Wall clock time and date at job start Wed Apr 1 2020 02:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37885 * 120.00833 * 2 1 4 4 C 1.38643 * 120.65050 * 180.02562 * 3 2 1 5 5 C 1.37885 * 120.20284 * 359.97438 * 4 3 2 6 6 C 1.39068 * 119.62912 * 359.97438 * 5 4 3 7 7 C 1.47657 * 134.26836 * 179.97438 * 6 5 4 8 8 C 1.47076 * 127.13734 * 359.97438 * 7 6 5 9 9 O 1.21651 * 120.00424 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00130 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00063 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47061 * 179.97438 * 11 10 8 13 13 O 1.42904 * 110.63856 * 66.68565 * 12 11 10 14 14 C 1.55150 * 110.72370 * 190.02379 * 12 11 10 15 15 C 1.54906 * 101.58660 * 153.86717 * 14 12 11 16 16 N 1.47425 * 104.83150 * 322.99072 * 15 14 12 17 17 C 1.36938 * 125.65038 * 204.16282 * 16 15 14 18 18 H 1.08000 * 119.99863 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99981 * 359.95609 * 17 16 15 20 20 N 1.31624 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99788 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47136 * 60.00501 * 21 19 17 23 23 H 1.48503 * 109.47105 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47433 * 300.00081 * 21 19 17 25 25 C 1.47027 * 108.70045 * 24.12792 * 16 15 14 26 26 C 1.36048 * 105.72253 * 180.02562 * 7 6 5 27 27 O 1.33813 * 109.86037 * 0.02562 * 26 7 6 28 28 C 1.34912 * 111.34536 * 359.97438 * 27 26 7 29 29 H 1.08996 * 109.47454 * 270.01642 * 1 2 3 30 30 H 1.09000 * 109.47368 * 30.02312 * 1 2 3 31 31 H 1.09012 * 109.46820 * 150.01947 * 1 2 3 32 32 H 1.08000 * 119.67483 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.89721 * 180.26270 * 4 3 2 34 34 H 1.07999 * 120.18109 * 180.02562 * 5 4 3 35 35 H 0.97002 * 119.99523 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47285 * 299.99902 * 11 10 8 37 37 H 1.09000 * 109.47065 * 60.00421 * 11 10 8 38 38 H 0.96694 * 114.00434 * 300.70221 * 13 12 11 39 39 H 1.08999 * 111.00525 * 271.94161 * 14 12 11 40 40 H 1.09002 * 111.00496 * 35.78977 * 14 12 11 41 41 H 1.09004 * 110.37277 * 204.15421 * 15 14 12 42 42 H 1.08999 * 110.36828 * 81.82630 * 15 14 12 43 43 H 0.96992 * 119.99918 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.88286 * 239.52349 * 25 16 15 45 45 H 1.08998 * 109.88429 * 118.36188 * 25 16 15 46 46 H 1.08002 * 125.07040 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1940 0.0000 4 6 3.5830 1.2096 -0.0005 5 6 4.2899 0.0257 -0.0005 6 6 3.6046 -1.1843 0.0005 7 6 4.0167 -2.6022 0.0004 8 6 5.3904 -3.1277 -0.0016 9 8 6.3349 -2.3610 -0.0029 10 7 5.6028 -4.4586 -0.0020 11 6 6.9711 -4.9820 -0.0034 12 6 6.9321 -6.5115 -0.0029 13 8 6.3888 -7.0019 -1.2303 14 6 8.3469 -7.0967 0.2482 15 6 8.0079 -8.4726 0.8739 16 7 6.8225 -8.2233 1.7141 17 6 6.4378 -8.9724 2.7940 18 1 5.5492 -8.7059 3.3470 19 6 7.1896 -10.0744 3.1775 20 7 8.2726 -10.3991 2.5036 21 14 6.6651 -11.0958 4.6510 22 1 5.3097 -11.6525 4.4101 23 1 7.6291 -12.2076 4.8509 24 1 6.6401 -10.2389 5.8636 25 6 6.1222 -7.0367 1.2011 26 6 2.8620 -3.3217 0.0013 27 8 1.8106 -2.4940 0.0014 28 6 2.2020 -1.2029 0.0012 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8903 -0.5136 32 1 1.6514 2.1263 -0.0004 33 1 4.1108 2.1518 0.0038 34 1 5.3698 0.0383 -0.0005 35 1 4.8497 -5.0699 -0.0006 36 1 7.4932 -4.6318 -0.8939 37 1 7.4949 -4.6320 0.8862 38 1 5.4900 -6.6955 -1.4128 39 1 8.8919 -7.2169 -0.6881 40 1 8.9076 -6.4768 0.9479 41 1 8.8383 -8.8265 1.4850 42 1 7.7743 -9.1970 0.0937 43 1 8.7981 -11.1689 2.7718 44 1 6.0721 -6.2718 1.9761 45 1 5.1166 -7.3092 0.8809 46 1 2.8028 -4.4001 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699896364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:48 Heat of formation + Delta-G solvation = -52.275856 kcal Electronic energy + Delta-G solvation = -29507.620428 eV Core-core repulsion = 25363.411091 eV Total energy + Delta-G solvation = -4144.209336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.67203 -41.03025 -39.76495 -39.09277 -36.81770 -35.46194 -34.63702 -33.98687 -32.61611 -31.42788 -30.74395 -29.53457 -27.81234 -27.52813 -25.73584 -24.42814 -23.40810 -23.11161 -22.18806 -21.36926 -20.96143 -19.20739 -18.86437 -18.25989 -17.90267 -17.43860 -17.01874 -16.82060 -16.74375 -16.36894 -16.30804 -15.71617 -15.53549 -15.31984 -15.01979 -14.83357 -14.50917 -14.34603 -14.29802 -13.90523 -13.79250 -13.67568 -13.29337 -13.23046 -12.94955 -12.88254 -12.73426 -12.58515 -12.38366 -12.10193 -12.04912 -11.99991 -11.81024 -11.63856 -11.19838 -11.08794 -10.92039 -10.73268 -10.28250 -9.68111 -9.17751 -8.90711 -7.77664 -5.22653 -0.29427 0.26247 0.65000 1.47030 1.50013 1.56403 1.59075 1.94053 2.13257 2.48880 2.69045 3.15518 3.31524 3.36017 3.37098 3.47824 3.68156 3.70340 3.90311 3.93679 3.96085 4.13706 4.29860 4.31673 4.43679 4.46820 4.56167 4.60379 4.67051 4.77983 4.80116 4.82795 4.93595 4.98385 4.98726 5.07111 5.21376 5.26244 5.28712 5.39682 5.46148 5.47062 5.56368 5.61186 5.79619 6.01172 6.29041 6.36636 6.80174 7.06476 7.09111 7.76528 8.40064 9.24210 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.002285 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.821386 B =12251.395622 C =13119.381268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 C -0.097 4.097 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.114 4.114 7 C -0.264 4.264 8 C 0.591 3.409 9 O -0.576 6.576 10 N -0.710 5.710 11 C 0.121 3.879 12 C 0.127 3.873 13 O -0.553 6.553 14 C -0.121 4.121 15 C 0.159 3.841 16 N -0.622 5.622 17 C -0.240 4.240 18 H 0.084 0.916 19 C -0.068 4.068 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.277 1.277 25 C 0.111 3.889 26 C 0.100 3.900 27 O -0.181 6.181 28 C 0.024 3.976 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.386 0.614 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.074 0.926 42 H -0.014 1.014 43 H 0.247 0.753 44 H 0.037 0.963 45 H 0.041 0.959 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.963 22.486 -7.740 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.269 4.269 8 C 0.380 3.620 9 O -0.457 6.457 10 N -0.362 5.362 11 C -0.004 4.004 12 C 0.085 3.915 13 O -0.360 6.360 14 C -0.160 4.160 15 C 0.034 3.966 16 N -0.349 5.349 17 C -0.368 4.368 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.809 3.191 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.014 4.014 26 C 0.031 3.969 27 O -0.079 6.079 28 C -0.022 4.022 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.174 0.826 34 H 0.136 0.864 35 H 0.248 0.752 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.235 0.765 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.004 0.996 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -14.944 22.487 -7.664 28.067 hybrid contribution -0.266 -1.149 0.797 1.423 sum -15.211 21.338 -6.867 27.089 Atomic orbital electron populations 1.20814 0.88219 1.04169 1.03540 1.19281 0.97801 0.87875 1.02521 1.21288 0.93874 0.97477 0.98782 1.21443 0.94694 0.98039 0.99623 1.20761 1.00381 0.91007 0.99620 1.19707 0.93365 0.93239 1.05271 1.20900 0.93689 0.93427 1.18872 1.17288 0.87350 0.81992 0.75347 1.90762 1.44799 1.58166 1.51972 1.45618 1.09341 1.06078 1.75183 1.21816 0.83517 0.91883 1.03154 1.22177 0.95278 0.90136 0.83912 1.86607 1.35217 1.75278 1.38934 1.22906 0.94059 0.97790 1.01240 1.21657 0.91190 0.92019 0.91703 1.44681 1.27878 1.30255 1.32051 1.19423 1.07602 1.06023 1.03796 0.89787 1.25662 0.97964 1.00092 1.02376 1.70042 1.18350 1.29005 1.42492 0.85115 0.77090 0.77849 0.79037 1.20304 1.22161 1.20267 1.22149 0.95348 0.89450 0.94489 1.25270 0.82125 0.97383 0.92101 1.83858 1.34846 1.14670 1.74574 1.19678 0.92054 0.84122 1.06344 0.90058 0.88780 0.91605 0.81136 0.82632 0.86351 0.75188 0.90097 0.91037 0.76468 0.89584 0.89632 0.90765 0.99609 0.94318 0.94501 0.94084 0.72347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 71.24 0.71 -0.39 16 2 C -0.07 -1.19 5.89 -19.78 -0.12 -1.30 16 3 C -0.10 -1.28 9.66 22.28 0.22 -1.06 16 4 C -0.12 -1.97 10.04 22.28 0.22 -1.75 16 5 C -0.10 -2.36 9.88 22.39 0.22 -2.14 16 6 C -0.11 -2.86 6.29 -20.10 -0.13 -2.98 16 7 C -0.26 -6.15 6.31 -18.98 -0.12 -6.27 16 8 C 0.59 16.08 7.80 86.56 0.68 16.76 16 9 O -0.58 -20.34 16.29 -4.19 -0.07 -20.41 16 10 N -0.71 -15.84 5.12 -466.70 -2.39 -18.23 16 11 C 0.12 3.25 4.80 86.38 0.41 3.67 16 12 C 0.13 3.98 0.93 -9.61 -0.01 3.97 16 13 O -0.55 -16.33 13.10 -148.98 -1.95 -18.28 16 14 C -0.12 -4.50 6.26 31.98 0.20 -4.30 16 15 C 0.16 7.91 5.88 86.85 0.51 8.42 16 16 N -0.62 -31.20 3.39 -691.98 -2.35 -33.55 16 17 C -0.24 -13.14 10.27 84.03 0.86 -12.28 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 20 N -0.95 -56.57 10.09 21.65 0.22 -56.35 16 21 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 C 0.11 4.12 5.76 86.73 0.50 4.62 16 26 C 0.10 1.56 11.52 67.31 0.78 2.34 16 27 O -0.18 -3.36 10.53 -3.93 -0.04 -3.40 16 28 C 0.02 0.51 7.05 22.93 0.16 0.67 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.06 0.71 8.09 -2.38 -0.02 0.69 16 32 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.12 3.14 7.54 -2.91 -0.02 3.11 16 35 H 0.41 6.48 6.39 -92.71 -0.59 5.89 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.07 2.12 8.03 -2.39 -0.02 2.11 16 38 H 0.39 7.52 8.44 -74.06 -0.62 6.90 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.09 3.02 7.96 -2.39 -0.02 3.00 16 41 H 0.07 4.19 5.87 -2.38 -0.01 4.18 16 42 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.04 1.35 7.82 -2.39 -0.02 1.33 16 45 H 0.04 1.39 8.07 -2.39 -0.02 1.37 16 46 H 0.26 1.34 7.41 -2.91 -0.02 1.32 16 Total: -1.00 -79.55 381.77 0.83 -78.73 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.19 Total: 19.73 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.57 Total: 4.59 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.52 Total: -108.13 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.06 Total: -42.09 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.55 0.83 -78.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699896364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.450 kcal (2) G-P(sol) polarization free energy of solvation -79.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds