Wall clock time and date at job start Wed Apr 1 2020 02:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38387 * 119.92070 * 2 1 4 4 C 1.38338 * 120.30020 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14636 * 359.79023 * 4 3 2 6 6 C 1.50704 * 120.07190 * 180.23442 * 5 4 3 7 7 C 1.39594 * 119.85040 * 0.46022 * 5 4 3 8 8 C 1.47642 * 120.14707 * 179.78932 * 7 5 4 9 9 N 1.29077 * 125.86662 * 359.75281 * 8 7 5 10 10 O 1.41395 * 112.87447 * 180.29653 * 9 8 7 11 11 C 1.44204 * 107.59087 * 342.50482 * 10 9 8 12 12 H 1.09001 * 110.97502 * 267.28806 * 11 10 9 13 13 C 1.50704 * 110.96994 * 143.51929 * 11 10 9 14 14 O 1.21284 * 119.99939 * 356.44659 * 13 11 10 15 15 N 1.34774 * 119.99998 * 176.45230 * 13 11 10 16 16 C 1.47066 * 136.05790 * 359.63322 * 15 13 11 17 17 C 1.53757 * 87.88903 * 152.96045 * 16 15 13 18 18 O 1.42901 * 114.57448 * 272.66044 * 17 16 15 19 19 C 1.50700 * 114.08677 * 139.77806 * 17 16 15 20 20 H 1.07995 * 120.00093 * 266.55920 * 19 17 16 21 21 C 1.37888 * 119.99779 * 86.56069 * 19 17 16 22 22 N 1.31515 * 119.99440 * 180.02562 * 21 19 17 23 23 Si 1.86795 * 120.00166 * 359.97438 * 21 19 17 24 24 H 1.48498 * 109.46902 * 89.99966 * 23 21 19 25 25 H 1.48500 * 109.47246 * 210.00098 * 23 21 19 26 26 H 1.48501 * 109.47033 * 330.00310 * 23 21 19 27 27 C 1.47071 * 136.05908 * 179.97438 * 15 13 11 28 28 C 1.51683 * 125.86401 * 179.72739 * 8 7 5 29 29 C 1.37928 * 119.92820 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47140 * 270.01885 * 1 2 3 31 31 H 1.09001 * 109.47510 * 30.02417 * 1 2 3 32 32 H 1.09002 * 109.47061 * 150.02011 * 1 2 3 33 33 H 1.08001 * 119.85229 * 359.97438 * 3 2 1 34 34 H 1.07994 * 119.92559 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.46654 * 270.22810 * 6 5 4 36 36 H 1.09000 * 109.47308 * 30.23435 * 6 5 4 37 37 H 1.09006 * 109.46821 * 150.23472 * 6 5 4 38 38 H 1.09003 * 113.46527 * 267.68976 * 16 15 13 39 39 H 1.09004 * 113.46775 * 38.12993 * 16 15 13 40 40 H 0.96702 * 113.99974 * 273.67459 * 18 17 16 41 41 H 0.97001 * 119.99568 * 180.02562 * 22 21 19 42 42 H 1.09002 * 113.46492 * 321.86305 * 27 15 13 43 43 H 1.08996 * 113.46640 * 92.30606 * 27 15 13 44 44 H 1.09005 * 110.79638 * 313.68064 * 28 8 7 45 45 H 1.09005 * 110.79761 * 76.95813 * 28 8 7 46 46 H 1.07996 * 120.07614 * 0.04127 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1994 0.0000 4 6 3.5806 1.2086 0.0005 5 6 4.2814 0.0201 0.0054 6 6 5.7884 0.0320 0.0113 7 6 3.5914 -1.1934 0.0001 8 6 4.3348 -2.4691 0.0006 9 7 5.6193 -2.5958 0.0012 10 8 6.0383 -3.9463 -0.0052 11 6 4.9150 -4.7531 0.4030 12 1 4.9289 -4.9253 1.4792 13 6 4.8866 -6.0583 -0.3497 14 8 5.7055 -6.2759 -1.2174 15 7 3.9510 -6.9838 -0.0588 16 6 2.8331 -7.0975 0.8900 17 6 2.1574 -8.0519 -0.1083 18 8 1.3576 -7.4053 -1.1004 19 6 1.4717 -9.2298 0.5346 20 1 2.0002 -10.1643 0.6519 21 6 0.1695 -9.1145 0.9731 22 7 -0.4287 -10.1423 1.5347 23 14 -0.7444 -7.4980 0.7709 24 1 -1.4461 -7.4865 -0.5378 25 1 -1.7365 -7.3498 1.8659 26 1 0.2229 -6.3725 0.8237 27 6 3.6024 -8.3268 -0.5463 28 6 3.7201 -3.8558 0.0012 29 6 2.1951 -1.1954 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6535 2.1326 -0.0004 34 1 4.1131 2.1481 0.0009 35 1 6.1556 0.0371 -1.0149 36 1 6.1427 0.9237 0.5286 37 1 6.1567 -0.8563 0.5246 38 1 3.1084 -7.5763 1.8298 39 1 2.2903 -6.1635 1.0353 40 1 0.4478 -7.2334 -0.8215 41 1 -1.3449 -10.0613 1.8428 42 1 3.7148 -8.4399 -1.6246 43 1 4.0806 -9.1298 0.0145 44 1 2.9199 -3.9241 0.7381 45 1 3.3531 -4.1168 -0.9915 46 1 1.6552 -2.1307 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650022082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:13 Heat of formation + Delta-G solvation = 22.141464 kcal Electronic energy + Delta-G solvation = -30149.946911 eV Core-core repulsion = 26008.964551 eV Total energy + Delta-G solvation = -4140.982359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87248 -39.93985 -39.24712 -37.53836 -34.76511 -34.65550 -33.28350 -32.66166 -31.43146 -30.58294 -29.57877 -28.79875 -25.96893 -25.42960 -25.28470 -24.01067 -23.71634 -21.51971 -20.61531 -19.65952 -18.83977 -17.73999 -17.11259 -16.87256 -16.43951 -16.33549 -15.95333 -15.70494 -15.27796 -15.07280 -14.59063 -14.42898 -13.91647 -13.82185 -13.64659 -13.53528 -13.42537 -13.24637 -13.12543 -12.97925 -12.72681 -12.63234 -12.48717 -12.33986 -12.23807 -11.95652 -11.76395 -11.64306 -11.40243 -11.28710 -11.07295 -10.69351 -10.51331 -10.28976 -10.22803 -9.77728 -9.37086 -9.16618 -8.97790 -8.81595 -8.65025 -8.22808 -6.52857 -4.59519 0.41850 1.02242 1.97379 2.51098 2.80081 2.88118 2.89139 3.04713 3.31277 3.43109 3.79575 3.91278 4.20369 4.32914 4.46671 4.47839 4.55541 4.62543 4.68200 4.83659 4.86647 4.92865 4.95328 5.18478 5.23443 5.31185 5.34854 5.41787 5.44557 5.47216 5.49683 5.62933 5.66098 5.75051 5.87064 5.93593 6.01334 6.08082 6.11728 6.22070 6.24088 6.27187 6.31459 6.46809 6.61368 7.05995 7.15748 7.89476 8.09265 8.35682 8.40080 8.51733 9.03686 10.59292 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.003501 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.988783 B = 7996.784115 C =10131.688417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.096 4.096 4 C -0.123 4.123 5 C -0.047 4.047 6 C -0.133 4.133 7 C -0.043 4.043 8 C 0.130 3.870 9 N -0.278 5.278 10 O -0.170 6.170 11 C 0.036 3.964 12 H 0.110 0.890 13 C 0.543 3.457 14 O -0.532 6.532 15 N -0.634 5.634 16 C 0.057 3.943 17 C 0.198 3.802 18 O -0.549 6.549 19 C -0.535 4.535 20 H 0.094 0.906 21 C 0.080 3.920 22 N -0.873 5.873 23 Si 0.860 3.140 24 H -0.265 1.265 25 H -0.283 1.283 26 H -0.259 1.259 27 C 0.125 3.875 28 C -0.136 4.136 29 C -0.081 4.081 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.352 0.648 41 H 0.272 0.728 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 21.551 1.133 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.115 4.115 4 C -0.141 4.141 5 C -0.049 4.049 6 C -0.189 4.189 7 C -0.044 4.044 8 C -0.058 4.058 9 N -0.020 5.020 10 O -0.188 6.188 11 C -0.027 4.027 12 H 0.128 0.872 13 C 0.330 3.670 14 O -0.408 6.408 15 N -0.369 5.369 16 C -0.066 4.066 17 C 0.157 3.843 18 O -0.360 6.360 19 C -0.572 4.572 20 H 0.112 0.888 21 C -0.126 4.126 22 N -0.508 5.508 23 Si 0.689 3.311 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.184 1.184 27 C 0.003 3.997 28 C -0.176 4.176 29 C -0.101 4.101 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.204 0.796 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.488 21.827 0.323 22.106 hybrid contribution -1.924 0.294 0.483 2.006 sum 1.564 22.121 0.806 22.191 Atomic orbital electron populations 1.20810 0.90565 1.03168 1.02665 1.19814 0.96448 0.92615 1.00658 1.21216 0.94141 0.97691 0.98473 1.20987 0.94046 0.97453 1.01599 1.20132 0.96799 0.91730 0.96278 1.21235 0.90154 1.04194 1.03333 1.17693 0.92324 0.88472 1.05904 1.24239 0.92172 0.94567 0.94866 1.78475 1.12969 0.97265 1.13259 1.91374 1.29880 1.10047 1.87476 1.23394 0.87059 0.91896 1.00310 0.87231 1.19295 0.80028 0.83916 0.83787 1.90717 1.38342 1.79101 1.32688 1.49619 1.30320 1.17664 1.39292 1.24643 0.85275 1.00711 0.95988 1.20251 0.88627 0.90054 0.85400 1.86481 1.24780 1.81665 1.43105 1.21134 0.98638 0.97927 1.39541 0.88821 1.25018 0.97213 0.96377 0.93958 1.69845 1.13302 1.29796 1.37846 0.87311 0.80816 0.84307 0.78696 1.19187 1.20911 1.18424 1.23201 0.93011 0.82739 1.00734 1.22921 0.99792 0.88755 1.06117 1.21156 0.92196 0.98590 0.98186 0.90907 0.91346 0.91152 0.85595 0.85366 0.90606 0.91634 0.88311 0.88349 0.91780 0.79563 0.91742 0.90732 0.88441 0.87073 0.87029 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.10 -0.83 5.87 -104.68 -0.61 -1.44 16 3 C -0.10 -0.77 9.69 -39.49 -0.38 -1.15 16 4 C -0.12 -1.05 9.69 -39.64 -0.38 -1.44 16 5 C -0.05 -0.50 5.91 -104.21 -0.62 -1.12 16 6 C -0.13 -1.35 9.18 36.01 0.33 -1.02 16 7 C -0.04 -0.50 5.87 -105.03 -0.62 -1.11 16 8 C 0.13 1.75 7.05 -79.43 -0.56 1.19 16 9 N -0.28 -4.30 8.97 35.30 0.32 -3.98 16 10 O -0.17 -3.07 11.82 -30.21 -0.36 -3.43 16 11 C 0.04 0.57 4.06 -26.97 -0.11 0.46 16 12 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 13 C 0.54 10.55 7.39 -10.98 -0.08 10.47 16 14 O -0.53 -12.29 17.36 -13.28 -0.23 -12.52 16 15 N -0.63 -12.00 3.69 -185.05 -0.68 -12.69 16 16 C 0.06 1.04 7.29 -8.37 -0.06 0.97 16 17 C 0.20 4.20 1.10 -91.13 -0.10 4.10 16 18 O -0.55 -12.03 13.34 -35.23 -0.47 -12.50 16 19 C -0.53 -13.02 9.26 -34.44 -0.32 -13.34 16 20 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 21 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.87 -23.38 13.96 55.43 0.77 -22.61 16 23 Si 0.86 17.60 24.42 -169.99 -4.15 13.45 16 24 H -0.27 -5.34 7.06 56.52 0.40 -4.94 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.26 -4.80 5.51 56.52 0.31 -4.48 16 27 C 0.12 2.47 8.02 -8.52 -0.07 2.40 16 28 C -0.14 -1.86 5.81 -26.48 -0.15 -2.01 16 29 C -0.08 -0.82 9.26 -39.17 -0.36 -1.18 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.10 1.20 5.19 -51.93 -0.27 0.93 16 38 H 0.10 1.68 8.10 -51.93 -0.42 1.26 16 39 H 0.06 1.06 6.94 -51.93 -0.36 0.70 16 40 H 0.35 7.33 3.16 45.56 0.14 7.47 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.10 1.79 8.10 -51.93 -0.42 1.36 16 44 H 0.11 1.24 7.75 -51.93 -0.40 0.84 16 45 H 0.11 1.62 7.91 -51.93 -0.41 1.21 16 46 H 0.13 1.19 7.37 -52.49 -0.39 0.81 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -30.88 378.00 -8.92 -39.80 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.97 Total: 11.51 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.84 Total: -2.73 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.41 Total: -39.27 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -1.06 Total: -28.45 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -4.15 Total: 13.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.88 -8.92 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650022082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.937 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds