Wall clock time and date at job start Wed Apr 1 2020 02:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36658 * 120.14329 * 2 1 4 4 C 1.38790 * 120.44085 * 180.02562 * 3 2 1 5 5 C 1.37836 * 120.74662 * 359.95790 * 4 3 2 6 6 C 1.38975 * 119.85448 * 0.04173 * 5 4 3 7 7 O 1.34723 * 133.25127 * 179.97438 * 6 5 4 8 8 C 1.34946 * 110.86629 * 180.02562 * 7 6 5 9 9 C 1.46975 * 125.12741 * 180.02562 * 8 7 6 10 10 O 1.21656 * 120.00213 * 187.49763 * 9 8 7 11 11 N 1.34778 * 119.99888 * 7.49031 * 9 8 7 12 12 C 1.47148 * 120.98259 * 356.82272 * 11 9 8 13 13 C 1.53290 * 108.41726 * 129.42126 * 12 11 9 14 14 O 1.43050 * 109.18013 * 52.28486 * 13 12 11 15 15 C 1.42968 * 114.18269 * 297.43671 * 14 13 12 16 16 H 1.08999 * 109.55470 * 302.63450 * 15 14 13 17 17 C 1.52997 * 109.50752 * 182.50461 * 15 14 13 18 18 N 1.46503 * 109.47190 * 65.26121 * 17 15 14 19 19 C 1.36934 * 120.00181 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00131 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99981 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00102 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47322 * 60.00196 * 23 21 19 25 25 H 1.48497 * 109.47052 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47118 * 300.00146 * 23 21 19 27 27 C 1.47159 * 120.97803 * 176.79327 * 11 9 8 28 28 C 1.35809 * 109.74262 * 0.26259 * 8 7 6 29 29 C 1.39667 * 120.14500 * 180.02562 * 2 1 3 30 30 H 1.09010 * 109.46900 * 269.97052 * 1 2 3 31 31 H 1.09000 * 109.48079 * 29.97239 * 1 2 3 32 32 H 1.08997 * 109.47422 * 149.97757 * 1 2 3 33 33 H 1.08001 * 119.77690 * 0.02629 * 3 2 1 34 34 H 1.08010 * 119.62459 * 179.97438 * 4 3 2 35 35 H 1.08003 * 120.06773 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.68083 * 249.15886 * 12 11 9 37 37 H 1.08997 * 109.68459 * 9.67636 * 12 11 9 38 38 H 1.09002 * 109.51705 * 172.24207 * 13 12 11 39 39 H 1.09008 * 109.51466 * 292.39617 * 13 12 11 40 40 H 1.09006 * 109.47004 * 185.25170 * 17 15 14 41 41 H 1.08992 * 109.47523 * 305.25539 * 17 15 14 42 42 H 0.97000 * 119.99813 * 359.97438 * 18 17 15 43 43 H 0.96996 * 119.99987 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.68154 * 350.28457 * 27 11 9 45 45 H 1.08996 * 109.67912 * 110.80569 * 27 11 9 46 46 H 1.08001 * 126.95684 * 179.73323 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1818 0.0000 4 6 3.5811 1.1890 -0.0005 5 6 4.2919 0.0080 -0.0002 6 6 3.6160 -1.2063 -0.0002 7 8 4.0244 -2.4901 -0.0004 8 6 2.9685 -3.3304 -0.0008 9 6 3.0554 -4.7976 -0.0006 10 8 2.0486 -5.4666 -0.1385 11 7 4.2503 -5.4019 0.1523 12 6 5.4899 -4.6152 0.2512 13 6 6.2668 -5.0886 1.4849 14 8 6.4188 -6.5098 1.4277 15 6 5.1857 -7.2325 1.4609 16 1 4.6329 -6.9697 2.3628 17 6 5.4738 -8.7351 1.4575 18 7 6.1651 -9.1025 2.6959 19 6 6.5267 -10.4045 2.9177 20 1 6.3020 -11.1606 2.1800 21 6 7.1822 -10.7525 4.0909 22 7 7.4556 -9.8312 4.9902 23 14 7.6761 -12.5285 4.3932 24 1 8.6004 -12.9748 3.3199 25 1 8.3560 -12.6360 5.7089 26 1 6.4642 -13.3866 4.3912 27 6 4.3538 -6.8680 0.2259 28 6 1.8136 -2.6159 -0.0069 29 6 2.2084 -1.2078 -0.0005 30 1 -0.3633 -0.0005 1.0278 31 1 -0.3635 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6519 2.1163 0.0004 34 1 4.1101 2.1307 -0.0009 35 1 5.3718 0.0265 -0.0002 36 1 6.0936 -4.7674 -0.6435 37 1 5.2464 -3.5578 0.3542 38 1 7.2494 -4.6168 1.4996 39 1 5.7183 -4.8172 2.3869 40 1 4.5351 -9.2849 1.3887 41 1 6.1033 -8.9825 0.6029 42 1 6.3665 -8.4235 3.3586 43 1 7.9132 -10.0745 5.8101 44 1 3.3579 -7.3024 0.3129 45 1 4.8425 -7.2470 -0.6716 46 1 0.8074 -3.0082 -0.0127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724826182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:51 Heat of formation + Delta-G solvation = -17.167881 kcal Electronic energy + Delta-G solvation = -29503.540944 eV Core-core repulsion = 25360.854003 eV Total energy + Delta-G solvation = -4142.686940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.96613 -40.30872 -38.62140 -38.32595 -35.16308 -34.45535 -33.77241 -32.28639 -32.01076 -30.53071 -30.00922 -28.23443 -27.29998 -25.96308 -23.92346 -23.63090 -23.04940 -22.23632 -21.09525 -20.90553 -20.00923 -18.31374 -17.58401 -17.11511 -16.82675 -16.63926 -16.26488 -16.11252 -15.36773 -15.27226 -15.14294 -14.59078 -14.41299 -14.24291 -14.05129 -13.97961 -13.68537 -13.49480 -13.29552 -13.12638 -12.79357 -12.69356 -12.43014 -12.28052 -12.14120 -11.86973 -11.58930 -11.34137 -11.01836 -10.88023 -10.77013 -10.70018 -10.51141 -10.27998 -10.03103 -9.95043 -9.67895 -9.06621 -8.85250 -8.72748 -8.47857 -6.88552 -5.71569 -3.00473 0.17954 0.91936 1.47646 2.00387 2.63340 2.86049 3.23278 3.47712 3.51454 3.52856 3.87475 3.93932 4.11357 4.38770 4.53303 4.59351 4.65834 4.69986 4.72852 4.86793 4.94304 5.03469 5.09089 5.10673 5.18770 5.23177 5.28397 5.29761 5.42173 5.58821 5.61056 5.62027 5.70816 5.81629 5.83759 5.86780 5.91638 5.93489 6.06312 6.13461 6.23232 6.27665 6.55468 6.64174 6.69023 7.02609 7.43818 7.70776 7.72766 8.46385 9.57967 10.14754 10.50569 11.51172 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.002054 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.584225 B =13630.229834 C =14094.481769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.079 4.079 5 C -0.117 4.117 6 C 0.065 3.935 7 O -0.176 6.176 8 C -0.023 4.023 9 C 0.597 3.403 10 O -0.515 6.515 11 N -0.600 5.600 12 C 0.055 3.945 13 C 0.047 3.953 14 O -0.357 6.357 15 C 0.073 3.927 16 H 0.065 0.935 17 C 0.164 3.836 18 N -0.726 5.726 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.085 3.915 28 C -0.108 4.108 29 C -0.142 4.142 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.779 26.408 -12.776 31.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.026 4.026 3 C -0.161 4.161 4 C -0.097 4.097 5 C -0.136 4.136 6 C 0.017 3.983 7 O -0.079 6.079 8 C -0.072 4.072 9 C 0.385 3.615 10 O -0.393 6.393 11 N -0.332 5.332 12 C -0.067 4.067 13 C -0.031 4.031 14 O -0.275 6.275 15 C 0.014 3.986 16 H 0.083 0.917 17 C 0.035 3.965 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.037 4.037 28 C -0.129 4.129 29 C -0.143 4.143 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.102 0.898 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.818 25.655 -12.876 30.675 hybrid contribution 0.200 -0.466 0.448 0.676 sum -10.618 25.189 -12.428 30.028 Atomic orbital electron populations 1.20847 0.90494 1.03296 1.02935 1.19188 0.96251 0.90692 0.96441 1.20699 0.94220 0.97519 1.03696 1.21000 0.94032 0.97177 0.97479 1.20001 1.00437 0.87582 1.05533 1.19969 0.92857 0.84471 1.00973 1.84214 1.33137 1.13952 1.76630 1.21966 0.85790 0.90425 1.09004 1.16813 0.83677 0.83460 0.77584 1.90888 1.34925 1.62874 1.50607 1.48074 1.06271 1.08073 1.70746 1.23127 0.85504 0.97362 1.00675 1.22932 1.01020 0.83389 0.95715 1.88181 1.29097 1.15855 1.94358 1.22822 0.85252 0.94717 0.95780 0.91687 1.20618 0.96356 0.87658 0.91830 1.42219 1.69293 1.07783 1.17792 1.19181 1.30778 0.85399 1.01750 0.91150 1.24753 1.01520 0.97667 0.97067 1.69664 1.46785 1.31912 1.09711 0.86240 0.78218 0.84539 0.77012 1.21258 1.21725 1.21274 1.22486 1.03144 0.77957 1.00088 1.22685 0.99012 0.90191 1.00995 1.19733 0.93032 0.93401 1.08164 0.90491 0.90986 0.91086 0.85134 0.84504 0.84661 0.89949 0.86565 0.87556 0.92756 0.94545 0.95170 0.77903 0.93502 0.87675 0.89807 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.96 36.00 0.36 -0.32 16 2 C -0.03 -0.20 5.88 -104.66 -0.62 -0.82 16 3 C -0.14 -0.93 9.63 -39.95 -0.38 -1.32 16 4 C -0.08 -0.49 10.01 -39.52 -0.40 -0.88 16 5 C -0.12 -0.91 10.07 -39.46 -0.40 -1.30 16 6 C 0.06 0.66 7.41 -38.35 -0.28 0.38 16 7 O -0.18 -1.98 6.95 2.75 0.02 -1.96 16 8 C -0.02 -0.28 6.81 -36.91 -0.25 -0.53 16 9 C 0.60 8.49 7.68 -12.72 -0.10 8.40 16 10 O -0.52 -8.52 16.32 5.23 0.09 -8.44 16 11 N -0.60 -8.18 3.02 -173.72 -0.52 -8.71 16 12 C 0.06 0.64 6.47 -3.54 -0.02 0.62 16 13 C 0.05 0.63 6.99 37.31 0.26 0.89 16 14 O -0.36 -6.32 10.34 -35.23 -0.36 -6.68 16 15 C 0.07 1.27 2.81 -26.58 -0.07 1.19 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 17 C 0.16 3.37 5.93 -4.04 -0.02 3.35 16 18 N -0.73 -19.09 5.55 -59.91 -0.33 -19.42 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.09 1.24 5.92 -3.53 -0.02 1.22 16 28 C -0.11 -1.19 10.52 -37.24 -0.39 -1.58 16 29 C -0.14 -1.45 6.15 -105.19 -0.65 -2.09 16 30 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.07 0.41 7.91 -51.93 -0.41 0.00 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 35 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.12 1.23 3.89 -55.08 -0.21 1.02 16 38 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.39 10.82 7.67 -40.82 -0.31 10.50 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.10 1.54 7.10 -51.93 -0.37 1.17 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -34.56 381.99 -9.24 -43.80 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.35 Total: 6.35 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.23 Total: -0.35 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.13 Total: -56.24 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.26 Total: -17.08 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.56 -9.24 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724826182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.630 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds