Wall clock time and date at job start Wed Apr 1 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00290 * 3 2 1 5 5 H 1.48505 * 109.46635 * 29.99511 * 3 2 1 6 6 H 1.48491 * 109.47345 * 150.00038 * 3 2 1 7 7 C 1.38813 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00298 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00260 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00219 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.49809 * 299.94093 * 10 9 7 12 12 O 1.42898 * 109.47868 * 60.06068 * 11 10 9 13 13 C 1.53035 * 109.52313 * 179.85367 * 10 9 7 14 14 C 1.53037 * 109.54044 * 301.39830 * 13 10 9 15 15 C 1.53194 * 109.31468 * 298.63709 * 14 13 10 16 16 N 1.47205 * 108.85312 * 54.65038 * 15 14 13 17 17 C 1.34779 * 120.81459 * 126.33935 * 16 15 14 18 18 O 1.21577 * 119.99768 * 175.62714 * 17 16 15 19 19 C 1.47703 * 120.00012 * 355.62448 * 17 16 15 20 20 C 1.41505 * 126.52073 * 186.40853 * 19 17 16 21 21 C 1.35365 * 105.50662 * 179.90227 * 20 19 17 22 22 C 1.50696 * 126.38798 * 180.15497 * 21 20 19 23 23 F 1.39900 * 109.47004 * 300.26806 * 22 21 20 24 24 F 1.39903 * 109.47113 * 60.26322 * 22 21 20 25 25 N 1.35036 * 107.22725 * 0.35779 * 21 20 19 26 26 H 0.96992 * 124.88687 * 179.75751 * 25 21 20 27 27 N 1.28471 * 110.22971 * 359.76342 * 25 21 20 28 28 C 1.46926 * 118.55483 * 306.47731 * 16 15 14 29 29 H 0.96994 * 120.00245 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99397 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.46865 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.47000 * 300.05805 * 11 10 9 33 33 H 0.96698 * 114.00124 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.46026 * 61.42196 * 13 10 9 35 35 H 1.09001 * 109.45829 * 181.38208 * 13 10 9 36 36 H 1.09005 * 109.49632 * 58.58561 * 14 13 10 37 37 H 1.08996 * 109.50045 * 178.64825 * 14 13 10 38 38 H 1.08997 * 109.58799 * 174.41936 * 15 14 13 39 39 H 1.08995 * 109.58917 * 294.70399 * 15 14 13 40 40 H 1.08000 * 127.24136 * 0.02562 * 20 19 17 41 41 H 1.08998 * 109.47273 * 180.26545 * 22 21 20 42 42 H 1.09007 * 109.58733 * 293.68588 * 28 16 15 43 43 H 1.08999 * 109.58836 * 173.39932 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 2.9367 -3.7392 -1.2492 12 8 3.8666 -2.6541 -1.2502 13 6 1.0646 -4.8209 0.0042 14 6 0.1635 -4.7210 1.2371 15 6 1.0230 -4.8148 2.5018 16 7 2.0755 -3.7876 2.4390 17 6 2.2433 -2.9084 3.4467 18 8 3.1664 -2.1178 3.4162 19 6 1.3056 -2.9054 4.5879 20 6 1.2740 -1.9702 5.6494 21 6 0.2558 -2.3648 6.4492 22 6 -0.1937 -1.6934 7.7213 23 9 0.8631 -1.6757 8.6378 24 9 -0.5899 -0.3812 7.4411 25 7 -0.2793 -3.4750 5.8972 26 1 -1.0258 -3.9730 6.2652 27 7 0.3428 -3.7767 4.8144 28 6 2.9390 -3.7386 1.2512 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 3.4812 -4.6836 -1.2489 32 1 2.3096 -3.6810 -2.1388 33 1 4.4576 -2.6434 -2.0155 34 1 0.4530 -4.7792 -0.8970 35 1 1.6105 -5.7641 0.0290 36 1 -0.3641 -3.7672 1.2258 37 1 -0.5593 -5.5367 1.2266 38 1 0.4003 -4.6452 3.3802 39 1 1.4780 -5.8034 2.5619 40 1 1.9242 -1.1194 5.7904 41 1 -1.0334 -2.2438 8.1455 42 1 3.5523 -4.6387 1.2079 43 1 3.5822 -2.8602 1.3031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724909956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:28 Heat of formation + Delta-G solvation = -98.197490 kcal Electronic energy + Delta-G solvation = -31943.780014 eV Core-core repulsion = 27275.642588 eV Total energy + Delta-G solvation = -4668.137426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.07523 -48.10015 -43.95320 -41.06819 -39.17155 -37.14762 -35.58914 -34.14074 -33.15322 -32.93316 -32.50899 -30.41775 -27.69731 -27.09836 -26.49157 -25.56705 -24.30549 -22.90523 -22.55504 -20.88384 -20.01006 -19.47067 -19.11985 -18.39912 -18.27600 -18.21067 -17.78766 -17.14706 -16.86847 -16.48860 -16.32144 -15.93369 -15.68218 -15.56092 -15.05219 -14.96285 -14.92867 -14.72649 -14.47650 -14.45417 -14.18994 -14.00029 -13.65323 -13.55475 -13.21647 -12.90833 -12.78789 -12.69369 -12.47716 -12.32492 -12.08655 -11.86472 -11.41788 -11.32896 -11.29190 -11.03489 -10.73488 -10.64657 -10.54506 -10.52249 -9.51315 -8.80124 -7.81346 -5.02133 0.29971 0.68264 1.39302 1.42632 1.46457 1.51913 1.98812 2.39411 2.63798 2.71946 3.06930 3.13941 3.40170 3.48540 3.68739 3.88901 3.89192 3.92464 4.07621 4.15546 4.20459 4.25338 4.35454 4.45994 4.58653 4.62354 4.78695 4.80461 4.85201 4.94505 4.99128 5.05748 5.15951 5.21377 5.46502 5.54054 5.69181 5.88844 5.92323 6.43683 6.46976 6.66802 7.18035 7.22473 7.52487 8.22156 8.44740 9.43066 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.004310 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.213123 B = 6495.706048 C = 7916.514694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.091 4.091 3 Si 0.946 3.054 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.289 1.289 7 C -0.168 4.168 8 H 0.081 0.919 9 N -0.710 5.710 10 C 0.175 3.825 11 C 0.077 3.923 12 O -0.574 6.574 13 C -0.110 4.110 14 C -0.123 4.123 15 C 0.075 3.925 16 N -0.578 5.578 17 C 0.587 3.413 18 O -0.580 6.580 19 C -0.022 4.022 20 C -0.161 4.161 21 C -0.055 4.055 22 C 0.354 3.646 23 F -0.197 7.197 24 F -0.203 7.203 25 N -0.332 5.332 26 H 0.472 0.528 27 N -0.224 5.224 28 C 0.114 3.886 29 H 0.239 0.761 30 H 0.370 0.630 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.376 0.624 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.035 0.965 37 H 0.106 0.894 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.150 0.850 41 H 0.192 0.808 42 H 0.081 0.919 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -17.770 12.850 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.280 4.280 3 Si 0.779 3.221 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.216 1.216 7 C -0.301 4.301 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.084 3.916 11 C -0.003 4.003 12 O -0.380 6.380 13 C -0.148 4.148 14 C -0.162 4.162 15 C -0.048 4.048 16 N -0.308 5.308 17 C 0.374 3.626 18 O -0.459 6.459 19 C -0.179 4.179 20 C -0.189 4.189 21 C -0.183 4.183 22 C 0.300 3.700 23 F -0.179 7.179 24 F -0.184 7.184 25 N -0.051 5.051 26 H 0.323 0.677 27 N -0.062 5.062 28 C -0.011 4.011 29 H 0.048 0.952 30 H 0.203 0.797 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.223 0.777 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.054 0.946 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.110 0.890 40 H 0.168 0.832 41 H 0.208 0.792 42 H 0.099 0.901 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.064 -18.021 12.962 22.568 hybrid contribution 0.676 2.261 -0.477 2.407 sum -3.389 -15.761 12.485 20.390 Atomic orbital electron populations 1.69768 1.05752 1.24520 1.63169 1.25197 0.96103 0.99813 1.06908 0.85486 0.77513 0.82058 0.77032 1.21512 1.23108 1.21568 1.19652 0.91590 0.84499 1.34322 0.90096 1.42537 1.04797 1.00335 1.87191 1.20435 0.91944 0.87317 0.91930 1.22709 0.91005 0.88911 0.97715 1.86793 1.51031 1.50962 1.49228 1.21655 0.97199 0.97094 0.98809 1.21794 0.98183 1.02122 0.94063 1.22893 0.89649 0.90539 1.01674 1.47813 1.34374 1.31556 1.17069 1.17320 0.83281 0.80235 0.81804 1.90745 1.34366 1.41203 1.79589 1.21837 0.99227 0.97921 0.98963 1.21706 1.00824 1.01866 0.94513 1.21942 1.00075 0.95039 1.01205 1.19968 0.88467 0.79840 0.81767 1.93049 1.61214 1.96558 1.67043 1.93062 1.90805 1.40292 1.94267 1.43373 1.26793 1.19397 1.15493 0.67698 1.73138 1.07248 1.23153 1.02613 1.22035 0.92830 1.01335 0.84856 0.95172 0.79670 0.91360 0.94444 0.77652 0.91317 0.87972 0.94644 0.87558 0.84983 0.89025 0.83181 0.79184 0.90110 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.62 13.06 21.65 0.28 -63.34 16 2 C -0.09 -5.68 5.50 84.86 0.47 -5.22 16 3 Si 0.95 52.83 29.55 68.60 2.03 54.86 16 4 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 5 H -0.30 -17.10 7.11 99.48 0.71 -16.39 16 6 H -0.29 -16.32 7.11 99.48 0.71 -15.61 16 7 C -0.17 -9.89 8.21 84.03 0.69 -9.20 16 8 H 0.08 4.94 5.28 -2.91 -0.02 4.93 16 9 N -0.71 -35.71 4.75 -303.00 -1.44 -37.15 16 10 C 0.18 6.57 0.68 3.68 0.00 6.57 16 11 C 0.08 2.55 6.08 71.98 0.44 2.99 16 12 O -0.57 -22.08 10.10 -148.98 -1.51 -23.58 16 13 C -0.11 -3.03 4.76 30.62 0.15 -2.88 16 14 C -0.12 -3.40 5.91 30.67 0.18 -3.22 16 15 C 0.07 2.06 6.33 86.31 0.55 2.61 16 16 N -0.58 -21.93 2.90 -821.74 -2.39 -24.31 16 17 C 0.59 25.91 7.70 86.74 0.67 26.58 16 18 O -0.58 -30.99 16.36 -3.96 -0.06 -31.06 16 19 C -0.02 -0.78 6.90 42.46 0.29 -0.49 16 20 C -0.16 -5.27 10.73 22.41 0.24 -5.03 16 21 C -0.05 -1.17 6.66 41.40 0.28 -0.89 16 22 C 0.35 5.12 5.79 71.23 0.41 5.53 16 23 F -0.20 -3.69 17.32 44.97 0.78 -2.92 16 24 F -0.20 -4.41 17.32 44.97 0.78 -3.63 16 25 N -0.33 -5.59 6.83 -47.93 -0.33 -5.92 16 26 H 0.47 2.40 8.96 -220.00 -1.97 0.43 16 27 N -0.22 -5.82 8.58 -48.18 -0.41 -6.24 16 28 C 0.11 4.46 4.83 86.36 0.42 4.88 16 29 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.37 20.17 6.43 -92.71 -0.60 19.57 16 31 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.38 10.40 9.12 -74.06 -0.68 9.73 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.03 1.30 6.76 -2.38 -0.02 1.28 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.13 3.53 3.75 -81.18 -0.30 3.23 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 41 H 0.19 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 43 H 0.05 2.69 5.72 -2.39 -0.01 2.68 16 Total: -1.00 -92.49 355.70 0.09 -92.41 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -2.42 Total: 28.64 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 4.78 Total: 22.24 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -4.28 Total: -136.96 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -1.57 Total: -54.64 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.56 Total: -6.55 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.03 Total: 54.86 kcal Total: -92.49 0.09 -92.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724909956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.792 kcal (2) G-P(sol) polarization free energy of solvation -92.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds