Wall clock time and date at job start Wed Apr 1 2020 02:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36658 * 120.14329 * 2 1 4 4 C 1.38790 * 120.44085 * 180.02562 * 3 2 1 5 5 C 1.37836 * 120.74662 * 359.95790 * 4 3 2 6 6 C 1.38975 * 119.85448 * 0.04173 * 5 4 3 7 7 O 1.34723 * 133.25127 * 179.97438 * 6 5 4 8 8 C 1.34946 * 110.86629 * 180.02562 * 7 6 5 9 9 C 1.46975 * 125.12741 * 180.02562 * 8 7 6 10 10 O 1.21656 * 120.00213 * 187.49763 * 9 8 7 11 11 N 1.34778 * 119.99888 * 7.49031 * 9 8 7 12 12 C 1.47148 * 120.98259 * 356.82272 * 11 9 8 13 13 C 1.53290 * 108.41726 * 129.42126 * 12 11 9 14 14 O 1.43050 * 109.18013 * 52.28486 * 13 12 11 15 15 C 1.42968 * 114.18269 * 297.43671 * 14 13 12 16 16 H 1.08999 * 109.55470 * 302.63450 * 15 14 13 17 17 C 1.52997 * 109.50752 * 182.50461 * 15 14 13 18 18 N 1.46503 * 109.47190 * 65.26121 * 17 15 14 19 19 C 1.36934 * 120.00181 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00131 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99981 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00102 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47322 * 60.00196 * 23 21 19 25 25 H 1.48497 * 109.47052 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47118 * 300.00146 * 23 21 19 27 27 C 1.47159 * 120.97803 * 176.79327 * 11 9 8 28 28 C 1.35809 * 109.74262 * 0.26259 * 8 7 6 29 29 C 1.39667 * 120.14500 * 180.02562 * 2 1 3 30 30 H 1.09010 * 109.46900 * 269.97052 * 1 2 3 31 31 H 1.09000 * 109.48079 * 29.97239 * 1 2 3 32 32 H 1.08997 * 109.47422 * 149.97757 * 1 2 3 33 33 H 1.08001 * 119.77690 * 0.02629 * 3 2 1 34 34 H 1.08010 * 119.62459 * 179.97438 * 4 3 2 35 35 H 1.08003 * 120.06773 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.68083 * 249.15886 * 12 11 9 37 37 H 1.08997 * 109.68459 * 9.67636 * 12 11 9 38 38 H 1.09002 * 109.51705 * 172.24207 * 13 12 11 39 39 H 1.09008 * 109.51466 * 292.39617 * 13 12 11 40 40 H 1.09006 * 109.47004 * 185.25170 * 17 15 14 41 41 H 1.08992 * 109.47523 * 305.25539 * 17 15 14 42 42 H 0.97000 * 119.99813 * 359.97438 * 18 17 15 43 43 H 0.96996 * 119.99987 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.68154 * 350.28457 * 27 11 9 45 45 H 1.08996 * 109.67912 * 110.80569 * 27 11 9 46 46 H 1.08001 * 126.95684 * 179.73323 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1818 0.0000 4 6 3.5811 1.1890 -0.0005 5 6 4.2919 0.0080 -0.0002 6 6 3.6160 -1.2063 -0.0002 7 8 4.0244 -2.4901 -0.0004 8 6 2.9685 -3.3304 -0.0008 9 6 3.0554 -4.7976 -0.0006 10 8 2.0486 -5.4666 -0.1385 11 7 4.2503 -5.4019 0.1523 12 6 5.4899 -4.6152 0.2512 13 6 6.2668 -5.0886 1.4849 14 8 6.4188 -6.5098 1.4277 15 6 5.1857 -7.2325 1.4609 16 1 4.6329 -6.9697 2.3628 17 6 5.4738 -8.7351 1.4575 18 7 6.1651 -9.1025 2.6959 19 6 6.5267 -10.4045 2.9177 20 1 6.3020 -11.1606 2.1800 21 6 7.1822 -10.7525 4.0909 22 7 7.4556 -9.8312 4.9902 23 14 7.6761 -12.5285 4.3932 24 1 8.6004 -12.9748 3.3199 25 1 8.3560 -12.6360 5.7089 26 1 6.4642 -13.3866 4.3912 27 6 4.3538 -6.8680 0.2259 28 6 1.8136 -2.6159 -0.0069 29 6 2.2084 -1.2078 -0.0005 30 1 -0.3633 -0.0005 1.0278 31 1 -0.3635 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6519 2.1163 0.0004 34 1 4.1101 2.1307 -0.0009 35 1 5.3718 0.0265 -0.0002 36 1 6.0936 -4.7674 -0.6435 37 1 5.2464 -3.5578 0.3542 38 1 7.2494 -4.6168 1.4996 39 1 5.7183 -4.8172 2.3869 40 1 4.5351 -9.2849 1.3887 41 1 6.1033 -8.9825 0.6029 42 1 6.3665 -8.4235 3.3586 43 1 7.9132 -10.0745 5.8101 44 1 3.3579 -7.3024 0.3129 45 1 4.8425 -7.2470 -0.6716 46 1 0.8074 -3.0082 -0.0127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724826182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:50 Heat of formation + Delta-G solvation = -39.553287 kcal Electronic energy + Delta-G solvation = -29504.511648 eV Core-core repulsion = 25360.854003 eV Total energy + Delta-G solvation = -4143.657644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.72611 -41.42436 -39.66293 -39.13223 -36.73311 -35.93321 -34.40729 -33.98274 -32.68960 -32.06810 -30.97697 -29.43059 -28.02891 -27.31391 -25.32535 -24.75915 -23.87812 -23.54945 -22.33354 -21.76232 -20.97576 -19.33679 -19.09342 -18.35968 -17.81697 -17.68476 -17.31424 -16.99618 -16.76505 -16.42468 -16.09745 -15.98268 -15.75612 -15.27584 -15.07406 -14.78046 -14.66253 -14.52008 -14.44780 -14.34374 -14.08355 -13.95999 -13.38707 -13.23340 -12.98765 -12.77265 -12.70062 -12.66013 -12.47404 -12.33056 -12.11506 -11.99722 -11.87114 -11.83306 -11.42456 -11.28492 -11.17447 -10.95879 -9.89207 -9.65933 -9.18752 -9.01967 -7.94179 -5.24093 -0.57381 0.31568 0.70865 1.14318 1.47597 1.51786 1.57589 1.64333 1.86354 2.56394 2.65496 2.69328 3.01782 3.39441 3.44067 3.49374 3.73376 3.81940 3.85619 3.87621 3.99969 4.07062 4.11348 4.13057 4.30034 4.36386 4.38562 4.42761 4.47702 4.60368 4.66242 4.70888 4.73379 4.78408 4.81843 4.91432 4.94517 5.05604 5.13212 5.22803 5.28350 5.37672 5.48044 5.50174 5.55568 5.91218 6.05224 6.15496 6.26564 6.63141 7.32866 8.06238 8.30971 9.29396 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.002054 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.584225 B =13630.229834 C =14094.481769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.036 4.036 3 C -0.142 4.142 4 C -0.067 4.067 5 C -0.130 4.130 6 C 0.046 3.954 7 O -0.181 6.181 8 C -0.048 4.048 9 C 0.598 3.402 10 O -0.548 6.548 11 N -0.602 5.602 12 C 0.062 3.938 13 C 0.043 3.957 14 O -0.384 6.384 15 C 0.086 3.914 16 H 0.049 0.951 17 C 0.161 3.839 18 N -0.741 5.741 19 C -0.248 4.248 20 H 0.080 0.920 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.979 3.021 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.095 3.905 28 C -0.100 4.100 29 C -0.166 4.166 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.034 0.966 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 28.652 -13.926 33.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.036 4.036 3 C -0.160 4.160 4 C -0.085 4.085 5 C -0.148 4.148 6 C -0.001 4.001 7 O -0.085 6.085 8 C -0.097 4.097 9 C 0.387 3.613 10 O -0.428 6.428 11 N -0.333 5.333 12 C -0.059 4.059 13 C -0.034 4.034 14 O -0.303 6.303 15 C 0.027 3.973 16 H 0.067 0.933 17 C 0.034 3.966 18 N -0.384 5.384 19 C -0.379 4.379 20 H 0.098 0.902 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.807 3.193 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.202 1.202 27 C -0.027 4.027 28 C -0.121 4.121 29 C -0.167 4.167 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.178 0.822 34 H 0.189 0.811 35 H 0.171 0.829 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.982 27.914 -14.071 33.134 hybrid contribution 0.203 -0.926 0.760 1.215 sum -10.779 26.988 -13.311 31.965 Atomic orbital electron populations 1.20902 0.89163 1.04054 1.03466 1.19549 0.97468 0.90458 0.96105 1.21139 0.94675 0.98076 1.02115 1.21497 0.94170 0.97930 0.94856 1.20396 1.01638 0.87058 1.05683 1.20437 0.93435 0.84545 1.01664 1.84096 1.32750 1.14458 1.77179 1.21573 0.86625 0.89647 1.11886 1.17018 0.83225 0.84284 0.76809 1.90853 1.35832 1.63897 1.52215 1.48128 1.06924 1.07737 1.70543 1.23187 0.84556 0.97764 1.00374 1.23176 1.02684 0.81212 0.96289 1.88121 1.29327 1.18258 1.94579 1.22513 0.85489 0.92824 0.96494 0.93280 1.20765 0.96051 0.90228 0.89549 1.42420 1.69805 1.06875 1.19296 1.19641 1.29873 0.86616 1.01817 0.90246 1.25652 1.02269 1.02036 0.97094 1.69837 1.48105 1.34018 1.10130 0.85132 0.78044 0.79467 0.76614 1.20265 1.22143 1.20209 1.22276 1.02423 0.78957 0.99093 1.22913 0.98966 0.91042 0.99148 1.19931 0.93442 0.93556 1.09787 0.89987 0.88971 0.91648 0.82190 0.81067 0.82880 0.88565 0.85244 0.85128 0.93356 0.93443 0.94846 0.79409 0.94000 0.87994 0.88487 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.96 71.23 0.71 -0.44 16 2 C -0.04 -0.50 5.88 -19.89 -0.12 -0.62 16 3 C -0.14 -1.37 9.63 22.03 0.21 -1.16 16 4 C -0.07 -0.59 10.01 22.31 0.22 -0.37 16 5 C -0.13 -1.71 10.07 22.35 0.23 -1.49 16 6 C 0.05 0.90 7.41 23.06 0.17 1.08 16 7 O -0.18 -4.02 6.95 -13.06 -0.09 -4.11 16 8 C -0.05 -1.21 6.81 24.00 0.16 -1.05 16 9 C 0.60 17.41 7.68 86.53 0.66 18.08 16 10 O -0.55 -18.73 16.32 -4.21 -0.07 -18.80 16 11 N -0.60 -16.52 3.02 -821.75 -2.48 -19.00 16 12 C 0.06 1.41 6.47 86.35 0.56 1.96 16 13 C 0.04 1.14 6.99 72.08 0.50 1.64 16 14 O -0.38 -13.73 10.34 -148.98 -1.54 -15.27 16 15 C 0.09 3.03 2.81 30.69 0.09 3.12 16 16 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 17 C 0.16 6.72 5.93 86.38 0.51 7.23 16 18 N -0.74 -39.74 5.55 -343.45 -1.91 -41.65 16 19 C -0.25 -14.32 9.99 84.04 0.84 -13.48 16 20 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 22 N -0.97 -61.29 13.06 21.65 0.28 -61.00 16 23 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 C 0.10 2.78 5.92 86.35 0.51 3.30 16 28 C -0.10 -2.23 10.52 23.79 0.25 -1.98 16 29 C -0.17 -3.26 6.15 -20.24 -0.12 -3.38 16 30 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 32 H 0.06 0.70 7.91 -2.39 -0.02 0.68 16 33 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 34 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 35 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.13 2.66 3.89 -52.25 -0.20 2.46 16 38 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.37 21.63 7.67 -92.71 -0.71 20.92 16 43 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.10 3.06 7.10 -2.39 -0.02 3.04 16 45 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -75.92 381.99 2.19 -73.73 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.11 Total: 28.65 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.86 Total: 8.26 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -4.11 Total: -121.66 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.70 Total: -38.18 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -75.92 2.19 -73.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724826182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.180 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds