Wall clock time and date at job start Wed Apr 1 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00335 * 2 1 4 4 H 1.48509 * 109.46977 * 240.00064 * 3 2 1 5 5 H 1.48500 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47321 * 120.00235 * 3 2 1 7 7 C 1.38814 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00181 * 190.90756 * 7 2 1 9 9 N 1.36940 * 119.99770 * 10.90149 * 7 2 1 10 10 C 1.46924 * 120.63099 * 31.67239 * 9 7 2 11 11 C 1.53193 * 108.77707 * 126.36510 * 10 9 7 12 12 C 1.53038 * 109.31378 * 54.63629 * 11 10 9 13 13 C 1.52995 * 109.46061 * 178.62708 * 12 11 10 14 14 O 1.42902 * 109.47118 * 180.72114 * 13 12 11 15 15 N 1.46507 * 109.46118 * 58.65086 * 12 11 10 16 16 C 1.34772 * 119.99630 * 62.82298 * 15 12 11 17 17 O 1.21613 * 120.00135 * 354.78499 * 16 15 12 18 18 C 1.47432 * 120.00037 * 175.05951 * 16 15 12 19 19 C 1.41288 * 126.41329 * 359.69158 * 18 16 15 20 20 N 1.30448 * 108.02303 * 179.81804 * 19 18 16 21 21 N 1.39939 * 108.89525 * 0.44143 * 20 19 18 22 22 C 1.46497 * 125.75264 * 179.69443 * 21 20 19 23 23 F 1.39898 * 109.47458 * 30.02362 * 22 21 20 24 24 F 1.39900 * 109.47197 * 150.02523 * 22 21 20 25 25 C 1.34259 * 108.49211 * 359.71412 * 21 20 19 26 26 C 1.53044 * 109.53789 * 298.63430 * 12 11 10 27 27 C 1.46930 * 120.63155 * 211.64507 * 9 7 2 28 28 H 0.97004 * 119.99647 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58692 * 6.57940 * 10 9 7 30 30 H 1.08999 * 109.70191 * 246.22498 * 10 9 7 31 31 H 1.08996 * 109.49660 * 294.68466 * 11 10 9 32 32 H 1.09000 * 109.49383 * 174.58622 * 11 10 9 33 33 H 1.09000 * 109.47446 * 300.71996 * 13 12 11 34 34 H 1.08997 * 109.46811 * 60.72202 * 13 12 11 35 35 H 0.96697 * 114.00032 * 180.02562 * 14 13 12 36 36 H 0.96991 * 120.00003 * 242.82129 * 15 12 11 37 37 H 1.07996 * 125.98851 * 359.97438 * 19 18 16 38 38 H 1.09001 * 109.46826 * 270.02066 * 22 21 20 39 39 H 1.07998 * 126.29314 * 180.02562 * 25 21 20 40 40 H 1.08998 * 109.50103 * 181.31280 * 26 12 11 41 41 H 1.09004 * 109.49734 * 301.41598 * 26 12 11 42 42 H 1.09002 * 109.58269 * 353.42135 * 27 9 7 43 43 H 1.09000 * 109.58606 * 113.84666 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0756 -1.2108 0.1764 9 7 1.3439 -2.3773 -0.2254 10 6 0.1651 -2.4137 -1.1015 11 6 0.3809 -3.4859 -2.1742 12 6 0.7029 -4.8206 -1.4981 13 6 0.8853 -5.9016 -2.5653 14 8 1.1694 -7.1515 -1.9335 15 7 -0.3985 -5.1948 -0.6075 16 6 -1.6252 -5.4286 -1.1143 17 8 -1.8417 -5.2373 -2.2957 18 6 -2.7065 -5.9104 -0.2355 19 6 -2.6063 -6.1772 1.1484 20 7 -3.7740 -6.5807 1.5671 21 7 -4.6613 -6.6009 0.4852 22 6 -6.0692 -7.0021 0.5402 23 9 -6.5880 -6.7111 1.8064 24 9 -6.7919 -6.3022 -0.4319 25 6 -4.0047 -6.1911 -0.6118 26 6 1.9922 -4.6845 -0.6850 27 6 1.7947 -3.6258 0.4046 28 1 -0.4850 0.8401 0.0004 29 1 0.0335 -1.4419 -1.5775 30 1 -0.7212 -2.6564 -0.5153 31 1 1.2108 -3.1946 -2.8179 32 1 -0.5247 -3.5899 -2.7718 33 1 -0.0288 -5.9907 -3.1523 34 1 1.7127 -5.6293 -3.2205 35 1 1.2976 -7.8843 -2.5513 36 1 -0.2449 -5.2744 0.3469 37 1 -1.7193 -6.0642 1.7539 38 1 -6.1495 -8.0728 0.3519 39 1 -4.4165 -6.0977 -1.6058 40 1 2.2336 -5.6416 -0.2226 41 1 2.8070 -4.3819 -1.3428 42 1 2.7384 -3.4538 0.9223 43 1 1.0428 -3.9687 1.1153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700339189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:50 Heat of formation + Delta-G solvation = -67.415138 kcal Electronic energy + Delta-G solvation = -31321.328040 eV Core-core repulsion = 26654.525436 eV Total energy + Delta-G solvation = -4666.802603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.71938 -47.83330 -41.52926 -39.86440 -37.30403 -36.08064 -34.01991 -33.18439 -31.84069 -30.83386 -30.04323 -29.66653 -26.76799 -26.44231 -23.88937 -23.20895 -22.23072 -21.68652 -20.87752 -20.15179 -18.99003 -18.53353 -18.50595 -17.76152 -17.16063 -16.87713 -16.34381 -15.33329 -15.19204 -15.00652 -14.86249 -14.61028 -14.47205 -14.26705 -14.14151 -13.99179 -13.69340 -13.45784 -13.38114 -13.08221 -12.98926 -12.65100 -12.59619 -12.33503 -11.83703 -11.38553 -11.36852 -11.19050 -10.84886 -10.71176 -10.37024 -10.25318 -10.09904 -10.02438 -9.93501 -9.71660 -9.53355 -9.06562 -9.02164 -8.48623 -8.44448 -6.57935 -5.75228 -3.23831 1.18115 1.48217 2.05228 3.05652 3.39500 3.41507 3.45317 3.45902 3.65759 3.73035 4.01730 4.39235 4.47363 4.51079 4.61711 4.99466 5.13450 5.27707 5.36422 5.45741 5.56248 5.61432 5.70079 5.80660 5.96294 6.08456 6.13054 6.24216 6.29298 6.38162 6.54805 6.68698 6.71626 6.81884 6.94187 7.09688 7.16534 7.43621 7.75644 7.78817 7.81977 7.97991 8.50807 8.62911 9.25435 9.86852 10.45226 11.32377 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003296 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.537347 B = 8491.959014 C = 9914.723795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.181 3.819 11 C -0.153 4.153 12 C 0.197 3.803 13 C 0.062 3.938 14 O -0.568 6.568 15 N -0.693 5.693 16 C 0.599 3.401 17 O -0.551 6.551 18 C -0.265 4.265 19 C 0.100 3.900 20 N -0.277 5.277 21 N -0.434 5.434 22 C 0.513 3.487 23 F -0.171 7.171 24 F -0.179 7.179 25 C 0.136 3.864 26 C -0.134 4.134 27 C 0.145 3.855 28 H 0.254 0.746 29 H 0.085 0.915 30 H 0.019 0.981 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.369 0.631 36 H 0.398 0.602 37 H 0.198 0.802 38 H 0.158 0.842 39 H 0.194 0.806 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 -18.476 -2.076 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.056 3.944 11 C -0.193 4.193 12 C 0.111 3.889 13 C -0.017 4.017 14 O -0.373 6.373 15 N -0.343 5.343 16 C 0.385 3.615 17 O -0.431 6.431 18 C -0.279 4.279 19 C -0.090 4.090 20 N -0.095 5.095 21 N -0.224 5.224 22 C 0.379 3.621 23 F -0.152 7.152 24 F -0.160 7.160 25 C -0.010 4.010 26 C -0.173 4.173 27 C 0.018 3.982 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.215 0.785 36 H 0.233 0.767 37 H 0.215 0.785 38 H 0.175 0.825 39 H 0.211 0.789 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -8.953 -18.218 -1.341 20.343 hybrid contribution 0.856 1.015 -0.703 1.502 sum -8.096 -17.204 -2.043 19.123 Atomic orbital electron populations 1.69973 1.05251 1.25556 1.53866 1.25162 0.95349 0.98352 1.00398 0.86366 0.78838 0.83383 0.78080 1.21000 1.21663 1.20901 1.19117 0.90823 0.84015 1.44602 0.91937 1.44026 1.32595 1.03344 1.51431 1.20655 0.88133 0.96495 0.89152 1.22613 1.01794 0.94470 1.00396 1.20293 0.86369 0.92840 0.89415 1.22770 0.99822 0.83828 0.95273 1.86472 1.94308 1.18790 1.37683 1.45641 1.08456 1.69200 1.10980 1.16995 0.81400 0.76599 0.86465 1.90689 1.82372 1.53654 1.16410 1.20534 0.95430 1.17101 0.94846 1.24322 0.96201 0.94666 0.93839 1.77305 0.99917 1.24666 1.07639 1.49737 1.09654 1.54817 1.08204 1.21299 0.72910 0.94970 0.72930 1.93140 1.85814 1.95112 1.41132 1.93152 1.76964 1.82695 1.63229 1.22916 0.91760 0.93308 0.93032 1.22251 0.95458 0.99906 0.99695 1.20904 0.97687 0.87220 0.92379 0.93577 0.89637 0.96309 0.92119 0.90798 0.91637 0.93536 0.78528 0.76719 0.78504 0.82525 0.78863 0.91653 0.91015 0.92547 0.96830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 11.09 55.49 0.62 -25.65 16 2 C 0.01 0.18 5.04 -17.43 -0.09 0.09 16 3 Si 0.90 21.68 29.57 -169.99 -5.03 16.66 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.06 1.66 7.85 -52.49 -0.41 1.24 16 9 N -0.59 -14.43 2.98 -172.31 -0.51 -14.94 16 10 C 0.18 4.35 4.99 -3.71 -0.02 4.33 16 11 C -0.15 -3.03 4.71 -26.61 -0.13 -3.16 16 12 C 0.20 3.31 0.44 -131.78 -0.06 3.25 16 13 C 0.06 0.91 5.68 37.16 0.21 1.12 16 14 O -0.57 -7.47 12.84 -35.23 -0.45 -7.93 16 15 N -0.69 -11.03 3.97 -48.63 -0.19 -11.22 16 16 C 0.60 9.76 7.22 -12.52 -0.09 9.67 16 17 O -0.55 -10.20 13.15 5.27 0.07 -10.13 16 18 C -0.26 -3.66 6.13 -105.07 -0.64 -4.31 16 19 C 0.10 1.25 11.51 -16.98 -0.20 1.05 16 20 N -0.28 -3.60 12.32 30.86 0.38 -3.22 16 21 N -0.43 -4.85 3.94 -66.10 -0.26 -5.11 16 22 C 0.51 3.98 6.62 59.85 0.40 4.37 16 23 F -0.17 -1.71 17.35 2.25 0.04 -1.67 16 24 F -0.18 -1.52 17.00 2.25 0.04 -1.48 16 25 C 0.14 1.62 10.84 -16.56 -0.18 1.44 16 26 C -0.13 -2.24 4.85 -26.61 -0.13 -2.37 16 27 C 0.14 2.87 6.24 -3.71 -0.02 2.85 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.09 2.35 6.13 -51.93 -0.32 2.03 16 30 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.51 6.24 -51.93 -0.32 1.19 16 33 H 0.07 1.04 6.16 -51.93 -0.32 0.72 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.37 3.22 9.12 45.56 0.42 3.64 16 36 H 0.40 5.81 6.15 -40.82 -0.25 5.56 16 37 H 0.20 1.95 7.51 -52.49 -0.39 1.56 16 38 H 0.16 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.06 0.99 7.66 -51.93 -0.40 0.60 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.11 7.93 -51.93 -0.41 0.69 16 43 H 0.01 0.27 6.88 -51.93 -0.36 -0.09 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -34.47 357.68 -5.42 -39.89 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.42 Total: 8.15 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -1.09 Total: 11.26 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.03 Total: -60.14 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.38 Total: -18.06 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.47 -5.42 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700339189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.525 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds