Wall clock time and date at job start Wed Apr 1 2020 02:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00466 * 2 1 4 4 H 1.48500 * 109.46787 * 264.71039 * 3 2 1 5 5 H 1.48496 * 109.46616 * 24.70526 * 3 2 1 6 6 H 1.48493 * 109.47414 * 144.71062 * 3 2 1 7 7 C 1.38816 * 119.99898 * 179.72515 * 2 1 3 8 8 H 1.07995 * 120.00521 * 187.69522 * 7 2 1 9 9 N 1.36937 * 119.99854 * 7.69228 * 7 2 1 10 10 C 1.47074 * 136.05796 * 7.39991 * 9 7 2 11 11 C 1.53754 * 87.88690 * 152.96043 * 10 9 7 12 12 C 1.53002 * 114.08574 * 139.78403 * 11 10 9 13 13 C 1.52998 * 109.46871 * 202.03395 * 12 11 10 14 14 O 1.42909 * 109.46984 * 180.29365 * 13 12 11 15 15 N 1.46505 * 114.57246 * 272.66047 * 11 10 9 16 16 C 1.34773 * 120.00248 * 278.83232 * 15 11 10 17 17 O 1.21633 * 120.00132 * 4.25345 * 16 15 11 18 18 C 1.47162 * 120.00260 * 184.25741 * 16 15 11 19 19 C 1.38399 * 126.88540 * 173.29699 * 18 16 15 20 20 C 1.39675 * 105.35827 * 180.02562 * 19 18 16 21 21 N 1.30859 * 107.86345 * 0.02562 * 20 19 18 22 22 N 1.28446 * 110.92679 * 359.71321 * 21 20 19 23 23 C 1.46502 * 125.19304 * 180.27587 * 22 21 20 24 24 C 1.52998 * 109.47142 * 263.49589 * 23 22 21 25 25 F 1.39904 * 109.46937 * 175.00235 * 24 23 22 26 26 F 1.39897 * 109.46957 * 294.99548 * 24 23 22 27 27 C 1.47067 * 136.05853 * 187.76101 * 9 7 2 28 28 H 0.97000 * 119.99650 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.46539 * 267.69576 * 10 9 7 30 30 H 1.08998 * 113.46581 * 38.13119 * 10 9 7 31 31 H 1.09000 * 109.46721 * 322.03067 * 12 11 10 32 32 H 1.09003 * 109.47446 * 82.03112 * 12 11 10 33 33 H 1.08998 * 109.47583 * 300.29293 * 13 12 11 34 34 H 1.09002 * 109.47191 * 60.29898 * 13 12 11 35 35 H 0.96693 * 113.99906 * 179.97438 * 14 13 12 36 36 H 0.97003 * 119.99408 * 98.83505 * 15 11 10 37 37 H 1.08001 * 127.32082 * 0.02613 * 19 18 16 38 38 H 1.08007 * 126.06815 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.46699 * 23.49322 * 23 22 21 40 40 H 1.09004 * 109.47015 * 143.49075 * 23 22 21 41 41 H 1.08997 * 109.47389 * 54.99744 * 24 23 22 42 42 H 1.08993 * 113.47154 * 321.87222 * 27 9 7 43 43 H 1.09009 * 113.46376 * 92.25595 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6095 1.9817 -1.3941 5 1 1.3963 2.6823 0.5852 6 1 3.4874 1.4749 0.8088 7 6 2.0102 -1.2022 0.0058 8 1 3.0828 -1.2059 0.1310 9 7 1.3347 -2.3835 -0.1473 10 6 -0.0450 -2.7808 -0.4662 11 6 0.5253 -4.0852 -1.0469 12 6 -0.3036 -5.3291 -0.7203 13 6 0.5766 -6.5747 -0.8410 14 8 -0.1994 -7.7370 -0.5426 15 7 0.9176 -4.0045 -2.4561 16 6 -0.0145 -4.1198 -3.4228 17 8 -1.1903 -4.2134 -3.1259 18 6 0.3904 -4.1327 -4.8376 19 6 -0.4223 -4.3718 -5.9320 20 6 0.4173 -4.2764 -7.0441 21 7 1.6228 -4.0032 -6.6147 22 7 1.6428 -3.9068 -5.3340 23 6 2.8285 -3.6044 -4.5284 24 6 3.4395 -4.9082 -4.0110 25 9 4.6338 -4.6286 -3.3381 26 9 2.5434 -5.5269 -3.1328 27 6 1.6681 -3.8131 -0.0590 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6674 -2.9338 0.4155 30 1 -0.5191 -2.1427 -1.2119 31 1 -0.6878 -5.2528 0.2969 32 1 -1.1371 -5.4040 -1.4188 33 1 0.9650 -6.6481 -1.8568 34 1 1.4070 -6.5022 -0.1387 35 1 0.2955 -8.5657 -0.6000 36 1 1.8482 -3.8680 -2.6934 37 1 -1.4808 -4.5864 -5.9272 38 1 0.1237 -4.4054 -8.0755 39 1 3.5601 -3.0786 -5.1419 40 1 2.5437 -2.9764 -3.6842 41 1 3.6425 -5.5727 -4.8508 42 1 2.6533 -4.0546 -0.4577 43 1 1.4982 -4.2381 0.9304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717504085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:15 Heat of formation + Delta-G solvation = -12.959175 kcal Electronic energy + Delta-G solvation = -32868.640114 eV Core-core repulsion = 28204.198898 eV Total energy + Delta-G solvation = -4664.441216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.54955 -47.49369 -42.69350 -39.96290 -37.75393 -36.52940 -34.87479 -33.32951 -32.11558 -31.01138 -30.30065 -29.33215 -27.14463 -24.99180 -24.48598 -23.96051 -22.79472 -21.67203 -21.37371 -20.52045 -19.15169 -18.24827 -17.87929 -17.59784 -17.33344 -16.93826 -16.68372 -15.86406 -15.28828 -15.16397 -15.00487 -14.85053 -14.66839 -14.23001 -14.03447 -13.93080 -13.77867 -13.72537 -13.58674 -13.51490 -13.17078 -12.79730 -12.69207 -12.44397 -11.78723 -11.58292 -11.44831 -11.34145 -11.04199 -10.97527 -10.90869 -10.64787 -10.13736 -10.02002 -9.84780 -9.64109 -9.41739 -9.24701 -9.15113 -8.87797 -8.50011 -6.98805 -5.85881 -3.19165 1.17224 1.93626 2.46836 3.10837 3.26501 3.32317 3.36914 3.40159 3.46222 3.68229 3.76826 4.24095 4.30093 4.40858 4.42779 4.58338 4.88169 4.91793 5.02448 5.15804 5.24489 5.38505 5.42560 5.47780 5.59254 5.76559 5.82764 5.94142 6.14406 6.16024 6.27515 6.34867 6.42573 6.45537 6.65323 6.83465 7.13916 7.21927 7.48906 7.69989 7.77685 7.84136 7.88003 8.41995 8.93774 9.60833 10.53754 11.31788 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.009060 B = 0.005185 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.699900 B = 5399.201791 C = 6349.898653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.166 3.834 11 C 0.119 3.881 12 C -0.116 4.116 13 C 0.080 3.920 14 O -0.575 6.575 15 N -0.684 5.684 16 C 0.586 3.414 17 O -0.514 6.514 18 C -0.018 4.018 19 C -0.158 4.158 20 C 0.006 3.994 21 N -0.282 5.282 22 N -0.286 5.286 23 C 0.056 3.944 24 C 0.245 3.755 25 F -0.184 7.184 26 F -0.182 7.182 27 C 0.117 3.883 28 H 0.256 0.744 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.372 0.628 36 H 0.393 0.607 37 H 0.167 0.833 38 H 0.191 0.809 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.041 0.959 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.980 -13.494 -11.615 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.331 5.331 10 C 0.039 3.961 11 C 0.031 3.969 12 C -0.155 4.155 13 C 0.003 3.997 14 O -0.380 6.380 15 N -0.341 5.341 16 C 0.370 3.630 17 O -0.389 6.389 18 C -0.144 4.144 19 C -0.187 4.187 20 C -0.172 4.172 21 N -0.112 5.112 22 N -0.076 5.076 23 C -0.067 4.067 24 C 0.190 3.810 25 F -0.165 7.165 26 F -0.164 7.164 27 C -0.009 4.009 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.217 0.783 36 H 0.236 0.764 37 H 0.185 0.815 38 H 0.207 0.793 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.059 0.941 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.942 -12.488 -11.458 17.960 hybrid contribution 0.642 0.600 0.345 0.944 sum 6.584 -11.888 -11.113 17.555 Atomic orbital electron populations 1.69856 1.05050 1.25699 1.55042 1.24863 0.95607 0.97684 1.01852 0.86175 0.78656 0.83397 0.77698 1.21494 1.21539 1.20579 1.18873 0.90437 0.81366 1.44843 0.90046 1.45734 1.06887 0.98987 1.81507 1.22358 0.88464 0.88575 0.96655 1.22025 0.98454 0.96200 0.80225 1.21646 0.99383 0.90825 1.03690 1.22211 0.93426 0.85370 0.98723 1.86496 1.41473 1.16648 1.93378 1.46099 1.10630 1.71867 1.05488 1.16868 0.86057 0.77633 0.82455 1.90802 1.16699 1.49573 1.81817 1.22108 0.85748 1.10639 0.95955 1.22227 1.01103 1.05553 0.89823 1.23654 0.88525 1.04583 1.00424 1.73136 1.25117 1.19932 0.93057 1.45324 1.06928 1.51223 1.04140 1.23223 0.87905 0.97361 0.98174 1.22251 0.75924 0.94391 0.88443 1.93078 1.46195 1.94626 1.82609 1.93017 1.67636 1.83876 1.71841 1.22698 0.94937 0.87736 0.95566 0.93403 0.94018 0.91680 0.90274 0.88847 0.93781 0.93925 0.78265 0.76417 0.81509 0.79255 0.83716 0.84955 0.85817 0.94078 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.02 11.89 55.49 0.66 -26.36 16 2 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 3 Si 0.91 21.65 29.56 -169.99 -5.02 16.63 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -6.14 10.73 -15.06 -0.16 -6.30 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.61 -14.90 3.76 -184.56 -0.69 -15.60 16 10 C 0.17 3.97 6.62 -8.37 -0.06 3.92 16 11 C 0.12 2.25 0.73 -131.56 -0.10 2.15 16 12 C -0.12 -2.03 4.93 -26.73 -0.13 -2.16 16 13 C 0.08 1.17 6.84 37.16 0.25 1.43 16 14 O -0.58 -8.11 13.66 -35.23 -0.48 -8.59 16 15 N -0.68 -11.82 3.43 -48.44 -0.17 -11.98 16 16 C 0.59 10.46 7.27 -12.64 -0.09 10.37 16 17 O -0.51 -10.63 14.84 5.25 0.08 -10.55 16 18 C -0.02 -0.28 6.67 -82.06 -0.55 -0.82 16 19 C -0.16 -2.05 10.85 -38.99 -0.42 -2.47 16 20 C 0.01 0.07 12.03 -17.43 -0.21 -0.14 16 21 N -0.28 -3.42 11.90 30.59 0.36 -3.06 16 22 N -0.29 -3.62 3.35 -57.14 -0.19 -3.82 16 23 C 0.06 0.59 5.88 -4.04 -0.02 0.57 16 24 C 0.25 2.30 5.34 37.16 0.20 2.50 16 25 F -0.18 -1.90 17.34 2.25 0.04 -1.86 16 26 F -0.18 -2.18 11.96 2.25 0.03 -2.16 16 27 C 0.12 2.30 7.26 -8.51 -0.06 2.24 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.04 1.04 7.99 -51.93 -0.41 0.62 16 30 H 0.06 1.78 7.67 -51.93 -0.40 1.38 16 31 H 0.08 1.39 7.98 -51.93 -0.41 0.97 16 32 H 0.09 1.81 5.90 -51.93 -0.31 1.51 16 33 H 0.04 0.64 6.56 -51.93 -0.34 0.30 16 34 H 0.04 0.58 7.63 -51.93 -0.40 0.18 16 35 H 0.37 3.32 9.12 45.56 0.42 3.74 16 36 H 0.39 6.14 2.70 -40.82 -0.11 6.03 16 37 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.19 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.14 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.13 1.66 5.95 -51.93 -0.31 1.35 16 41 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.94 8.11 -51.92 -0.42 0.52 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -34.86 359.96 -5.77 -40.63 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.36 Total: 10.17 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -1.45 Total: 11.12 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.03 Total: -60.82 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.40 Total: -19.14 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.86 -5.77 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717504085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.669 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds