Wall clock time and date at job start Wed Apr 1 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00466 * 2 1 4 4 H 1.48500 * 109.46787 * 264.71039 * 3 2 1 5 5 H 1.48496 * 109.46616 * 24.70526 * 3 2 1 6 6 H 1.48493 * 109.47414 * 144.71062 * 3 2 1 7 7 C 1.38816 * 119.99898 * 179.72515 * 2 1 3 8 8 H 1.07995 * 120.00521 * 187.69522 * 7 2 1 9 9 N 1.36937 * 119.99854 * 7.69228 * 7 2 1 10 10 C 1.47074 * 136.05796 * 7.39991 * 9 7 2 11 11 C 1.53754 * 87.88690 * 152.96043 * 10 9 7 12 12 C 1.53002 * 114.08574 * 139.78403 * 11 10 9 13 13 C 1.52998 * 109.46871 * 202.03395 * 12 11 10 14 14 O 1.42909 * 109.46984 * 180.29365 * 13 12 11 15 15 N 1.46505 * 114.57246 * 272.66047 * 11 10 9 16 16 C 1.34773 * 120.00248 * 278.83232 * 15 11 10 17 17 O 1.21633 * 120.00132 * 4.25345 * 16 15 11 18 18 C 1.47162 * 120.00260 * 184.25741 * 16 15 11 19 19 C 1.38399 * 126.88540 * 173.29699 * 18 16 15 20 20 C 1.39675 * 105.35827 * 180.02562 * 19 18 16 21 21 N 1.30859 * 107.86345 * 0.02562 * 20 19 18 22 22 N 1.28446 * 110.92679 * 359.71321 * 21 20 19 23 23 C 1.46502 * 125.19304 * 180.27587 * 22 21 20 24 24 C 1.52998 * 109.47142 * 263.49589 * 23 22 21 25 25 F 1.39904 * 109.46937 * 175.00235 * 24 23 22 26 26 F 1.39897 * 109.46957 * 294.99548 * 24 23 22 27 27 C 1.47067 * 136.05853 * 187.76101 * 9 7 2 28 28 H 0.97000 * 119.99650 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.46539 * 267.69576 * 10 9 7 30 30 H 1.08998 * 113.46581 * 38.13119 * 10 9 7 31 31 H 1.09000 * 109.46721 * 322.03067 * 12 11 10 32 32 H 1.09003 * 109.47446 * 82.03112 * 12 11 10 33 33 H 1.08998 * 109.47583 * 300.29293 * 13 12 11 34 34 H 1.09002 * 109.47191 * 60.29898 * 13 12 11 35 35 H 0.96693 * 113.99906 * 179.97438 * 14 13 12 36 36 H 0.97003 * 119.99408 * 98.83505 * 15 11 10 37 37 H 1.08001 * 127.32082 * 0.02613 * 19 18 16 38 38 H 1.08007 * 126.06815 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.46699 * 23.49322 * 23 22 21 40 40 H 1.09004 * 109.47015 * 143.49075 * 23 22 21 41 41 H 1.08997 * 109.47389 * 54.99744 * 24 23 22 42 42 H 1.08993 * 113.47154 * 321.87222 * 27 9 7 43 43 H 1.09009 * 113.46376 * 92.25595 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6095 1.9817 -1.3941 5 1 1.3963 2.6823 0.5852 6 1 3.4874 1.4749 0.8088 7 6 2.0102 -1.2022 0.0058 8 1 3.0828 -1.2059 0.1310 9 7 1.3347 -2.3835 -0.1473 10 6 -0.0450 -2.7808 -0.4662 11 6 0.5253 -4.0852 -1.0469 12 6 -0.3036 -5.3291 -0.7203 13 6 0.5766 -6.5747 -0.8410 14 8 -0.1994 -7.7370 -0.5426 15 7 0.9176 -4.0045 -2.4561 16 6 -0.0145 -4.1198 -3.4228 17 8 -1.1903 -4.2134 -3.1259 18 6 0.3904 -4.1327 -4.8376 19 6 -0.4223 -4.3718 -5.9320 20 6 0.4173 -4.2764 -7.0441 21 7 1.6228 -4.0032 -6.6147 22 7 1.6428 -3.9068 -5.3340 23 6 2.8285 -3.6044 -4.5284 24 6 3.4395 -4.9082 -4.0110 25 9 4.6338 -4.6286 -3.3381 26 9 2.5434 -5.5269 -3.1328 27 6 1.6681 -3.8131 -0.0590 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6674 -2.9338 0.4155 30 1 -0.5191 -2.1427 -1.2119 31 1 -0.6878 -5.2528 0.2969 32 1 -1.1371 -5.4040 -1.4188 33 1 0.9650 -6.6481 -1.8568 34 1 1.4070 -6.5022 -0.1387 35 1 0.2955 -8.5657 -0.6000 36 1 1.8482 -3.8680 -2.6934 37 1 -1.4808 -4.5864 -5.9272 38 1 0.1237 -4.4054 -8.0755 39 1 3.5601 -3.0786 -5.1419 40 1 2.5437 -2.9764 -3.6842 41 1 3.6425 -5.5727 -4.8508 42 1 2.6533 -4.0546 -0.4577 43 1 1.4982 -4.2381 0.9304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717504085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:14 Heat of formation + Delta-G solvation = -39.869584 kcal Electronic energy + Delta-G solvation = -32869.807037 eV Core-core repulsion = 28204.198898 eV Total energy + Delta-G solvation = -4665.608139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.35367 -48.29998 -43.67458 -41.50580 -39.32204 -37.70929 -35.94586 -34.92762 -33.78098 -32.45821 -31.49809 -30.19691 -29.02482 -26.73867 -25.68298 -25.17958 -24.07050 -23.04009 -22.62973 -21.67030 -20.62304 -19.33255 -18.82524 -18.71450 -18.46075 -18.35827 -17.84807 -17.08449 -16.94191 -16.57421 -16.18027 -16.10985 -15.85164 -15.73750 -15.27364 -15.15786 -15.11217 -14.95986 -14.65809 -14.53638 -14.34484 -14.06428 -14.02381 -13.57073 -13.36683 -13.15205 -12.97729 -12.81542 -12.48908 -12.43378 -12.37424 -12.05549 -11.89911 -11.76003 -11.36670 -11.10366 -10.91168 -10.69869 -10.38578 -10.22342 -9.99786 -9.01596 -7.96596 -5.31217 0.05722 1.02294 1.42443 1.44669 1.52842 1.53391 1.91457 2.07672 2.41835 2.43518 2.93123 2.98088 3.07624 3.25298 3.36756 3.47689 3.53092 3.60920 3.64752 4.04581 4.09924 4.15330 4.18493 4.31739 4.37881 4.46024 4.48776 4.63256 4.67270 4.77662 4.87560 4.88855 5.14013 5.14278 5.24292 5.32961 5.40707 5.55607 5.61085 5.81690 6.36952 6.81590 6.84002 6.93736 7.05054 7.53748 8.52381 9.21714 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.009060 B = 0.005185 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.699900 B = 5399.201791 C = 6349.898653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.262 1.262 7 C -0.229 4.229 8 H 0.096 0.904 9 N -0.627 5.627 10 C 0.162 3.838 11 C 0.144 3.856 12 C -0.112 4.112 13 C 0.092 3.908 14 O -0.590 6.590 15 N -0.679 5.679 16 C 0.583 3.417 17 O -0.553 6.553 18 C -0.052 4.052 19 C -0.157 4.157 20 C 0.016 3.984 21 N -0.278 5.278 22 N -0.283 5.283 23 C 0.051 3.949 24 C 0.248 3.752 25 F -0.188 7.188 26 F -0.198 7.198 27 C 0.125 3.875 28 H 0.247 0.753 29 H 0.022 0.978 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.396 0.604 36 H 0.402 0.598 37 H 0.174 0.826 38 H 0.231 0.769 39 H 0.174 0.826 40 H 0.108 0.892 41 H 0.159 0.841 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.557 -14.936 -13.287 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.187 1.187 7 C -0.356 4.356 8 H 0.113 0.887 9 N -0.353 5.353 10 C 0.035 3.965 11 C 0.056 3.944 12 C -0.152 4.152 13 C 0.014 3.986 14 O -0.399 6.399 15 N -0.337 5.337 16 C 0.369 3.631 17 O -0.431 6.431 18 C -0.178 4.178 19 C -0.186 4.186 20 C -0.161 4.161 21 N -0.109 5.109 22 N -0.073 5.073 23 C -0.071 4.071 24 C 0.194 3.806 25 F -0.169 7.169 26 F -0.179 7.179 27 C 0.000 4.000 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.247 0.753 37 H 0.191 0.809 38 H 0.247 0.753 39 H 0.192 0.808 40 H 0.125 0.875 41 H 0.176 0.824 42 H 0.084 0.916 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.597 -13.984 -13.135 21.023 hybrid contribution -0.180 0.988 0.807 1.289 sum 8.417 -12.996 -12.328 19.791 Atomic orbital electron populations 1.70075 1.06884 1.25766 1.57445 1.25738 0.96332 1.01275 1.02604 0.85095 0.77666 0.78755 0.77816 1.21014 1.22677 1.18678 1.19353 0.91264 0.82339 1.42692 0.88686 1.45973 1.07138 1.00577 1.81644 1.22261 0.88253 0.90801 0.95195 1.21617 0.97354 0.94220 0.81222 1.21539 0.99070 0.91871 1.02697 1.21990 0.92733 0.84332 0.99518 1.86432 1.42403 1.17664 1.93359 1.46083 1.11211 1.71723 1.04657 1.17281 0.85515 0.76513 0.83757 1.90777 1.18214 1.51339 1.82751 1.21812 0.87639 1.13679 0.94627 1.22533 1.01640 1.04365 0.90057 1.24285 0.87350 1.02931 1.01575 1.73162 1.25685 1.19534 0.92510 1.45419 1.06580 1.50951 1.04336 1.23384 0.87848 0.98067 0.97833 1.22481 0.75186 0.94184 0.88771 1.93070 1.46333 1.94684 1.82838 1.92973 1.68343 1.84037 1.72573 1.22797 0.96263 0.84602 0.96381 0.94381 0.95981 0.96278 0.90749 0.90989 0.93322 0.92164 0.75422 0.75280 0.80902 0.75274 0.80809 0.87465 0.82424 0.91560 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.15 11.89 21.65 0.26 -58.89 16 2 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 3 Si 0.98 45.13 29.56 68.60 2.03 47.16 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.23 -12.38 10.73 84.03 0.90 -11.48 16 8 H 0.10 4.77 7.84 -2.91 -0.02 4.75 16 9 N -0.63 -31.42 3.76 -737.82 -2.77 -34.19 16 10 C 0.16 8.18 6.62 83.27 0.55 8.73 16 11 C 0.14 5.56 0.73 4.16 0.00 5.56 16 12 C -0.11 -3.98 4.93 30.59 0.15 -3.83 16 13 C 0.09 2.54 6.84 71.98 0.49 3.04 16 14 O -0.59 -15.52 13.66 -148.98 -2.04 -17.56 16 15 N -0.68 -23.74 3.43 -425.42 -1.46 -25.20 16 16 C 0.58 21.38 7.27 86.59 0.63 22.01 16 17 O -0.55 -24.04 14.84 -4.14 -0.06 -24.10 16 18 C -0.05 -1.52 6.67 40.78 0.27 -1.25 16 19 C -0.16 -3.86 10.85 22.66 0.25 -3.61 16 20 C 0.02 0.30 12.03 85.18 1.02 1.33 16 21 N -0.28 -5.96 11.90 -57.14 -0.68 -6.63 16 22 N -0.28 -6.66 3.35 -334.68 -1.12 -7.78 16 23 C 0.05 0.98 5.88 86.38 0.51 1.48 16 24 C 0.25 4.04 5.34 71.98 0.38 4.43 16 25 F -0.19 -3.41 17.34 44.97 0.78 -2.63 16 26 F -0.20 -4.35 11.96 44.97 0.54 -3.81 16 27 C 0.12 4.80 7.26 83.18 0.60 5.40 16 28 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.02 1.19 7.99 -2.39 -0.02 1.17 16 30 H 0.02 1.11 7.67 -2.39 -0.02 1.09 16 31 H 0.07 2.66 7.98 -2.39 -0.02 2.64 16 32 H 0.07 2.90 5.90 -2.39 -0.01 2.88 16 33 H 0.05 1.32 6.56 -2.39 -0.02 1.30 16 34 H 0.06 1.47 7.63 -2.39 -0.02 1.45 16 35 H 0.40 6.02 9.12 -74.06 -0.68 5.35 16 36 H 0.40 12.43 2.70 -92.71 -0.25 12.18 16 37 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.23 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.17 2.21 8.14 -2.39 -0.02 2.20 16 40 H 0.11 2.64 5.95 -2.39 -0.01 2.62 16 41 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.06 2.32 8.11 -2.38 -0.02 2.30 16 Total: -1.00 -78.97 359.96 1.87 -77.10 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.16 Total: 28.00 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 6.23 Total: 28.53 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -5.77 Total: -132.70 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -2.10 Total: -41.66 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 1.32 Total: -6.44 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -78.97 1.87 -77.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717504085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.235 kcal (2) G-P(sol) polarization free energy of solvation -78.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds