Wall clock time and date at job start Wed Apr 1 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00040 * 2 1 4 4 H 1.48506 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47262 * 299.99377 * 3 2 1 6 6 H 1.48498 * 109.47190 * 59.99623 * 3 2 1 7 7 C 1.38820 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99672 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.48973 * 179.97438 * 9 7 2 11 11 C 1.53944 * 86.11743 * 155.35911 * 10 9 7 12 12 C 1.53005 * 113.74029 * 269.15863 * 11 10 9 13 13 C 1.53005 * 109.46778 * 172.52519 * 12 11 10 14 14 O 1.42895 * 109.46686 * 175.18452 * 13 12 11 15 15 N 1.46497 * 113.74186 * 137.95257 * 11 10 9 16 16 C 1.34777 * 119.99621 * 74.86822 * 15 11 10 17 17 O 1.21564 * 120.00587 * 355.07213 * 16 15 11 18 18 C 1.47715 * 119.99330 * 175.34692 * 16 15 11 19 19 C 1.41510 * 126.51438 * 179.72403 * 18 16 15 20 20 C 1.35361 * 105.50154 * 179.97438 * 19 18 16 21 21 N 1.35037 * 107.23091 * 0.02562 * 20 19 18 22 22 C 1.46496 * 124.88455 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47365 * 124.99530 * 22 21 20 24 24 F 1.39901 * 109.47508 * 64.99836 * 23 22 21 25 25 F 1.39907 * 109.46936 * 184.99738 * 23 22 21 26 26 N 1.28471 * 110.22611 * 359.71802 * 21 20 19 27 27 C 1.47806 * 134.45821 * 359.86604 * 9 7 2 28 28 H 0.97000 * 119.99583 * 0.02562 * 1 2 3 29 29 H 1.09004 * 113.76961 * 41.06082 * 10 9 7 30 30 H 1.08998 * 113.87182 * 269.67504 * 10 9 7 31 31 H 1.08997 * 109.46530 * 292.51684 * 12 11 10 32 32 H 1.08996 * 109.47543 * 52.52289 * 12 11 10 33 33 H 1.09000 * 109.46995 * 295.18333 * 13 12 11 34 34 H 1.08998 * 109.47113 * 55.18370 * 13 12 11 35 35 H 0.96703 * 113.99730 * 179.97438 * 14 13 12 36 36 H 0.96996 * 120.00141 * 254.86659 * 15 11 10 37 37 H 1.08005 * 127.24380 * 0.02562 * 19 18 16 38 38 H 1.07997 * 126.38327 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.46657 * 244.99338 * 22 21 20 40 40 H 1.08995 * 109.47036 * 4.98821 * 22 21 20 41 41 H 1.09002 * 109.46803 * 304.99285 * 23 22 21 42 42 H 1.09001 * 113.77102 * 90.38203 * 27 9 7 43 43 H 1.08998 * 113.84139 * 318.91569 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0005 11 6 0.3470 -4.0830 0.6409 12 6 0.3644 -4.0561 2.1706 13 6 -1.0684 -4.1513 2.6987 14 8 -1.0455 -4.2392 4.1248 15 7 -0.3334 -5.2613 0.0980 16 6 0.0810 -6.4968 0.4421 17 8 1.0735 -6.6355 1.1303 18 6 -0.6674 -7.6827 -0.0223 19 6 -0.3545 -9.0356 0.2501 20 6 -1.3106 -9.7611 -0.3759 21 7 -2.1414 -8.8876 -0.9843 22 6 -3.3165 -9.2611 -1.7753 23 6 -4.5521 -8.5495 -1.2202 24 9 -4.4125 -7.1684 -1.3943 25 9 -5.6908 -8.9927 -1.9016 26 7 -1.7566 -7.6818 -0.7644 27 6 -0.1057 -2.7570 0.0025 28 1 -0.4849 0.8401 -0.0004 29 1 2.5623 -4.0325 0.6558 30 1 1.8326 -4.2368 -0.9962 31 1 0.9453 -4.9003 2.5421 32 1 0.8166 -3.1252 2.5126 33 1 -1.6260 -3.2642 2.3982 34 1 -1.5490 -5.0391 2.2876 35 1 -1.9218 -4.3021 4.5290 36 1 -1.0821 -5.1524 -0.5089 37 1 0.4726 -9.4103 0.8350 38 1 -1.3930 -10.8379 -0.3873 39 1 -3.1638 -8.9671 -2.8138 40 1 -3.4633 -10.3397 -1.7209 41 1 -4.6539 -8.7735 -0.1584 42 1 -0.5312 -2.8722 -0.9944 43 1 -0.7189 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700492261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:12 Heat of formation + Delta-G solvation = -41.076923 kcal Electronic energy + Delta-G solvation = -30714.051314 eV Core-core repulsion = 26048.390821 eV Total energy + Delta-G solvation = -4665.660493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.46585 -47.44501 -42.89694 -39.81154 -37.66836 -36.30319 -34.51627 -33.58652 -31.92518 -30.94254 -30.29545 -29.38875 -27.06413 -25.01814 -24.97958 -23.48065 -22.61101 -21.74617 -21.43413 -19.87132 -18.68574 -18.43974 -18.05148 -17.51235 -17.27543 -16.95236 -16.72911 -16.31598 -15.56027 -15.35234 -14.82634 -14.67198 -14.46499 -14.21036 -14.05978 -13.90866 -13.78906 -13.70913 -13.59334 -13.43967 -13.27749 -12.81286 -12.47021 -11.85026 -11.75147 -11.67927 -11.47828 -11.06959 -11.01626 -10.90118 -10.74224 -10.63257 -10.15397 -9.97162 -9.69330 -9.56402 -9.52245 -9.34384 -9.19740 -8.84186 -8.49820 -6.88395 -5.76412 -3.08120 1.40607 1.84262 1.95894 3.01995 3.40560 3.44577 3.48916 3.50262 3.57904 3.60425 3.65260 4.06126 4.38330 4.47448 4.50984 4.55017 4.63326 4.68310 5.06332 5.25856 5.30456 5.44844 5.52813 5.57474 5.62973 5.81360 5.87844 6.03574 6.18260 6.36252 6.39169 6.54710 6.56567 6.69562 6.83791 6.90827 7.17271 7.34825 7.52777 7.56946 7.94855 7.96438 7.99862 8.55536 9.05439 9.71489 10.58252 11.41260 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.002827 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.971552 B = 9902.564735 C =10425.063770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.124 3.876 11 C 0.124 3.876 12 C -0.096 4.096 13 C 0.082 3.918 14 O -0.574 6.574 15 N -0.700 5.700 16 C 0.599 3.401 17 O -0.526 6.526 18 C 0.000 4.000 19 C -0.174 4.174 20 C -0.020 4.020 21 N -0.296 5.296 22 C 0.076 3.924 23 C 0.258 3.742 24 F -0.181 7.181 25 F -0.196 7.196 26 N -0.253 5.253 27 C 0.167 3.833 28 H 0.253 0.747 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.371 0.629 36 H 0.404 0.596 37 H 0.166 0.834 38 H 0.184 0.816 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.032 0.968 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 -23.732 -1.543 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.101 0.899 9 N -0.331 5.331 10 C -0.003 4.003 11 C 0.038 3.962 12 C -0.135 4.135 13 C 0.005 3.995 14 O -0.379 6.379 15 N -0.351 5.351 16 C 0.382 3.618 17 O -0.400 6.400 18 C -0.162 4.162 19 C -0.202 4.202 20 C -0.161 4.161 21 N -0.085 5.085 22 C -0.047 4.047 23 C 0.203 3.797 24 F -0.162 7.162 25 F -0.177 7.177 26 N -0.087 5.087 27 C 0.041 3.959 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.216 0.784 36 H 0.239 0.761 37 H 0.183 0.817 38 H 0.201 0.799 39 H 0.136 0.864 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.049 0.951 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.791 -22.708 -1.770 25.204 hybrid contribution -0.224 0.280 -0.277 0.453 sum -11.016 -22.429 -2.047 25.072 Atomic orbital electron populations 1.69806 1.04987 1.25276 1.56821 1.24776 0.95709 0.97522 1.02400 0.86023 0.78797 0.83617 0.77203 1.20426 1.21807 1.21681 1.19051 0.90335 0.81519 1.43618 0.89928 1.45701 1.01861 0.99482 1.86029 1.22866 0.94669 0.85756 0.97001 1.23016 0.95472 0.84292 0.93448 1.21343 0.95652 1.04514 0.91969 1.22127 0.98370 0.99110 0.79902 1.86491 1.33387 1.97305 1.20693 1.46092 1.35877 1.04927 1.48175 1.16903 0.83386 0.81531 0.80004 1.90781 1.24997 1.85703 1.38525 1.22350 0.95640 0.95654 1.02567 1.21867 1.02019 0.91324 1.04944 1.22882 0.94302 0.97677 1.01196 1.45108 1.21321 1.03717 1.38331 1.22939 0.81804 1.02586 0.97328 1.21921 0.82650 0.77470 0.97661 1.93121 1.95650 1.30786 1.96671 1.93036 1.52622 1.89193 1.82862 1.73704 1.14058 1.03648 1.17297 1.22589 0.88962 0.87351 0.97023 0.93676 0.92944 0.94569 0.90136 0.89158 0.93310 0.94639 0.78380 0.76104 0.81689 0.79899 0.86445 0.84811 0.86750 0.95066 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 11.39 55.49 0.63 -26.41 16 2 C -0.01 -0.22 5.50 -17.42 -0.10 -0.31 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 8 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 9 N -0.60 -15.68 3.55 -177.48 -0.63 -16.31 16 10 C 0.12 2.76 8.04 -2.97 -0.02 2.74 16 11 C 0.12 2.47 0.68 -134.02 -0.09 2.38 16 12 C -0.10 -1.94 4.67 -26.73 -0.12 -2.06 16 13 C 0.08 1.44 6.86 37.16 0.25 1.69 16 14 O -0.57 -9.61 13.66 -35.23 -0.48 -10.09 16 15 N -0.70 -11.83 4.52 -50.03 -0.23 -12.06 16 16 C 0.60 10.09 7.38 -12.39 -0.09 10.00 16 17 O -0.53 -10.30 15.10 5.31 0.08 -10.22 16 18 C 0.00 0.00 7.13 -82.76 -0.59 -0.59 16 19 C -0.17 -1.88 10.81 -39.36 -0.43 -2.30 16 20 C -0.02 -0.14 11.40 -17.17 -0.20 -0.34 16 21 N -0.30 -2.45 3.41 -61.34 -0.21 -2.66 16 22 C 0.08 0.34 6.63 -4.05 -0.03 0.31 16 23 C 0.26 1.56 5.47 37.16 0.20 1.76 16 24 F -0.18 -1.87 16.49 2.25 0.04 -1.83 16 25 F -0.20 -1.32 17.34 2.25 0.04 -1.28 16 26 N -0.25 -3.07 10.68 33.42 0.36 -2.72 16 27 C 0.17 3.88 6.69 -2.83 -0.02 3.86 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.69 6.54 -51.93 -0.34 1.35 16 32 H 0.09 2.06 8.02 -51.93 -0.42 1.64 16 33 H 0.05 0.86 7.61 -51.93 -0.40 0.46 16 34 H 0.04 0.58 7.43 -51.93 -0.39 0.19 16 35 H 0.37 4.19 9.12 45.56 0.42 4.61 16 36 H 0.40 6.28 8.40 -40.82 -0.34 5.94 16 37 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.13 0.04 8.04 -51.93 -0.42 -0.37 16 41 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 2.09 6.59 -51.93 -0.34 1.75 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -36.43 373.65 -5.91 -42.34 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.73 Total: 7.46 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -1.39 Total: 10.81 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.08 Total: -60.16 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.40 Total: -20.30 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.43 -5.91 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700492261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.262 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds