 17 6 3.3773 -2.2537 3.4459 18 8 2.2318 -2.6599 3.4201 19 6 3.8456 -1.4361 4.5833 20 6 3.0537 -0.9389 5.6454 21 6 3.9065 -0.2532 6.4423 22 7 5.1319 -0.3353 5.8810 23 6 6.3457 0.2779 6.4258 24 9 6.1728 1.6638 6.5053 25 9 6.5944 -0.2352 7.7034 26 7 5.0807 -1.0312 4.8024 27 6 3.7428 -3.2745 1.2509 28 1 -0.4849 0.8401 -0.0004 29 1 3.8646 -0.3622 -0.0004 30 1 4.0865 -2.7415 -2.1370 31 1 4.2201 -4.2528 -1.2060 32 1 2.0192 -3.9369 -2.0785 33 1 6.1607 -3.1371 0.0278 34 1 5.8863 -1.6423 -0.8983 35 1 7.0494 -1.1446 1.2251 36 1 5.4192 -0.4283 1.2244 37 1 5.7956 -1.5209 3.3745 38 1 6.2619 -3.0356 2.5587 39 1 1.9924 -1.0771 5.7897 40 1 3.6531 0.2665 7.3545 41 1 7.1899 0.0542 5.7735 42 1 4.2156 -4.2557 1.2077 43 1 2.6606 -3.3924 1.3058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502571120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:37 Heat of formation + Delta-G solvation = -74.594199 kcal Electronic energy + Delta-G solvation = -32241.737383 eV Core-core repulsion = 27574.623472 eV Total energy + Delta-G solvation = -4667.113911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.44912 -48.53528 -43.83314 -41.13579 -39.23711 -37.16452 -35.63840 -34.27430 -33.75448 -32.68582 -32.10795 -30.96816 -28.23244 -26.63310 -26.44842 -25.24888 -23.86207 -23.01292 -22.57471 -20.98105 -20.02246 -19.68116 -19.50712 -19.03202 -18.50256 -17.95377 -17.81998 -17.14832 -16.78760 -16.48730 -16.13549 -15.84751 -15.66808 -15.37334 -15.27938 -15.08516 -14.85296 -14.77672 -14.66841 -14.57345 -14.31781 -14.20124 -13.88809 -13.52283 -13.38763 -13.17783 -13.01937 -12.80139 -12.71281 -12.37297 -12.08170 -11.88063 -11.37523 -11.35845 -11.33206 -11.04708 -10.75336 -10.69832 -10.54284 -10.40764 -9.59972 -9.05565 -7.80492 -5.10980 0.21569 0.65856 0.95223 1.27962 1.34333 1.39915 2.00773 2.38922 2.44186 2.56661 2.97699 3.34798 3.44232 3.49797 3.56480 3.62891 3.72944 3.89062 4.02908 4.10070 4.19560 4.31469 4.45293 4.50589 4.58177 4.62796 4.74753 4.75839 4.81995 4.91913 4.97278 5.01970 5.16107 5.20020 5.36854 5.45016 5.47806 5.79003 6.15345 6.38876 6.47705 6.61510 7.14767 7.21598 7.34732 8.01087 8.16979 9.42675 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.004299 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.535192 B = 6512.296385 C = 7175.043038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.996 5.996 2 C -0.087 4.087 3 Si 0.936 3.064 4 H -0.282 1.282 5 H -0.311 1.311 6 H -0.260 1.260 7 C -0.159 4.159 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.180 3.820 11 C 0.073 3.927 12 O -0.571 6.571 13 C -0.113 4.113 14 C -0.128 4.128 15 C 0.071 3.929 16 N -0.581 5.581 17 C 0.585 3.415 18 O -0.574 6.574 19 C 0.000 4.000 20 C -0.198 4.198 21 C 0.021 3.979 22 N -0.351 5.351 23 C 0.497 3.503 24 F -0.180 7.180 25 F -0.175 7.175 26 N -0.240 5.240 27 C 0.114 3.886 28 H 0.245 0.755 29 H 0.358 0.642 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.372 0.628 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.034 0.966 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.161 0.839 40 H 0.224 0.776 41 H 0.214 0.786 42 H 0.084 0.916 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.759 -3.222 11.049 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.651 5.651 2 C -0.275 4.275 3 Si 0.767 3.233 4 H -0.209 1.209 5 H -0.239 1.239 6 H -0.185 1.185 7 C -0.291 4.291 8 H 0.097 0.903 9 N -0.373 5.373 10 C 0.089 3.911 11 C -0.007 4.007 12 O -0.376 6.376 13 C -0.151 4.151 14 C -0.166 4.166 15 C -0.051 4.051 16 N -0.311 5.311 17 C 0.371 3.629 18 O -0.452 6.452 19 C -0.162 4.162 20 C -0.225 4.225 21 C -0.120 4.120 22 N -0.147 5.147 23 C 0.365 3.635 24 F -0.161 7.161 25 F -0.157 7.157 26 N -0.073 5.073 27 C -0.010 4.010 28 H 0.054 0.946 29 H 0.192 0.808 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.219 0.781 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.053 0.947 37 H 0.150 0.850 38 H 0.112 0.888 39 H 0.178 0.822 40 H 0.240 0.760 41 H 0.230 0.770 42 H 0.102 0.898 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 24.265 -3.114 11.275 26.937 hybrid contribution -1.693 1.135 -0.239 2.052 sum 22.572 -1.979 11.036 25.203 Atomic orbital electron populations 1.69901 1.06909 1.24954 1.63350 1.25345 0.95891 1.00141 1.06101 0.85646 0.78372 0.81772 0.77478 1.20900 1.23898 1.18498 1.19250 0.82313 0.93476 1.34043 0.90265 1.42817 1.02557 1.02946 1.89012 1.20436 0.92745 0.85837 0.92068 1.22712 0.81883 0.98485 0.97606 1.86974 1.22462 1.78345 1.49832 1.21726 0.91797 1.02465 0.99067 1.21807 1.02749 0.97946 0.94074 1.22822 0.79117 1.01380 1.01744 1.47797 1.10877 1.55250 1.17171 1.17369 0.84407 0.79303 0.81784 1.90796 1.20065 1.55076 1.79217 1.22110 0.91136 1.04250 0.98714 1.22060 1.01973 1.03384 0.95077 1.23387 0.83850 1.02714 1.02060 1.47212 1.09778 1.39474 1.18250 1.21825 0.86702 0.72842 0.82105 1.93158 1.95717 1.30700 1.96538 1.93158 1.93230 1.86702 1.42560 1.73034 1.20690 1.10849 1.02703 1.22033 1.00016 0.94234 0.84730 0.94640 0.80810 0.93690 0.91395 0.78114 0.87521 0.90475 0.86827 0.94695 0.84974 0.88844 0.82164 0.75973 0.76997 0.89774 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -1.00 -69.87 13.97 21.65 0.30 -69.57 16 2 C -0.09 -5.54 5.50 84.86 0.47 -5.07 16 3 Si 0.94 49.53 27.73 68.60 1.90 51.43 16 4 H -0.28 -14.38 7.11 99.48 0.71 -13.68 16 5 H -0.31 -17.11 7.11 99.48 0.71 -16.40 16 6 H -0.26 -12.44 6.52 99.48 0.65 -11.79 16 7 C -0.16 -9.47 8.55 84.03 0.72 -8.76 16 8 H 0.08 5.34 5.50 -2.91 -0.02 5.32 16 9 N -0.73 -34.15 4.55 -303.00 -1.38 -35.53 16 10 C 0.18 6.34 0.68 3.68 0.00 6.34 16 11 C 0.07 2.35 6.09 71.98 0.44 2.79 16 12 O -0.57 -23.23 10.05 -148.98 -1.50 -24.73 16 13 C -0.11 -2.68 4.77 30.62 0.15 -2.53 16 14 C -0.13 -2.98 5.90 30.53 0.18 -2.80 16 15 C 0.07 1.78 6.29 86.22 0.54 2.32 16 16 N -0.58 -20.96 2.90 -823.28 -2.38 -23.34 16 17 C 0.59 25.07 7.70 86.74 0.67 25.74 16 18 O -0.57 -30.60 16.36 -3.93 -0.06 -30.67 16 19 C 0.00 0.00 6.90 42.46 0.29 0.29 16 20 C -0.20 -6.08 10.81 22.41 0.24 -5.84 16 21 C 0.02 0.45 11.33 83.54 0.95 1.39 16 22 N -0.35 -7.12 3.56 -364.69 -1.30 -8.42 16 23 C 0.50 5.57 6.24 127.77 0.80 6.37 16 24 F -0.18 -2.53 17.46 44.97 0.79 -1.75 16 25 F -0.18 -2.11 17.46 44.97 0.79 -1.33 16 26 N -0.24 -6.22 8.31 -48.18 -0.40 -6.62 16 27 C 0.11 4.34 4.90 86.36 0.42 4.76 16 28 H 0.24 16.58 8.31 -92.70 -0.77 15.81 16 29 H 0.36 16.48 4.29 -92.71 -0.40 16.08 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.37 11.39 9.12 -74.06 -0.68 10.71 16 33 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.03 1.08 6.75 -2.39 -0.02 1.06 16 37 H 0.13 3.21 3.71 -87.05 -0.32 2.89 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.16 5.08 8.06 -2.91 -0.02 5.05 16 40 H 0.22 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.21 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.05 2.55 5.85 -2.38 -0.01 2.54 16 Total: -1.00 -94.36 353.53 2.26 -92.10 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.35 Total: 33.41 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 5.86 Total: 25.00 kcal Atomic # 7 Polarization: -138.31 SS G_CDS: -5.16 Total: -143.47 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -1.56 Total: -55.39 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 1.57 Total: -3.07 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.90 Total: 51.43 kcal Total: -94.36 2.26 -92.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502571120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.510 kcal (2) G-P(sol) polarization free energy of solvation -94.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds