Wall clock time and date at job start Wed Apr 1 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48503 * 109.47075 * 270.00338 * 3 2 1 5 5 H 1.48503 * 109.47217 * 29.99725 * 3 2 1 6 6 H 1.48496 * 109.47488 * 150.00088 * 3 2 1 7 7 C 1.38812 * 120.00548 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99581 * 359.97438 * 7 2 1 9 9 N 1.36929 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00283 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47362 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.46061 * 65.02981 * 11 10 9 13 13 C 1.53047 * 109.46238 * 305.07127 * 11 10 9 14 14 C 1.53190 * 109.31235 * 178.61363 * 13 11 10 15 15 N 1.46924 * 108.77803 * 54.63415 * 14 13 11 16 16 C 1.34782 * 120.63357 * 126.36453 * 15 14 13 17 17 O 1.21570 * 120.00136 * 174.02412 * 16 15 14 18 18 C 1.47712 * 119.99608 * 354.02119 * 16 15 14 19 19 C 1.41504 * 126.51810 * 173.24100 * 18 16 15 20 20 C 1.35364 * 105.50272 * 179.90488 * 19 18 16 21 21 N 1.35033 * 107.23064 * 0.35825 * 20 19 18 22 22 C 1.46497 * 124.88264 * 179.76106 * 21 20 19 23 23 F 1.39900 * 109.46998 * 209.97542 * 22 21 20 24 24 F 1.39895 * 109.47325 * 329.97694 * 22 21 20 25 25 N 1.28473 * 110.23144 * 359.76432 * 21 20 19 26 26 C 1.46928 * 118.74000 * 306.39092 * 15 14 13 27 27 C 1.53039 * 109.46255 * 185.00102 * 11 10 9 28 28 H 0.97002 * 119.99976 * 359.97438 * 1 2 3 29 29 H 0.97008 * 119.99999 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46914 * 60.00143 * 10 9 7 31 31 H 1.08998 * 109.46911 * 300.00072 * 10 9 7 32 32 H 0.96708 * 114.00028 * 300.00044 * 12 11 10 33 33 H 1.09002 * 109.49165 * 298.56871 * 13 11 10 34 34 H 1.08994 * 109.49368 * 58.66108 * 13 11 10 35 35 H 1.08994 * 109.58747 * 294.84375 * 14 13 11 36 36 H 1.09001 * 109.58113 * 174.42164 * 14 13 11 37 37 H 1.08004 * 127.24543 * 0.02562 * 19 18 16 38 38 H 1.08000 * 126.37899 * 180.09059 * 20 19 18 39 39 H 1.08996 * 109.47265 * 89.98135 * 22 21 20 40 40 H 1.08998 * 109.58474 * 293.82130 * 26 15 14 41 41 H 1.08997 * 109.58863 * 173.39493 * 26 15 14 42 42 H 1.09001 * 109.49854 * 301.33951 * 27 11 10 43 43 H 1.09000 * 109.49690 * 61.43341 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1123 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0011 12 8 5.9806 -1.5449 1.2203 13 6 5.9663 -1.2828 -1.1821 14 6 7.4671 -0.9769 -1.1588 15 7 8.2080 -2.2454 -1.1331 16 6 9.1643 -2.5009 -2.0479 17 8 9.8443 -3.5041 -1.9524 18 6 9.3861 -1.5619 -3.1663 19 6 10.4287 -1.6208 -4.1212 20 6 10.2261 -0.5651 -4.9438 21 7 9.1311 0.0862 -4.4964 22 6 8.5685 1.2947 -5.1040 23 9 7.9462 2.0665 -4.1170 24 9 9.5933 2.0376 -5.6998 25 7 8.6537 -0.5063 -3.4613 26 6 7.8861 -3.2306 -0.0917 27 6 6.3805 -3.5112 -0.1269 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3619 -0.0007 30 1 3.8486 -3.0425 -0.8908 31 1 3.8493 -3.0421 0.8891 32 1 5.5332 -0.7002 1.3670 33 1 5.7117 -1.7852 -2.1153 34 1 5.4041 -0.3522 -1.1042 35 1 7.7077 -0.3952 -0.2691 36 1 7.7389 -0.4130 -2.0512 37 1 11.2186 -2.3549 -4.1820 38 1 10.8304 -0.2920 -5.7963 39 1 7.8362 1.0137 -5.8609 40 1 8.1609 -2.8326 0.8852 41 1 8.4343 -4.1537 -0.2798 42 1 6.1131 -4.1667 0.7020 43 1 6.1221 -3.9926 -1.0700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724982705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:33 Heat of formation + Delta-G solvation = -55.532600 kcal Electronic energy + Delta-G solvation = -31255.050748 eV Core-core repulsion = 26588.763410 eV Total energy + Delta-G solvation = -4666.287338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.95602 -48.04983 -43.12613 -40.19789 -38.49227 -35.63643 -34.17925 -33.49035 -32.09557 -31.56767 -30.88359 -30.58434 -27.65000 -26.65562 -24.31972 -23.46072 -22.86387 -22.08821 -21.39241 -20.37195 -19.49354 -18.93615 -18.80644 -18.00419 -17.89182 -17.24196 -16.16222 -16.09801 -15.73936 -15.11669 -15.05563 -14.83503 -14.71837 -14.59588 -14.44555 -14.31673 -13.97571 -13.85512 -13.57976 -13.49810 -13.17501 -13.06814 -12.80675 -12.59145 -12.49605 -11.95959 -11.89924 -11.43262 -11.27460 -11.08490 -10.94041 -10.68636 -10.31634 -10.26368 -10.10272 -9.91898 -9.70516 -9.62301 -9.39619 -8.97824 -8.60538 -7.31813 -5.82567 -3.19273 0.98003 1.27698 1.66597 2.84025 2.92362 3.15421 3.28498 3.31750 3.34511 3.39550 3.81106 4.16762 4.18135 4.45680 4.52012 4.62365 4.84316 4.87891 5.10773 5.13370 5.18199 5.23788 5.41829 5.45690 5.50046 5.52740 5.64105 5.73508 5.91358 5.92751 5.97354 6.02657 6.17908 6.27666 6.31301 6.56626 6.58198 6.64417 7.19478 7.40185 7.88615 7.96703 8.01561 8.35262 9.12680 9.84725 10.02967 11.35781 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.003802 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.998530 B = 7363.740181 C = 9578.371620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.133 3.867 11 C 0.123 3.877 12 O -0.559 6.559 13 C -0.152 4.152 14 C 0.080 3.920 15 N -0.590 5.590 16 C 0.600 3.400 17 O -0.536 6.536 18 C 0.014 3.986 19 C -0.168 4.168 20 C 0.001 3.999 21 N -0.354 5.354 22 C 0.502 3.498 23 F -0.164 7.164 24 F -0.175 7.175 25 N -0.243 5.243 26 C 0.119 3.881 27 C -0.115 4.115 28 H 0.260 0.740 29 H 0.357 0.643 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.378 0.622 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.171 0.829 38 H 0.191 0.809 39 H 0.166 0.834 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.840 0.474 -11.931 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.006 3.994 11 C 0.082 3.918 12 O -0.365 6.365 13 C -0.190 4.190 14 C -0.043 4.043 15 N -0.322 5.322 16 C 0.386 3.614 17 O -0.411 6.411 18 C -0.149 4.149 19 C -0.196 4.196 20 C -0.139 4.139 21 N -0.151 5.151 22 C 0.369 3.631 23 F -0.145 7.145 24 F -0.156 7.156 25 N -0.075 5.075 26 C -0.003 4.003 27 C -0.154 4.154 28 H 0.070 0.930 29 H 0.191 0.809 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.226 0.774 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.189 0.811 38 H 0.208 0.792 39 H 0.183 0.817 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.350 0.115 -11.550 25.159 hybrid contribution 0.661 1.669 -0.303 1.821 sum 23.012 1.784 -11.853 25.946 Atomic orbital electron populations 1.69697 1.05098 1.25858 1.57371 1.24673 0.95230 0.97138 1.01965 0.86581 0.79133 0.85134 0.77761 1.21026 1.21587 1.20489 1.19041 0.80461 0.94805 1.43178 0.89161 1.42697 1.04173 1.01849 1.91310 1.21303 0.88774 0.89781 0.99553 1.21416 0.94250 0.92214 0.83877 1.86404 1.70146 1.39684 1.40289 1.22476 0.95311 1.01519 0.99727 1.22641 0.91425 0.84890 1.05348 1.47963 1.36002 1.19079 1.29141 1.16934 0.80256 0.83991 0.80251 1.90784 1.47249 1.27565 1.75534 1.22265 0.96798 0.95947 0.99866 1.21881 1.01453 1.00726 0.95517 1.22896 0.91858 0.95754 1.03353 1.47049 1.23146 1.21891 1.22972 1.21562 0.82594 0.74718 0.84192 1.93188 1.81696 1.75103 1.64486 1.93147 1.62605 1.76853 1.82988 1.73398 1.23680 1.08645 1.01814 1.21604 0.95475 0.92603 0.90644 1.21845 0.94189 0.96061 1.03305 0.92983 0.80895 0.94768 0.94462 0.77384 0.90547 0.90121 0.91274 0.85204 0.81136 0.79242 0.81736 0.90340 0.89111 0.89612 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.97 55.49 0.78 -28.15 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.41 27.73 -169.99 -4.71 16.69 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.17 6.52 56.52 0.37 -5.81 16 7 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.75 -17.08 4.87 -59.91 -0.29 -17.38 16 10 C 0.13 2.52 5.43 -4.04 -0.02 2.50 16 11 C 0.12 1.90 0.71 -90.58 -0.06 1.83 16 12 O -0.56 -8.79 11.70 -35.23 -0.41 -9.20 16 13 C -0.15 -2.24 4.88 -26.61 -0.13 -2.37 16 14 C 0.08 1.08 6.09 -3.71 -0.02 1.06 16 15 N -0.59 -8.07 2.97 -173.93 -0.52 -8.59 16 16 C 0.60 8.55 7.69 -12.39 -0.10 8.46 16 17 O -0.54 -8.70 16.37 5.30 0.09 -8.62 16 18 C 0.01 0.17 6.87 -82.76 -0.57 -0.40 16 19 C -0.17 -1.58 10.81 -39.36 -0.43 -2.00 16 20 C 0.00 0.01 10.98 -17.17 -0.19 -0.18 16 21 N -0.35 -3.05 3.68 -66.63 -0.24 -3.29 16 22 C 0.50 3.02 6.56 59.85 0.39 3.41 16 23 F -0.16 -1.49 17.26 2.25 0.04 -1.45 16 24 F -0.17 -1.02 16.96 2.25 0.04 -0.98 16 25 N -0.24 -2.80 8.12 33.42 0.27 -2.53 16 26 C 0.12 1.55 6.18 -3.71 -0.02 1.53 16 27 C -0.12 -1.54 5.11 -26.61 -0.14 -1.67 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.36 7.72 3.41 -40.82 -0.14 7.58 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.38 5.79 8.19 45.56 0.37 6.16 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.28 6.53 -51.93 -0.34 0.94 16 35 H 0.07 0.94 7.81 -51.93 -0.41 0.53 16 36 H 0.13 1.73 3.75 -109.25 -0.41 1.32 16 37 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.19 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.17 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 1.04 7.81 -51.93 -0.41 0.63 16 41 H 0.09 1.17 7.04 -51.93 -0.37 0.80 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -34.89 357.52 -5.78 -40.68 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -4.67 Total: 12.15 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.54 Total: 5.28 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.01 Total: -59.93 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.33 Total: -17.82 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.44 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.89 -5.78 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724982705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.855 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds