Wall clock time and date at job start Wed Apr 1 2020 02:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37885 * 120.00833 * 2 1 4 4 C 1.38643 * 120.65050 * 180.02562 * 3 2 1 5 5 C 1.37885 * 120.20284 * 359.97438 * 4 3 2 6 6 C 1.39068 * 119.62912 * 359.97438 * 5 4 3 7 7 C 1.47657 * 134.26836 * 179.97438 * 6 5 4 8 8 C 1.47076 * 127.13734 * 359.97438 * 7 6 5 9 9 O 1.21651 * 120.00424 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00130 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00063 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47061 * 179.97438 * 11 10 8 13 13 O 1.42904 * 110.63856 * 66.68565 * 12 11 10 14 14 C 1.55150 * 110.72370 * 190.02379 * 12 11 10 15 15 C 1.54906 * 101.58660 * 153.86717 * 14 12 11 16 16 N 1.47425 * 104.83150 * 322.99072 * 15 14 12 17 17 C 1.36938 * 125.65038 * 204.16282 * 16 15 14 18 18 H 1.08000 * 119.99863 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99981 * 359.95609 * 17 16 15 20 20 N 1.31624 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99788 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47136 * 60.00501 * 21 19 17 23 23 H 1.48503 * 109.47105 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47433 * 300.00081 * 21 19 17 25 25 C 1.47027 * 108.70045 * 24.12792 * 16 15 14 26 26 C 1.36048 * 105.72253 * 180.02562 * 7 6 5 27 27 O 1.33813 * 109.86037 * 0.02562 * 26 7 6 28 28 C 1.34912 * 111.34536 * 359.97438 * 27 26 7 29 29 H 1.08996 * 109.47454 * 270.01642 * 1 2 3 30 30 H 1.09000 * 109.47368 * 30.02312 * 1 2 3 31 31 H 1.09012 * 109.46820 * 150.01947 * 1 2 3 32 32 H 1.08000 * 119.67483 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.89721 * 180.26270 * 4 3 2 34 34 H 1.07999 * 120.18109 * 180.02562 * 5 4 3 35 35 H 0.97002 * 119.99523 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47285 * 299.99902 * 11 10 8 37 37 H 1.09000 * 109.47065 * 60.00421 * 11 10 8 38 38 H 0.96694 * 114.00434 * 300.70221 * 13 12 11 39 39 H 1.08999 * 111.00525 * 271.94161 * 14 12 11 40 40 H 1.09002 * 111.00496 * 35.78977 * 14 12 11 41 41 H 1.09004 * 110.37277 * 204.15421 * 15 14 12 42 42 H 1.08999 * 110.36828 * 81.82630 * 15 14 12 43 43 H 0.96992 * 119.99918 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.88286 * 239.52349 * 25 16 15 45 45 H 1.08998 * 109.88429 * 118.36188 * 25 16 15 46 46 H 1.08002 * 125.07040 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1940 0.0000 4 6 3.5830 1.2096 -0.0005 5 6 4.2899 0.0257 -0.0005 6 6 3.6046 -1.1843 0.0005 7 6 4.0167 -2.6022 0.0004 8 6 5.3904 -3.1277 -0.0016 9 8 6.3349 -2.3610 -0.0029 10 7 5.6028 -4.4586 -0.0020 11 6 6.9711 -4.9820 -0.0034 12 6 6.9321 -6.5115 -0.0029 13 8 6.3888 -7.0019 -1.2303 14 6 8.3469 -7.0967 0.2482 15 6 8.0079 -8.4726 0.8739 16 7 6.8225 -8.2233 1.7141 17 6 6.4378 -8.9724 2.7940 18 1 5.5492 -8.7059 3.3470 19 6 7.1896 -10.0744 3.1775 20 7 8.2726 -10.3991 2.5036 21 14 6.6651 -11.0958 4.6510 22 1 5.3097 -11.6525 4.4101 23 1 7.6291 -12.2076 4.8509 24 1 6.6401 -10.2389 5.8636 25 6 6.1222 -7.0367 1.2011 26 6 2.8620 -3.3217 0.0013 27 8 1.8106 -2.4940 0.0014 28 6 2.2020 -1.2029 0.0012 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8903 -0.5136 32 1 1.6514 2.1263 -0.0004 33 1 4.1108 2.1518 0.0038 34 1 5.3698 0.0383 -0.0005 35 1 4.8497 -5.0699 -0.0006 36 1 7.4932 -4.6318 -0.8939 37 1 7.4949 -4.6320 0.8862 38 1 5.4900 -6.6955 -1.4128 39 1 8.8919 -7.2169 -0.6881 40 1 8.9076 -6.4768 0.9479 41 1 8.8383 -8.8265 1.4850 42 1 7.7743 -9.1970 0.0937 43 1 8.7981 -11.1689 2.7718 44 1 6.0721 -6.2718 1.9761 45 1 5.1166 -7.3092 0.8809 46 1 2.8028 -4.4001 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699896364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:49 Heat of formation + Delta-G solvation = -27.146936 kcal Electronic energy + Delta-G solvation = -29506.530756 eV Core-core repulsion = 25363.411091 eV Total energy + Delta-G solvation = -4143.119665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.91426 -39.82523 -38.43668 -38.37324 -35.18301 -34.29933 -33.90003 -32.20471 -31.78859 -30.15032 -29.48091 -28.11822 -27.21583 -25.87490 -24.31805 -23.33443 -22.68063 -22.19218 -20.55966 -19.98677 -19.79026 -18.29579 -17.52041 -16.98053 -16.75363 -16.65040 -16.01597 -15.83125 -15.43524 -15.21389 -14.76813 -14.64153 -14.21366 -14.10262 -13.82652 -13.81922 -13.53433 -13.27998 -13.09955 -12.96023 -12.68996 -12.34400 -12.19337 -12.13380 -12.00725 -11.62395 -11.29010 -11.08307 -10.89685 -10.82480 -10.43865 -10.29591 -10.23558 -10.20362 -9.88912 -9.75714 -9.46871 -9.18606 -8.95862 -8.68708 -8.44351 -6.90415 -5.69988 -3.12754 0.44065 0.99801 1.46173 2.29795 2.96465 3.06398 3.37365 3.41495 3.43116 3.46388 4.04724 4.21411 4.40002 4.41433 4.42890 4.53502 4.75703 4.89482 4.95755 5.02445 5.08383 5.13437 5.15048 5.23713 5.34099 5.42581 5.45206 5.55478 5.59702 5.83527 5.87147 5.93367 5.98392 6.06507 6.16501 6.18758 6.24044 6.28207 6.34467 6.45341 6.54592 6.57919 6.73123 7.32127 7.51825 7.56532 7.80261 7.88235 8.07599 8.30457 9.16128 9.76559 10.40584 11.33639 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.002285 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.821386 B =12251.395622 C =13119.381268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.098 4.098 4 C -0.128 4.128 5 C -0.066 4.066 6 C -0.088 4.088 7 C -0.226 4.226 8 C 0.588 3.412 9 O -0.533 6.533 10 N -0.723 5.723 11 C 0.106 3.894 12 C 0.105 3.895 13 O -0.542 6.542 14 C -0.128 4.128 15 C 0.156 3.844 16 N -0.599 5.599 17 C -0.227 4.227 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.916 3.084 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.116 3.884 26 C 0.068 3.932 27 O -0.180 6.180 28 C 0.045 3.955 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.396 0.604 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.364 0.636 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.019 0.981 43 H 0.254 0.746 44 H 0.031 0.969 45 H 0.022 0.978 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.047 20.925 -7.586 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.116 4.116 4 C -0.147 4.147 5 C -0.084 4.084 6 C -0.089 4.089 7 C -0.230 4.230 8 C 0.376 3.624 9 O -0.411 6.411 10 N -0.375 5.375 11 C -0.018 4.018 12 C 0.063 3.937 13 O -0.347 6.347 14 C -0.167 4.167 15 C 0.031 3.969 16 N -0.325 5.325 17 C -0.356 4.356 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.011 4.011 26 C -0.001 4.001 27 O -0.079 6.079 28 C -0.001 4.001 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.210 0.790 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.040 0.960 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.960 20.906 -7.496 25.225 hybrid contribution -1.084 -0.723 0.790 1.524 sum -13.044 20.183 -6.706 24.950 Atomic orbital electron populations 1.20750 0.90224 1.03195 1.02775 1.18791 0.96242 0.88274 1.03955 1.20853 0.94227 0.96380 1.00117 1.21107 0.93922 0.98082 1.01541 1.20715 1.00975 0.89790 0.96923 1.19391 0.92281 0.92717 1.04500 1.21001 0.93902 0.92869 1.15266 1.17051 0.86953 0.82070 0.76371 1.90787 1.43357 1.57121 1.49810 1.45846 1.09688 1.06258 1.75671 1.22135 0.82358 0.93889 1.03391 1.22575 0.97395 0.89158 0.84553 1.86640 1.33344 1.74882 1.39784 1.23056 0.92100 1.00712 1.00801 1.21954 0.92215 0.89722 0.93011 1.44398 1.26920 1.28954 1.32247 1.18999 1.07589 1.05819 1.03146 0.90584 1.24802 0.97617 0.98549 0.99513 1.69777 1.17253 1.28797 1.40981 0.86135 0.77521 0.79660 0.82047 1.21193 1.21489 1.21121 1.21925 0.94570 0.91262 0.93372 1.24523 0.83462 0.96075 0.96019 1.83844 1.34585 1.14673 1.74831 1.19368 0.92377 0.83330 1.05024 0.90858 0.90995 0.91287 0.84679 0.85004 0.84413 0.76970 0.90434 0.90046 0.79033 0.91002 0.90522 0.87381 0.96334 0.93541 0.95113 0.96025 0.76585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.07 -0.65 5.89 -104.50 -0.62 -1.27 16 3 C -0.10 -0.77 9.66 -39.56 -0.38 -1.15 16 4 C -0.13 -1.13 10.04 -39.56 -0.40 -1.52 16 5 C -0.07 -0.76 9.88 -39.40 -0.39 -1.15 16 6 C -0.09 -1.09 6.29 -104.98 -0.66 -1.75 16 7 C -0.23 -2.70 6.31 -103.26 -0.65 -3.35 16 8 C 0.59 8.13 7.80 -12.67 -0.10 8.03 16 9 O -0.53 -9.17 16.29 5.23 0.09 -9.09 16 10 N -0.72 -8.72 5.12 -61.49 -0.31 -9.03 16 11 C 0.11 1.51 4.80 -4.04 -0.02 1.49 16 12 C 0.10 1.73 0.93 -88.79 -0.08 1.64 16 13 O -0.54 -8.62 13.10 -35.23 -0.46 -9.08 16 14 C -0.13 -2.40 6.26 -24.59 -0.15 -2.55 16 15 C 0.16 3.76 5.88 -2.53 -0.01 3.75 16 16 N -0.60 -14.99 3.39 -170.07 -0.58 -15.56 16 17 C -0.23 -6.23 10.27 -15.06 -0.15 -6.38 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -26.56 10.09 55.49 0.56 -26.00 16 21 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.12 2.23 5.76 -3.06 -0.02 2.22 16 26 C 0.07 0.61 11.52 29.95 0.34 0.95 16 27 O -0.18 -1.85 10.53 5.31 0.06 -1.80 16 28 C 0.05 0.50 7.05 -38.56 -0.27 0.23 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.14 1.66 7.54 -52.49 -0.40 1.27 16 35 H 0.40 3.72 6.39 -40.82 -0.26 3.46 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 38 H 0.36 4.14 8.44 45.56 0.38 4.52 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.37 7.96 -51.93 -0.41 0.95 16 41 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 45 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 46 H 0.22 1.01 7.41 -52.49 -0.39 0.63 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -34.90 381.77 -8.77 -43.67 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.54 Total: 5.89 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.30 Total: -1.53 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.33 Total: -50.60 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.32 Total: -19.97 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.90 -8.77 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699896364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.524 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds