Wall clock time and date at job start Wed Apr 1 2020 02:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00290 * 3 2 1 5 5 H 1.48505 * 109.46635 * 29.99511 * 3 2 1 6 6 H 1.48491 * 109.47345 * 150.00038 * 3 2 1 7 7 C 1.38813 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00298 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00260 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00219 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.49809 * 299.94093 * 10 9 7 12 12 O 1.42898 * 109.47868 * 60.06068 * 11 10 9 13 13 C 1.53035 * 109.52313 * 179.85367 * 10 9 7 14 14 C 1.53037 * 109.54044 * 301.39830 * 13 10 9 15 15 C 1.53194 * 109.31468 * 298.63709 * 14 13 10 16 16 N 1.47205 * 108.85312 * 54.65038 * 15 14 13 17 17 C 1.34779 * 120.81459 * 126.33935 * 16 15 14 18 18 O 1.21577 * 119.99768 * 175.62714 * 17 16 15 19 19 C 1.47703 * 120.00012 * 355.62448 * 17 16 15 20 20 C 1.41505 * 126.52073 * 186.40853 * 19 17 16 21 21 C 1.35365 * 105.50662 * 179.90227 * 20 19 17 22 22 C 1.50696 * 126.38798 * 180.15497 * 21 20 19 23 23 F 1.39900 * 109.47004 * 300.26806 * 22 21 20 24 24 F 1.39903 * 109.47113 * 60.26322 * 22 21 20 25 25 N 1.35036 * 107.22725 * 0.35779 * 21 20 19 26 26 H 0.96992 * 124.88687 * 179.75751 * 25 21 20 27 27 N 1.28471 * 110.22971 * 359.76342 * 25 21 20 28 28 C 1.46926 * 118.55483 * 306.47731 * 16 15 14 29 29 H 0.96994 * 120.00245 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99397 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.46865 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.47000 * 300.05805 * 11 10 9 33 33 H 0.96698 * 114.00124 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.46026 * 61.42196 * 13 10 9 35 35 H 1.09001 * 109.45829 * 181.38208 * 13 10 9 36 36 H 1.09005 * 109.49632 * 58.58561 * 14 13 10 37 37 H 1.08996 * 109.50045 * 178.64825 * 14 13 10 38 38 H 1.08997 * 109.58799 * 174.41936 * 15 14 13 39 39 H 1.08995 * 109.58917 * 294.70399 * 15 14 13 40 40 H 1.08000 * 127.24136 * 0.02562 * 20 19 17 41 41 H 1.08998 * 109.47273 * 180.26545 * 22 21 20 42 42 H 1.09007 * 109.58733 * 293.68588 * 28 16 15 43 43 H 1.08999 * 109.58836 * 173.39932 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 2.9367 -3.7392 -1.2492 12 8 3.8666 -2.6541 -1.2502 13 6 1.0646 -4.8209 0.0042 14 6 0.1635 -4.7210 1.2371 15 6 1.0230 -4.8148 2.5018 16 7 2.0755 -3.7876 2.4390 17 6 2.2433 -2.9084 3.4467 18 8 3.1664 -2.1178 3.4162 19 6 1.3056 -2.9054 4.5879 20 6 1.2740 -1.9702 5.6494 21 6 0.2558 -2.3648 6.4492 22 6 -0.1937 -1.6934 7.7213 23 9 0.8631 -1.6757 8.6378 24 9 -0.5899 -0.3812 7.4411 25 7 -0.2793 -3.4750 5.8972 26 1 -1.0258 -3.9730 6.2652 27 7 0.3428 -3.7767 4.8144 28 6 2.9390 -3.7386 1.2512 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 3.4812 -4.6836 -1.2489 32 1 2.3096 -3.6810 -2.1388 33 1 4.4576 -2.6434 -2.0155 34 1 0.4530 -4.7792 -0.8970 35 1 1.6105 -5.7641 0.0290 36 1 -0.3641 -3.7672 1.2258 37 1 -0.5593 -5.5367 1.2266 38 1 0.4003 -4.6452 3.3802 39 1 1.4780 -5.8034 2.5619 40 1 1.9242 -1.1194 5.7904 41 1 -1.0334 -2.2438 8.1455 42 1 3.5523 -4.6387 1.2079 43 1 3.5822 -2.8602 1.3031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724909956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:29 Heat of formation + Delta-G solvation = -66.209072 kcal Electronic energy + Delta-G solvation = -31942.392892 eV Core-core repulsion = 27275.642588 eV Total energy + Delta-G solvation = -4666.750305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.29340 -47.29985 -42.85337 -39.57452 -37.58767 -35.67783 -33.81976 -32.50175 -31.87966 -31.84963 -30.92300 -28.53677 -26.61844 -25.83071 -25.17818 -23.44266 -22.99429 -21.59712 -21.47533 -19.65899 -18.71021 -18.05759 -17.59786 -17.49002 -17.31322 -16.93805 -16.15951 -15.75931 -15.58505 -15.11123 -14.81554 -14.32643 -14.14712 -14.08986 -13.84865 -13.78022 -13.64667 -13.41972 -13.20004 -13.15606 -12.93280 -12.68797 -12.18770 -11.99363 -11.65772 -11.56168 -11.51217 -10.93639 -10.64660 -10.60553 -10.51993 -10.08690 -9.90769 -9.66582 -9.58912 -9.51754 -9.41572 -9.38382 -8.93488 -8.72841 -7.96626 -6.74955 -5.51368 -2.76947 1.40876 1.95124 2.37295 3.25515 3.56536 3.62533 3.67872 3.72585 3.74595 3.88594 4.14009 4.43508 4.63350 4.81681 4.87068 5.08721 5.32320 5.34044 5.36448 5.53075 5.54909 5.62504 5.70323 5.89791 5.92226 5.94669 6.01939 6.11934 6.15896 6.24984 6.29558 6.38292 6.46806 6.68940 6.71448 6.88074 6.97431 7.22170 7.64854 8.01838 8.21813 8.42057 8.66719 8.75102 9.80297 10.28431 10.64044 11.72283 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.004310 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.213123 B = 6495.706048 C = 7916.514694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.024 4.024 3 Si 0.901 3.099 4 H -0.296 1.296 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.199 4.199 8 H 0.092 0.908 9 N -0.703 5.703 10 C 0.189 3.811 11 C 0.076 3.924 12 O -0.540 6.540 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.079 3.921 16 N -0.578 5.578 17 C 0.603 3.397 18 O -0.521 6.521 19 C 0.015 3.985 20 C -0.118 4.118 21 C -0.080 4.080 22 C 0.355 3.645 23 F -0.188 7.188 24 F -0.185 7.185 25 N -0.370 5.370 26 H 0.445 0.555 27 N -0.236 5.236 28 C 0.111 3.889 29 H 0.248 0.752 30 H 0.381 0.619 31 H 0.024 0.976 32 H 0.040 0.960 33 H 0.354 0.646 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.056 0.944 40 H 0.170 0.830 41 H 0.121 0.879 42 H 0.047 0.953 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 -14.140 11.892 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.217 4.217 3 Si 0.734 3.266 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.330 4.330 8 H 0.110 0.890 9 N -0.343 5.343 10 C 0.095 3.905 11 C -0.005 4.005 12 O -0.343 6.343 13 C -0.154 4.154 14 C -0.167 4.167 15 C -0.045 4.045 16 N -0.309 5.309 17 C 0.388 3.612 18 O -0.395 6.395 19 C -0.145 4.145 20 C -0.146 4.146 21 C -0.206 4.206 22 C 0.299 3.701 23 F -0.169 7.169 24 F -0.166 7.166 25 N -0.084 5.084 26 H 0.290 0.710 27 N -0.072 5.072 28 C -0.013 4.013 29 H 0.058 0.942 30 H 0.216 0.784 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.198 0.802 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.074 0.926 40 H 0.187 0.813 41 H 0.138 0.862 42 H 0.065 0.935 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.671 -14.297 12.030 18.875 hybrid contribution 0.197 1.307 -0.236 1.342 sum -2.475 -12.991 11.794 17.719 Atomic orbital electron populations 1.69658 1.05018 1.24951 1.60118 1.24658 0.95346 0.97430 1.04269 0.86226 0.79060 0.84350 0.76984 1.22397 1.22419 1.20636 1.19548 0.91980 0.83042 1.38416 0.89027 1.42424 1.05201 0.99259 1.87420 1.19947 0.90929 0.88151 0.91480 1.22752 0.90983 0.87513 0.99224 1.86880 1.50146 1.49683 1.47563 1.21637 0.97821 0.97431 0.98516 1.21823 0.97781 1.02847 0.94236 1.22578 0.90313 0.90296 1.01265 1.47606 1.33900 1.31350 1.18035 1.16707 0.83268 0.80701 0.80548 1.90802 1.31835 1.38848 1.78001 1.22279 0.97734 0.95629 0.98838 1.21657 0.98545 1.01405 0.93027 1.21645 1.02219 0.95691 1.01093 1.19246 0.87067 0.80456 0.83340 1.93064 1.60190 1.96597 1.67080 1.93094 1.90717 1.38632 1.94158 1.43332 1.27474 1.20361 1.17239 0.71036 1.73297 1.08176 1.24156 1.01563 1.22170 0.92793 1.02058 0.84306 0.94221 0.78387 0.95824 0.94202 0.80176 0.91667 0.92075 0.90327 0.91709 0.85549 0.92555 0.81270 0.86158 0.93522 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.68 13.06 55.49 0.72 -28.96 16 2 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 3 Si 0.90 24.62 29.55 -169.99 -5.02 19.59 16 4 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 5 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 6 H -0.28 -7.70 7.11 56.52 0.40 -7.30 16 7 C -0.20 -5.66 8.21 -15.06 -0.12 -5.78 16 8 H 0.09 2.68 5.28 -52.49 -0.28 2.41 16 9 N -0.70 -17.37 4.75 -47.12 -0.22 -17.59 16 10 C 0.19 3.65 0.68 -131.71 -0.09 3.56 16 11 C 0.08 1.35 6.08 37.16 0.23 1.58 16 12 O -0.54 -10.48 10.10 -35.23 -0.36 -10.84 16 13 C -0.12 -1.80 4.76 -26.69 -0.13 -1.93 16 14 C -0.13 -1.95 5.91 -26.61 -0.16 -2.11 16 15 C 0.08 1.20 6.33 -3.56 -0.02 1.18 16 16 N -0.58 -10.99 2.90 -173.70 -0.50 -11.49 16 17 C 0.60 12.71 7.70 -12.39 -0.10 12.62 16 18 O -0.52 -12.87 16.36 5.30 0.09 -12.78 16 19 C 0.02 0.27 6.90 -82.77 -0.57 -0.30 16 20 C -0.12 -1.87 10.73 -39.36 -0.42 -2.29 16 21 C -0.08 -0.93 6.66 -82.21 -0.55 -1.48 16 22 C 0.35 3.09 5.79 36.00 0.21 3.30 16 23 F -0.19 -1.95 17.32 2.25 0.04 -1.91 16 24 F -0.18 -2.15 17.32 2.25 0.04 -2.11 16 25 N -0.37 -3.69 6.83 33.50 0.23 -3.47 16 26 H 0.44 2.23 8.96 -190.45 -1.71 0.52 16 27 N -0.24 -3.28 8.58 33.42 0.29 -2.99 16 28 C 0.11 2.19 4.83 -3.71 -0.02 2.18 16 29 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.38 10.13 6.43 -40.82 -0.26 9.86 16 31 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.35 5.05 9.12 45.56 0.42 5.46 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.48 6.76 -51.93 -0.35 1.12 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.13 1.85 3.75 -112.84 -0.42 1.42 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 41 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 2.50 5.72 -51.93 -0.30 2.20 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -38.28 355.70 -7.02 -45.30 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.84 Total: 12.17 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.84 Total: 9.72 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.51 Total: -64.49 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.27 Total: -23.62 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.08 Total: -4.02 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.02 Total: 19.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.28 -7.02 -45.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724909956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.911 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds